prot_H-elongata_contig6147.13702.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6147.13702.1
Unique Nameprot_H-elongata_contig6147.13702.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length244
Homology
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A6H5JWU1_9PHAE (Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU1_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 1.840e-118
Identity = 157/241 (65.15%), Postives = 192/241 (79.67%), Query Frame = 0
Query:    1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRFVAMNNREDNVWGQQEKHMPGPKWPDLFNVSIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTMPGRSATKERQSKRASDPWRAGDDDDAFVDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHRE-KSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKAAS 240
            +R T+P HS SW INICP +HK+F EILFHFNPRRRFVAMNNRE N+WGQQEKHM   +WP++FNVSI+LAVQID AGFH+A+DGKYC TF  R ++P N E+L LQ+MT DDY TNL LVVHEIWWGHK TMPG     +  ++R ++ WR  + +DAFVDLH   LP MP+S+ QE+VR RL D+FQP+G IQVRV HRE K+FGF+KFR+HN AAKALEEL   E++G+ +RLSKAA+
Sbjct:   75 MRATIPAHSTSWAINICPKDHKNFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINLAVQIDAAGFHVAVDGKYCATFAHRTKVPPNDEELVLQVMTRDDYDTNLPLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDAFVDLHAAGLPPMPNSDLQESVRKRLVDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKAAA 315          
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: D7FJF5_ECTSI (Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF5_ECTSI)

HSP 1 Score: 350 bits (897), Expect = 4.800e-116
Identity = 156/241 (64.73%), Postives = 193/241 (80.08%), Query Frame = 0
Query:    1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRFVAMNNREDNVWGQQEKHMPGPKWPDLFNVSIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTMPGRSATKERQSKRASDPWRAGDDDDAFVDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHRE-KSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKAAS 240
            +R T+P HS SW INICP +HKDF EILFHFNPRRRFVAMNNRE N+WGQQEKHM   +WP++FNVSI++AVQID AGFH+A+DGKYC TF  R ++P +GE+L LQ+MT DDY TNL LVVHEIWWGHK TMPG     +  ++R ++ WR  + +DAFVDLH   LP MP+S+ +E+VR RL D+FQP+G IQVRV HRE K+FGF+KFR+HN AAKALEEL   E++G+ +RLSKAA+
Sbjct:  258 MRATIPAHSTSWAINICPKDHKDFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINVAVQIDAAGFHVAVDGKYCATFAHRTKVPPSGEELVLQVMTRDDYDTNLRLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDAFVDLHAAGLPPMPTSDLEESVRKRLIDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKAAA 498          
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A835YJA2_9STRA (Galectin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.650e-43
Identity = 77/246 (31.30%), Postives = 135/246 (54.88%), Query Frame = 0
Query:    1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRR----FVAMNNREDNVWGQQEKHMPGPKWPDLFNVSIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGED--LTLQIMTADDYGTNLGLVVHEIWWGHKQTMPGRSATKERQSKRASDPWRAGDDDDAFVDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHREKSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKAAS 240
            +R+TVP  S  WGI++CP +H DF  +L+HFNPR +     +  N+R D  W          ++P +F ++   A+QID  GFH+ + G Y  +F  R+ +    +D  L L++   DDYG    L +H+IWWG K+  P +   +E ++  +      G+ +  F +LH+ N+       ++  +R  L D+F  + V  V+V+   + +GF+ F+   GAA+AL+E +   ++G+ ++++KA S
Sbjct:   83 LRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLN-EFPAMFGLTFDTAIQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSG--IGGGEYETEFRNLHISNIAHSDDPAEEALIRQELEDLFAKYDVEAVKVISG-RGYGFINFKSAEGAAQALQETNGTRVHGQDIKVTKARS 324          
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A7S0GIA8_9STRA (Galectin (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIA8_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.140e-24
Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 0
Query:    1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRF----VAMNNREDNVWGQQEKHMPGPKWPDLFNV-SIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTM 133
            I+   PP S+ + INI    H+DF ++LFHFNPR+R     + +N R+D +WGQ    +P    P +F   S  L VQ++  GF + ID K+C     R +LP    +L LQ  + DDYG +    V ++WWGHK  M
Sbjct:  239 IKFAAPPESERFSINIAGPGHRDFFDVLFHFNPRQRHKGGQLVVNERQDGIWGQGVA-VPLSTLPLIFGQNSCTLTVQVNGGGFDVFIDEKHCARLEHRTQLPPEECNLFLQFPSTDDYGKSENWKVFKVWWGHKDCM 375          
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A7S4K6P9_9STRA (Galectin n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6P9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.220e-23
Identity = 73/242 (30.17%), Postives = 119/242 (49.17%), Query Frame = 0
Query:    1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRF----VAMNNREDNVWGQQEKHMPGPKWPDLFNV-SIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTMPGRSATKERQSKRASDPWRAGDDDDAFVDLH-----VGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQ-VRVLH-REKSFGFVKFRDHNGAAKALEEL-SEVEIN 229
            ++   P  S+ + +NI    H+D+ +ILFHFNPR+R     V +N++++ +WG    ++P  + P +F   S+ L +QI   G+ + ID K+C     R +LP N   LTLQ  + DDYG   G +V+++WWGHK  M    AT +  +    +          F  +H     V  L  + S  + +  +  L   F+ +G    V V+     S+ FV+      A  AL E+ S+ +IN
Sbjct:  264 VKFMAPEDSRRFSLNIAGPGHRDYHDILFHFNPRQREKGGQVVINDKQEGIWGSAV-NVPLSQCPIIFGQPSMTLIIQITGDGYDVFIDNKHCARLEHRTQLPPNKCPLTLQFPSTDDYGNPEGWLVYKVWWGHKAIM----ATGDLSNVAGVN---------MFSSIHPRKLFVSGLSKIHSEPEVDLRKAELERAFRKYGGAHGVSVIAPTNSSYAFVEVESERQADLALREMQSQYKIN 491          
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A024GQ01_9STRA (RRM domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQ01_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.970e-9
Identity = 54/208 (25.96%), Postives = 90/208 (43.27%), Query Frame = 0
Query:   46 NVWGQQEKHMPGPKWPDLFNVSIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPM-NGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTM--------------PGRSATKERQSKRASDPWRAGDDDDAFVDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHREKSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKA 238
            NV   +E   P  K    F  +  L + +   G+ + ++  +      R ++P+  GEDL++ I++ D +     + VH IWWGH + +              PG+ +     S R +   R         +L VGNLP   S E+       L+ +F+  G   VR+  R    GFV  R      +A+E L+    NGR++++S A
Sbjct:  326 NVDRTKEFSFPLDKDLISFGKAFSLRISVTLEGYVLMVNQVFAGKC--RHQVPIVEGEDLSISILSHDAHEDQQSIAVHRIWWGHTELLSSETNTLSSASSRSPGKQSLDRGDSNRTASGNRTSRHTPHPFELFVGNLPHGTSREE-------LSFLFEYLGYETVRITQRGS--GFVTLRSAEDMDRAVEHLNGKTFNGRILQVSCA 522          
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: UPI001D48B651 (RNA-binding protein n=1 Tax=Campylobacter sp. LMG 7974 TaxID=2790656 RepID=UPI001D48B651)

HSP 1 Score: 51.2 bits (121), Expect = 3.220e-5
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0
Query:  161 VDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFG------VIQVRVLHREKSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKA 238
            ++++VGNL             T L D F PFG      +I+ +  +R K FGFV+  D   A KA+EEL+  EI GRV+R++++
Sbjct:    1 MNIYVGNL-------SYRMTETELKDAFLPFGEVKRAKIIKDKETNRSKGFGFVEM-DDEAALKAIEELNNKEIGGRVLRVNES 76          
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A1F7JR22_9BACT (RNA-binding protein n=3 Tax=Candidatus Roizmanbacteria TaxID=1752723 RepID=A0A1F7JR22_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 4.570e-5
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 0
Query:  163 LHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHREKSFGFVKFRDHNGAAKALEELSEVEINGR--VVRLSKAASSSR 243
            L VGNLP   +++    +  +  +I +   VI  R+  R K FGFV F +   A KA+E++SE EI GR  VV +++   +SR
Sbjct:    6 LFVGNLPWSLNNDSLREMFAQFGEIVEAI-VITDRMSGRSKGFGFVTFANEESAKKAIEQMSEFEIEGRKLVVNVARPREASR 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JWU1_9PHAE1.840e-11865.15Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
D7FJF5_ECTSI4.800e-11664.73Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A835YJA2_9STRA3.650e-4331.30Galectin n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
A0A7S0GIA8_9STRA7.140e-2439.13Galectin (Fragment) n=1 Tax=Proboscia inermis TaxI... [more]
A0A7S4K6P9_9STRA1.220e-2330.17Galectin n=3 Tax=Odontella aurita TaxID=265563 Rep... [more]
A0A024GQ01_9STRA6.970e-925.96RRM domain-containing protein n=1 Tax=Albugo candi... [more]
UPI001D48B6513.220e-536.90RNA-binding protein n=1 Tax=Campylobacter sp. LMG ... [more]
A0A1F7JR22_9BACT4.570e-537.35RNA-binding protein n=3 Tax=Candidatus Roizmanbact... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 162..236
e-value: 2.0E-9
score: 47.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 183..234
e-value: 1.0E-9
score: 38.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 161..240
score: 14.129
NoneNo IPR availableGENE3D2.60.120.200coord: 1..111
e-value: 2.6E-14
score: 54.7
NoneNo IPR availablePANTHERPTHR11346GALECTINcoord: 1..133
NoneNo IPR availablePANTHERPTHR11346:SF147GALECTINcoord: 1..133
IPR001079Galectin, carbohydrate recognition domainPFAMPF00337Gal-bind_lectincoord: 5..96
e-value: 2.7E-8
score: 33.4
IPR001079Galectin, carbohydrate recognition domainPROSITEPS51304GALECTINcoord: 1..124
score: 16.737
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 128..243
e-value: 3.7E-14
score: 54.8
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 154..241
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 1..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6147contigH-elongata_contig6147:9187..11127 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6147.13702.1mRNA_H-elongata_contig6147.13702.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6147 9187..11127 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6147.13702.1 ID=prot_H-elongata_contig6147.13702.1|Name=mRNA_H-elongata_contig6147.13702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp
IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRFVAMNNREDNVWGQ
QEKHMPGPKWPDLFNVSIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMN
GEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTMPGRSATKERQSKRASDP
WRAGDDDDAFVDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLH
REKSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKAASSSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR001079Galectin_CRD
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
IPR013320ConA-like_dom_sf