mRNA_H-elongata_contig61615.13713.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61615.13713.1
Unique NamemRNA_H-elongata_contig61615.13713.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61615.13713.1 vs. uniprot
Match: D7G521_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G521_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.780e-22
Identity = 137/226 (60.62%), Postives = 149/226 (65.93%), Query Frame = 3 
Query:  549 F*LGISLAVALNSRERCP-----PPSGSGVTASVGYTEIRYNIEEDVVSVKPVRPTSSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--------------------------------------PQAKVLYDYDPAGQEGMLPVSAGQVVDIKNQDSPDWWMAALNDGREGWVPANYLEMQ 1097
            F L + ++V    +E  P     PP  SG          RYNIEEDVVSVKP RP  SRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXG                                      PQA+VLYDYDPAGQEGM+ VSAGQ+V + N+D+PDWWMA+L+ G EGWVPANYLEMQ
Sbjct:  169 FKLAVHMSVYDGVKETAPSVKEIPPLLSGFFER--EISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGYGQPAAGTNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQMVGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ 392
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BLAST of mRNA_H-elongata_contig61615.13713.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.280e-20
Identity = 125/226 (55.31%), Postives = 136/226 (60.18%), Query Frame = 3 
Query:  549 F*LGISLAVALNSRERCP-----PPSGSGVTASVGYTEIRYNIEEDVVSVKPVRPTSSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--------------------------------------PQAKVLYDYDPAGQEGMLPVSAGQVVDIKNQDSPDWWMAALNDGREGWVPANYLEMQ 1097
            F L + ++V    +E  P     PP  SG          RYNIEEDVVSVKP RP  SRPGWAAAXXXXXXXXXXXXXXXXXX      XXXXXXX           XXXXXXXXXXXXXXXXXXXXXXX                                       PQA+VLYDYDPAGQEGM+ VSAGQVV + N+D+PDWWMA+L+ G EGWVPANYLEMQ
Sbjct: 1162 FKLAVHMSVYDGVKETAPSVKEIPPLLSGFFER--EISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXGSSNGGXXXXXXXSAPPAANSTAAXXXXXXXXXXXXXXXXXXXXXXXXGGYGQQAAITNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQVVGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ 1385
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BLAST of mRNA_H-elongata_contig61615.13713.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.650e-10
Identity = 89/183 (48.63%), Postives = 110/183 (60.11%), Query Frame = 3 
Query:  555 LGISLAVALNSRERCPPPSGSGVTASVGYT---EIRYNIEEDVVSVKPVRPTSSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQAKVLYDYDPAGQEGMLPVSAGQVVDIKNQDSPDWWMAALNDGREGWVPANYLEM 1094
            L + ++V   ++   PP           +    E RYNIE+DVVS  P    + R GW AAXXXXXXXXXXXXXXXX              XXXXXXXXXXXXX  XXXXXXXXXX           P A+ LYDYDPAGQ GML +  GQ + IK+++  DWWMA   +G++GWVPA+Y+++
Sbjct: 1276 LAVHMSVVEGAKAAAPPEREIPAILGAFFDRAIEPRYNIEQDVVSAAPPPRRAERAGWGAAXXXXXXXXXXXXXXXXYQNGAAAAATPYGAXXXXXXXXXXXXXPLXXXXXXXXXXS---------APTARALYDYDPAGQAGMLALRMGQALVIKDREGADWWMAET-EGQQGWVPASYVQL 1448
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61615.13713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G521_ECTSI3.780e-2260.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK5_9PHAE2.280e-2055.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C908_9STRA2.650e-1048.63P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61615contigH-elongata_contig61615:156..3493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score61.2
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog28583.AMAG_11379T0
Preferred nameMYO1
KEGG koko:K10356
GOsGO:0000003,GO:0000146,GO:0000147,GO:0000278,GO:0000281,GO:0000282,GO:0000902,GO:0000910,GO:0001411,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005826,GO:0005856,GO:0005886,GO:0005933,GO:0005937,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006898,GO:0006950,GO:0006970,GO:0006996,GO:0007009,GO:0007010,GO:0007015,GO:0007049,GO:0007114,GO:0007121,GO:0007163,GO:0008064,GO:0008092,GO:0008150,GO:0008289,GO:0008360,GO:0009628,GO:0009651,GO:0009653,GO:0009826,GO:0009932,GO:0009987,GO:0010256,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016459,GO:0016461,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019954,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030010,GO:0030029,GO:0030036,GO:0030427,GO:0030428,GO:0030479,GO:0030832,GO:0030833,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031097,GO:0031334,GO:0031505,GO:0031579,GO:0031580,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032502,GO:0032505,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0034315,GO:0040007,GO:0042623,GO:0042763,GO:0042764,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043332,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044463,GO:0044464,GO:0044853,GO:0044855,GO:0044856,GO:0044877,GO:0045010,GO:0045121,GO:0045160,GO:0045229,GO:0046903,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051015,GO:0051125,GO:0051127,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051301,GO:0051493,GO:0051495,GO:0051641,GO:0051665,GO:0051666,GO:0051668,GO:0060560,GO:0061024,GO:0061640,GO:0061645,GO:0065007,GO:0065008,GO:0070938,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0071944,GO:0071963,GO:0090066,GO:0097435,GO:0098589,GO:0098590,GO:0098657,GO:0098805,GO:0098857,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120038,GO:1902903,GO:1902905,GO:1903047,GO:2000601
EggNOG free text desc.translation initiation factor activity
EggNOG OGs39J88@33154,3NW13@4751,COG5022@1,KOG0162@2759
COG Functional cat.Z
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMyTH4 domain
Ec32 orthologEc-00_008190.1
Exons2
Model size2767
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61615.13713.1prot_H-elongata_contig61615.13713.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61615 1019..1826 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.0335488-UTR-H-elongata_contig61615:155..10181622930994.0335488-UTR-H-elongata_contig61615:155..1018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61615 156..1018 +
1691679654.3178194-UTR-H-elongata_contig61615:155..10181691679654.3178194-UTR-H-elongata_contig61615:155..1018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61615 156..1018 +
1622930994.1005943-UTR-H-elongata_contig61615:1826..34931622930994.1005943-UTR-H-elongata_contig61615:1826..3493Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61615 1827..3493 +
1691679654.3488517-UTR-H-elongata_contig61615:1826..34931691679654.3488517-UTR-H-elongata_contig61615:1826..3493Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61615 1827..3493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.066933-CDS-H-elongata_contig61615:1018..11531622930994.066933-CDS-H-elongata_contig61615:1018..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61615 1019..1153 +
1691679654.3281636-CDS-H-elongata_contig61615:1018..11531691679654.3281636-CDS-H-elongata_contig61615:1018..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61615 1019..1153 +
1622930994.0850787-CDS-H-elongata_contig61615:1724..18261622930994.0850787-CDS-H-elongata_contig61615:1724..1826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61615 1725..1826 +
1691679654.3396716-CDS-H-elongata_contig61615:1724..18261691679654.3396716-CDS-H-elongata_contig61615:1724..1826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61615 1725..1826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61615.13713.1

>prot_H-elongata_contig61615.13713.1 ID=prot_H-elongata_contig61615.13713.1|Name=mRNA_H-elongata_contig61615.13713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MPGMPAMAAPALPPKPKPPSGPQAKVLYDYDPAGQEGMLPVSAGQVVDIK
NQDSPDWWMAALNDGREGWVPANYLEMQ*
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mRNA from alignment at H-elongata_contig61615:156..3493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61615.13713.1 ID=mRNA_H-elongata_contig61615.13713.1|Name=mRNA_H-elongata_contig61615.13713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3338bp|location=Sequence derived from alignment at H-elongata_contig61615:156..3493+ (Himanthalia elongata Himel1 dioecious)
GACGCGGGACGGAACGGCCGAACTCGTCTCGCGAGGCTAAATTATCGGGC
GCGAACCGAAATAGGGGGAAAAAAAAATATACATTTTCTCAGTTCAGCTG
ACCACAAGCAGGAGGCAACCATATCCGATTGATCCATACTATACTTCTAT
ATAATACGAGGTGATGACTCTACCGTTGCGTTAAGCTTTGTGGTGTGCGT
TCGACGGTTTATGCCTTCACGAGTAGATCAAGGTCCTTGTGCGGTACTCG
GGAGTATATGATATACGGTAGTCGATAACGATAGCGGCCGCTGAACGTAC
AACACTTGGTTACCTAGAGTCAATTAATCCATGGCATTTATTTCATGGCA
TGTTGGGTTTGGCGTAGTAGCAAACGCAAGCATAATGACTACAAAAATGG
TATGATTTCTTGTAAACGTGGCATGGCAGATGAAAACGCGACATATCGCC
CCGTTCCGGCATTATTGGGATTATGCGTGATCTATGCTCTATATGTCCGC
TAGGATACGAAATGTCTTTTAACAAAATGACACTACGTAGCAGTTTGATT
TTAGCTAGGAATCTCGCTAGCTGTAGCTCTTAATAGTCGAGAACGTTGCC
CCCCCCCCTCCGGTTCCGGTGTGACGGCCTCGGTGGGATATACTGAAATC
AGGTACAACATCGAGGAGGACGTCGTGAGCGTCAAGCCTGTTCGACCAAC
CTCTTCGCGCCCAGGGTGGGCGGCGGCAGCTGCTTCCGCCGCTGCTGCTT
CTGCCGCGTCTACCTCCTCCATCGGGAGTTCCAACGGCTTGTACGGTGGC
CACCTGGCGCAGGGGGGGTACGGCGGGTACGATTCGCGATCGACGAACGG
CGGTTCAGTCGGGATGCCGGGGATGCCCGCCATGGCGGCGCCGGCCTTAC
CGCCGAAGCCGAAGCCGCCGTCTGGCCCTCAGGCAAAGGTTTTGTACGAC
TACGACCCAGCGGGGCAGGAGGGCATGTTGCCGGTGTCTGCAGGACAGGT
GGGTCGACGACCGCGCGTTGCTATTGCTGCTTGTTGCCTCTTTTATCAGT
ATGTCGGCGAGACCCGGGGAAGTTGCCAGTGCGTGCGTGCGTACGCCATT
CCTCGTCTCTCTGTGTGTCTGCGTGTGCGTGCATTTATTAAATTGTATAT
AACCGTGTAATCCGGTCCTGTACTCTAGCCATGTGCATGTTTGTGAATGT
GTGTATTTATTCAATTAACCCTTTTGGAACTGGATTTCAAGTTTTATATT
GAATTTAGTGTTTAAAAGACAGATCGAGTTCCATAGGGGTTAAACATAAC
CGCGCAATCCGGCCCTGTGATGCTAGTTTTTCTAGGCTACTCTCGCATTG
GTCCTCCCAATGGGGGATCAGTCATATTTGCTGTTTGTGTGCGTGTGTAT
ATTTGTATATTTGGGTAGTTCCGCCCTGGCAGAGCTTAACGAACTCCTTC
CTCTCCCCTCCCCTCCCCTCCCTTATTCGAGGAGAATAAAATATCTAAAA
GATCCTTTACCGGTGCCTGATGGCGAAATATCGCGGTATAACGGCGTTTG
TTTTTCTTACACCACGCAGGTGGTGGACATCAAGAACCAAGACAGCCCTG
ATTGGTGGATGGCAGCCCTTAACGACGGTCGGGAGGGATGGGTCCCAGCC
AACTACCTCGAGATGCAGTAGAAGGCTGTGATACCGTCTTGTGATCTGTC
TAGGGTAGGGGTGGGGGGCAAATATCAAAGCCGCCTCCACCCGATCACCT
ACTCTACCCTCTGGCGGCGTTTTGTTGTTGTGGGGACTAGCTCCTCTTGA
TGCCCCGTCCGTGCCGTCAACACTTGGACGGAGGGCGATTATCTCGATTA
TCTCGTGATTTTCCTGTTATCCCCCCCTCTCCCCTCCCTGGTTCCGCCTT
CCTTCTCTGACGACTCTGCCCCTTCGGCTTTTGATTTTATTAGTAGTAGT
AGACTGAAGTACGGGGGATTGAAGAGCACGGGTAAGGCAACCGGATCGAG
GCTACTGAGAGTTCTTATATCAGCCCTGCTTATTCACTGATTTGGGCGTG
TGCTCATTCGTTGACATTCGTTGATTCGAGGAGTCGCGGGTGAGAAGGGC
GGGTGGGGTCAAACTCGACATCCATTCAGCAGCTTCCTTTCTTTACTCGG
CATTCGTTGGATGGGATGGGATAGGATGGGATGGGTAGCAGCGCTCTTGG
TGCGCGTGAGCCTTTTTTCGGCCTCCGAAAGTGGGCCTTCACCTTGATTA
ATCGTCAAGGAGGGCCGTTTCAAGGTGAATGAACCCGGACTCGACGGGTC
TCGAGTCAAATAACGTGTATCGAGGAGGGCTCCTGTTGTTGCGATGATGG
TTGCCTTAGACCTTATTCTCTCGGTGGAGACGGAGGCGATAGGTGTCGCG
GGCACTACAGACGGTAGGAGGGTTCGAGAGCACCATCCGTAACTTGACGG
GTGGGACGGAGTAAGCCCTTCCCCCTGGGTGTTGTTCGTTGAAGACGACA
CGCGTAGAAATCGTTGACGGAAGCTTCCGTGGAACCGTTTCTGGAGCTGT
CCTTCATTGCGTTTGTAGGGAAAATGTGATGGGTTTGCAGGGCTAGGATG
TCTTTTTGGGTGTGATTAGATGCACCCTATGTTCCCGTCCTTGGTTAGTA
CTACTAATAGTACTATTTACTGTATAGTTAAATGGTTGATAAAAAAGTCC
GTTACAATTTCTGGCGGGGTTGGGGGGGGGGGAGGGTGTTTGTTTTCGAG
CTGGAAGCAACATTAATTATATTTACAAATAACATCTTCATATGGTTTTC
GATTCCCCGGTGTCCTTGATTGCAAAGCTTCCTTGTCTTGTGAAACCGAT
CTCTGGTTTCGTCGTGGTATGGTGGTAACGCCTGGAGCTCTGCAGCGGCA
CGCGAATTTCCACTGTTCGGAGTGGGATTTATATATATATATATATATAT
AGTGGGTATATAGTGTATTAATATTATTAGTAATAATAACCGAAAGAATG
AAAAAGCAACCGAACCCGCTCCGCTGTTCGTTCTCTCTCGCGAATCGTTG
CTCGCCCGGCGGCTTGCACACCCCTCTTGAAGCCGATTGCTGCCAGCTGA
TGTGTTGGGGTCTTCGCCGTTTCGACGATTTTCCTTGGCCCTGGAAGCGG
GAAAGCAGAGCTGCTCACCGTTAGCTATTTATAGCCTCATGCGGCGGCTC
GAAGCCCTGAGCGTTTTACCTTTTATTGTCTAGTAGTACGTGTAATCTAT
AGATACGAAGTATGTTGTCTATATTTTATACAGTATTTTATTTTATTTTT
GCATATGGCCTAATATGGTTAGAATGTGGGAAATAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig61615:156..3493+

>mRNA_H-elongata_contig61615.13713.1 ID=mRNA_H-elongata_contig61615.13713.1|Name=mRNA_H-elongata_contig61615.13713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig61615:156..3493+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGGGATGCCCGCCATGGCGGCGCCGGCCTTACCGCCGAAGCCGAA
GCCGCCGTCTGGCCCTCAGGCAAAGGTTTTGTACGACTACGACCCAGCGG
GGCAGGAGGGCATGTTGCCGGTGTCTGCAGGACAGATGCCGGGGATGCCC
GCCATGGCGGCGCCGGCCTTACCGCCGAAGCCGAAGCCGCCGTCTGGCCC
TCAGGCAAAGGTTTTGTACGACTACGACCCAGCGGGGCAGGAGGGCATGT
TGCCGGTGTCTGCAGGACAGGTGGTGGACATCAAGAACCAAGACAGCCCT
GATTGGTGGATGGCAGCCCTTAACGACGGTCGGGAGGGATGGGTCCCAGC
CAACTACCTCGAGATGCAGTAGGTGGTGGACATCAAGAACCAAGACAGCC
CTGATTGGTGGATGGCAGCCCTTAACGACGGTCGGGAGGGATGGGTCCCA
GCCAACTACCTCGAGATGCAGTAG
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