mRNA_H-elongata_contig61658.13718.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61658.13718.1
Unique NamemRNA_H-elongata_contig61658.13718.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: D7G000_ECTSI (Coiled-coil flagellar protein, move backward only 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G000_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 4.740e-35
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGLQ 252
            VEQQI+EIEKQN  IN LER+MLRLKAMYE AVEQRN AGVQLIDRNDELCVLYEKSNIQETTL EG+LAI KRE+DI+ML LQ
Sbjct:  481 VEQQIVEIEKQNGVINALERDMLRLKAMYEAAVEQRNFAGVQLIDRNDELCVLYEKSNIQETTLKEGSLAITKREEDIRMLRLQ 564          
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: A0A7S1CG89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG89_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.470e-26
Identity = 51/84 (60.71%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGLQ 252
            VEQQI+EI+K N+ IN +EREML LK  YE AV+ RN  G+QLIDRNDELC+LYEKSNI E TL +G + +++R+Q+++ML +Q
Sbjct:  148 VEQQIVEIDKLNSIINAMEREMLALKRQYERAVDARNYTGIQLIDRNDELCILYEKSNIHEATLRDGEVKLRERDQEVRMLRIQ 231          
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: A0A024UKD7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKD7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.340e-26
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGL 249
            VEQQI++I+K N+ IN+ E+EMLRLK  YE AVE RN  GVQLIDRNDELC+LYEKSNIQ  TLTEG LAIQ+++Q  +ML +
Sbjct:  581 VEQQIVQIDKLNSIINMTEKEMLRLKKKYEIAVEARNSTGVQLIDRNDELCILYEKSNIQTKTLTEGELAIQEKDQQSRMLNI 663          
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: A0A485L0Y5_9STRA (Aste57867_13890 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0Y5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.080e-26
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGL 249
            VEQQI++I+K N+ IN+ E+EMLRLK  YE AVE RN  GVQLIDRNDELC+LYEKSNIQ  TLTEG LAIQ+++Q  +ML +
Sbjct:  581 VEQQIVQIDKLNSIINMTEKEMLRLKKKYEIAVEARNSTGVQLIDRNDELCILYEKSNIQAKTLTEGELAIQEKDQQSRMLHI 663          
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: A0A836CM07_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM07_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.770e-25
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGLQ 252
            VEQQI EIE+ NT IN LER+MLRLK  YE AVE RN AGVQLIDRNDELCVLYEK+N+QE TL  G  A++ +E +++ML LQ
Sbjct:  391 VEQQITEIERLNTIINGLERDMLRLKGRYEGAVEARNAAGVQLIDRNDELCVLYEKANLQEKTLEAGAAAVRAKEGELRMLRLQ 474          
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: A0A067CNG4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CNG4_SAPPC)

HSP 1 Score: 107 bits (267), Expect = 2.800e-25
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGL 249
            VEQQI++I+K N+ INV E++MLRLK  YE AVE RN  GVQLIDRNDELC+LYEK NIQ  TLT+G LAIQ++EQ  +ML +
Sbjct:  570 VEQQIVQIDKLNSIINVTEKDMLRLKKQYEIAVEARNSTGVQLIDRNDELCILYEKCNIQAKTLTDGELAIQEKEQQSRMLHI 652          
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: A0A1V9Z2P3_9STRA (MBO2, coiled coil flagellar protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z2P3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.730e-25
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGL 249
            VEQQI++I+K N+ IN+ E+EMLRLK  YE AVE RN  GV+LIDRNDELC+LYEK NIQ  TLT+G LAIQ++EQ  +ML +
Sbjct:  578 VEQQIVQIDKLNSIINMTEKEMLRLKKKYEIAVEARNSTGVELIDRNDELCILYEKCNIQAKTLTDGELAIQEKEQQSRMLHI 660          
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: A0A7S2RZA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RZA3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.300e-24
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGLQ 252
            VEQQI+EI+K N+ IN +E+ MLRLK  YE AVE RN  GVQLIDRNDELC+LYEK+N+QE TL  G L ++++E+ +++L LQ
Sbjct:  332 VEQQIVEIDKLNSIINTMEKAMLRLKKQYEVAVENRNFTGVQLIDRNDELCILYEKANLQEETLKTGELGLREKEEQVRLLKLQ 415          
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: A0A7S1U464_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U464_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.330e-24
Identity = 52/84 (61.90%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGLQ 252
            VEQQI+EI+K N+ IN LE +MLRLK  +E AVE RN+ GVQLIDRNDELC+LYEK+N+QE TL  G +A+ ++E++I++L LQ
Sbjct:  576 VEQQIVEIDKLNSIINSLEGDMLRLKRQFEDAVEARNMTGVQLIDRNDELCILYEKANLQEETLKRGEIALSEKEEEIRLLRLQ 659          
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Match: A0A1V9Z3F5_9STRA (MBO2, coiled coil flagellar protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3F5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.810e-24
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDELCVLYEKSNIQETTLTEGTLAIQKREQDIKMLGL 249
            VEQQI++I+K N+ IN  E++MLRLK  YE AVE RN  GVQLIDRNDELC+LYEKSNIQ  TLT+G LA+Q++EQ  +ML +
Sbjct:  580 VEQQIVQIDKLNSIINSTEKDMLRLKKKYEIAVEARNSTGVQLIDRNDELCILYEKSNIQAKTLTDGELALQEKEQQGRMLHI 662          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61658.13718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G000_ECTSI4.740e-3584.52Coiled-coil flagellar protein, move backward only ... [more]
A0A7S1CG89_9STRA1.470e-2660.71Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A024UKD7_9STRA4.340e-2667.47Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485L0Y5_9STRA8.080e-2667.47Aste57867_13890 protein n=1 Tax=Aphanomyces stella... [more]
A0A836CM07_9STRA2.770e-2567.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067CNG4_SAPPC2.800e-2566.27Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9Z2P3_9STRA9.730e-2565.06MBO2, coiled coil flagellar protein n=1 Tax=Thraus... [more]
A0A7S2RZA3_9STRA1.300e-2460.71Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S1U464_9STRA1.330e-2461.90Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9Z3F5_9STRA1.810e-2465.06MBO2, coiled coil flagellar protein n=1 Tax=Achlya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61658contigH-elongata_contig61658:243..1079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.9e-30
Seed eggNOG ortholog2880.D7G000
Preferred nameCCDC146
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464
EggNOG OGs28H8C@1,2QPM4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncoiled-coil flagellar protein, move backward only 2
Ec32 orthologEc-22_003470.1
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.499843-CDS-H-elongata_contig61658:242..2991622930994.499843-CDS-H-elongata_contig61658:242..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61658 243..299 -
1691679654.4639816-CDS-H-elongata_contig61658:242..2991691679654.4639816-CDS-H-elongata_contig61658:242..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61658 243..299 -
1622930994.5288959-CDS-H-elongata_contig61658:884..10791622930994.5288959-CDS-H-elongata_contig61658:884..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61658 885..1079 -
1691679654.478932-CDS-H-elongata_contig61658:884..10791691679654.478932-CDS-H-elongata_contig61658:884..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61658 885..1079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61658.13718.1prot_H-elongata_contig61658.13718.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61658 243..1079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61658.13718.1

>prot_H-elongata_contig61658.13718.1 ID=prot_H-elongata_contig61658.13718.1|Name=mRNA_H-elongata_contig61658.13718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
VEQQIIEIEKQNTAINVLEREMLRLKAMYETAVEQRNLAGVQLIDRNDEL
CVLYEKSNIQETTLTEGTLAIQKREQDIKMLGLQ
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mRNA from alignment at H-elongata_contig61658:243..1079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61658.13718.1 ID=mRNA_H-elongata_contig61658.13718.1|Name=mRNA_H-elongata_contig61658.13718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at H-elongata_contig61658:243..1079- (Himanthalia elongata Himel1 dioecious)
GTGGAGCAACAGATCATCGAGATTGAGAAGCAAAACACCGCGATCAACGT GCTTGAGCGGGAGATGCTGCGACTGAAGGCCATGTACGAGACGGCAGTGG AGCAGCGAAACCTGGCCGGGGTACAGCTGATCGACCGGAACGACGAGCTG TGTGTCCTCTACGAAAAGTCCAACATCCAGGAGACCACTCTCACCGTGAG TCATATTCCAGCTGGCGTCAACATGCCCATGGTTTGTGGGTAGAGTACGC CTTAACCCAGATGTATTTTTATTTCTATGGACTTCCTTGTTCTTTAAAGG AACCCCGGAAAGTGAAATCCCCGGGGTTTTCAGAGATAACTTTAGCTAGG GACACCTTATCGGAATGGAAAATGACCACTTCCTGTTTACAGTTAGGTCC ATCCAATAAGTGAGGGGTGTAATCAGACGCTGGGAAGGTGGTAGTACGCC GCACTAGCTCTTCAAAATATTAACCTTGCGCACCGTTAACAGGGGACATT TTTGCGCGATATCCTGGGACGGATGACGTAACCAATGATTTCCACAGCAA CGTTTCTCTCCTTCAAGAGGAGACGAGTGTTTATTTAATATTTTTATGCT GTGTCGCAGTGAGCAACCTTTACCCCCCGACACCCCTGCCCTCGGGGGCG TGTTTCCCTTATAGCAAGCTGGCTAGTGACGTCATTCCGCTCGTCGAGCG TACTCAACGCTTACTTTTTCATCACGCCCTCAAGCGGAAAATAAACCCGG TCGCCCCCTCCTCCCTTGACGTGTGGTCAGGAGGGCACCCTGGCGATCCA GAAGCGCGAACAAGACATCAAGATGCTTGGATTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig61658:243..1079-

>mRNA_H-elongata_contig61658.13718.1 ID=mRNA_H-elongata_contig61658.13718.1|Name=mRNA_H-elongata_contig61658.13718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig61658:243..1079- (Himanthalia elongata Himel1 dioecious)
GTGGAGCAACAGATCATCGAGATTGAGAAGCAAAACACCGCGATCAACGT
GCTTGAGCGGGAGATGCTGCGACTGAAGGCCATGTACGAGACGGCAGTGG
AGCAGCGAAACCTGGCCGGGGTACAGCTGATCGACCGGAACGACGAGCTG
TGTGTCCTCTACGAAAAGTCCAACATCCAGGAGACCACTCTCACCGTGGA
GCAACAGATCATCGAGATTGAGAAGCAAAACACCGCGATCAACGTGCTTG
AGCGGGAGATGCTGCGACTGAAGGCCATGTACGAGACGGCAGTGGAGCAG
CGAAACCTGGCCGGGGTACAGCTGATCGACCGGAACGACGAGCTGTGTGT
CCTCTACGAAAAGTCCAACATCCAGGAGACCACTCTCACCGAGGGCACCC
TGGCGATCCAGAAGCGCGAACAAGACATCAAGATGCTTGGATTACAGGAG
GGCACCCTGGCGATCCAGAAGCGCGAACAAGACATCAAGATGCTTGGATT
ACAG
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