prot_H-elongata_contig6147.13701.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6147.13701.1
Unique Nameprot_H-elongata_contig6147.13701.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length264
Homology
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 1.230e-102
Identity = 174/277 (62.82%), Postives = 200/277 (72.20%), Query Frame = 0
Query:    1 MSMVESFLASLNALLAEYGMPSASVLCAALTVPILAFALIGKFGGGGRGSARGGLTSNRRKGMVLFLGPCGSGKTAMCYRLCNGT---LASTTTSMQACTYSCR------------RFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRGLLLALNKCDLKEAKASRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFIRDSV 262
            +S +ES LASL + LAEYG+PSAS++   + + I    L+GK G              +RKG+VLFLGPCGSGKTAMCYRL +G    L  T TSM+AC Y C                 S     SL+DYPGH RL GGVGEELR ADR+VF+LDGSCL+AQVAAGAELLYDVLTD S+EGC+GL+LALNK DLKEAKASRAK LLQKE++KLRGTRG L TQGEEDDMP AM LGRPGQPF+LE+DSPCEVVV  CSV  EGGLD V DF+R S+
Sbjct:   85 LSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGIXXXXXX---XXXXKRKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358          
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 5.820e-39
Identity = 78/155 (50.32%), Postives = 105/155 (67.74%), Query Frame = 0
Query:  106 SGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRGLLLALNKCDLKEAKASRAKFLLQKEIEKLRGTRGTLXTQGEEDD-MPGA-MTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 258
            S K  V++ D+PGH RL GG+  EL  +  ++F+LDG+ LS+QV  G E+LYD+LTDSS+E C+GL +  +K DLK AK  R +  L KE+E+LR TR ++  QGEED   P + + LGR GQP +L +D PC + V TCSV  EG L+ V DFI
Sbjct:   20 SSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173          
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A7S2DSR0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSR0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.330e-28
Identity = 72/196 (36.73%), Postives = 108/196 (55.10%), Query Frame = 0
Query:   64 VLFLGPCGSGKTAMCYRLCNGTLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRGLLLALNKCDLKEAK-ASRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 258
            VL +GPCG+GKT +  +LC G +A T TSM      C          +++ID+PGH R    +  +L  A  +V V+D S  S QV   ++LL+ VLT   +     +L+  NK D++ +K A R K LLQKE+E +R TRG++  +GE D   G+  LG+ G+PF  + D P     +  ++  EGGL  +  F+
Sbjct:    7 VLLIGPCGAGKTVIFQQLCYGGVAETVTSMSPAHSECTMGSKDAPKKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSN-SKQVKEASDLLFSVLTAPLLPHSTSVLVFCNKMDVEGSKSADRVKVLLQKELETMRNTRGSMSQEGE-DGSKGSRMLGQEGRPFRFDHDMPNITFASGTALAGEGGLSELTTFL 200          
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 8.220e-28
Identity = 72/203 (35.47%), Postives = 117/203 (57.64%), Query Frame = 0
Query:   60 RKGMVLFLGPCGSGKTAMCYRLCNGTLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLS--AQVAAGAELLYDVLTDSSV-EGCRGLLLALNKCDLKEAKA-SRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 258
            ++ ++L LGPCGSGKTA+ +RL +G ++  T +    T             VS++D+PGH RL     +    A ++VF++D + +S   QV   AE L+D+ T   + +    +L+A +K D   A A SR + LL+ E+ +L+GTR +L TQ +++ +P    LGR   PF  ++D+PCEVV  + S+ +  G+ P+ DFI
Sbjct:   41 KRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKETMETFPLHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239          
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.400e-27
Identity = 77/205 (37.56%), Postives = 117/205 (57.07%), Query Frame = 0
Query:   60 RKGMVLFLGPCGSGKTAMCYRLCNGTLAS--TTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLS--AQVAAGAELLYDVLTDSSVEGCR-GLLLALNKCDLKEAKA-SRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 258
            ++ ++L +GPCG GKTA+ +RL +G   +  T TSM+    S   F     + VS++D+PGH RL   V +    A +LVFV+D + +S  AQV   AE L+DV T   +      +L+A +K DL  A A  R + LL+ E+ +L+ TR +L    +++ +P    LGR   PF  ++D+PCEVV  T S+ S   + P+ DFI
Sbjct:   41 KRDVILLVGPCGGGKTALFHRLRDGPSPTLETVTSMKETLESFPLFDEDSAN-VSVLDFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240          
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.300e-26
Identity = 76/213 (35.68%), Postives = 117/213 (54.93%), Query Frame = 0
Query:   51 ARGGLTSNRRKGMVLFLGPCGSGKTAMCYRLCNG-TLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCL--SAQVAAGAELLYDVLTDSSV-EGCRGLLLALNKCDLKEAKA-SRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 258
            A  G +   ++ ++L LGPCG GKTA+ +RL +G +   T TSM+  T             VS++D+PGH RL   V +    A +LVFV+D + +  +AQV   AE LYD+     V +    LL+A +K D+  A   S  + LL+ E+ +L+ TR +L    +++ +P    LGR   PF  ++D+PCEVV  + S+ S   + P+ DFI
Sbjct:   32 AASGSSPGGKRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239          
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.510e-26
Identity = 72/210 (34.29%), Postives = 119/210 (56.67%), Query Frame = 0
Query:   54 GLTSNRRKGMVLFLGPCGSGKTAMCYRLCNG-TLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLS--AQVAAGAELLYDVLTDSSVEGCR-GLLLALNKCD-LKEAKASRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 258
            G+ S++R  +VL +GPCG+GKTA+ +RL +G T  +T TSM+        F      F ++ D+PGH R+    G+    A +++FV+D +  +    +   AE LYD+ T   V      +++A +K D  K A ++  + LL+ E+ +L+ TR +L   GE+D+   ++ LGR   PF  +ID+PCEV     S+++   L+P+ DFI
Sbjct:   36 GIRSSKRD-IVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFPLFDEENATF-NICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240          
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A8K1FBH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBH7_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 2.550e-24
Identity = 77/212 (36.32%), Postives = 115/212 (54.25%), Query Frame = 0
Query:   54 GLTSNRRKGMVLFLGPCGSGKTAMCYRLCNGTLASTTTSM-----QACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRG-LLLALNKCDLKEAKASRA-KFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 258
            G+T N++K M + LGP G+GKTA+ ++L +G    T TSM     +   +     I  G H +S++DYPGH RL   V +       +VFV+D +  S + AA  E LYD+ +++        +L+A NK D+K A      K  L+KE+ KL+ TR +L T+GEED     + +GR G  F   +D+PCEV     S  + G +D V  F+
Sbjct:   48 GITGNKKK-MTMLLGPRGAGKTALFHQLRDGRFVETVTSMTELEGKFAVHDRYNTINFGAH-LSIVDYPGHERLRSRVADYYPVTGCVVFVVDAADQSFRKAA--EYLYDIFSNAKFNDLAPRMLIACNKTDIKSAATVEVVKEALEKELTKLKKTRSSLETEGEEDT--SVVPVGRDGVAFEFAVDAPCEVTFVKSSFKA-GDVDDVATFV 252          
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A2D4C0M5_PYTIN (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0M5_PYTIN)

HSP 1 Score: 103 bits (257), Expect = 7.550e-23
Identity = 74/211 (35.07%), Postives = 117/211 (55.45%), Query Frame = 0
Query:   55 LTSNRRKGMVLFLGPCGSGKTAMCYRLCNGTLASTTTSMQA-----CTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRG-LLLALNKCDLKEAKASRA-KFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 258
            +T N+++ M L LG  G+GKTA+ ++L +G    T TSM+        +     I  G H +++ID+PGH R    V +       +VF++D +  S + AA  E LYD+ +++        +L+A NK DL  A +  A K  L+KE+ KL+ TR +L T+GEED     + +GR G  F  ++D+PCEV  T CSV  +G ++ +  F+
Sbjct:   51 ITGNKKR-MTLLLGARGAGKTALFHQLRDGRFVETVTSMKELEGKFAVHPSYNTINFGAH-LTVIDFPGHERQRSRVADFYPVTGCVVFLVDAADPSFRKAA--EFLYDIFSNAKFNDVAPKMLIACNKSDLSSAASVDAVKEALEKELTKLKKTRSSLETEGEEDT--STVPVGRDGAAFQFDVDAPCEVSFTRCSV-KKGDMEELSTFV 254          
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC)

HSP 1 Score: 101 bits (251), Expect = 4.180e-22
Identity = 71/222 (31.98%), Postives = 116/222 (52.25%), Query Frame = 0
Query:   42 KFGGGGRGSARGGLTSNRRKGMVLFLGPCGSGKTAMCYRLCNG-TLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLS--AQVAAGAELLYDVLTDSSVEGCR-GLLLALNKCD-LKEAKASRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 258
            K  GGG G    G      + +VL +GPCG+GKTA+ +RL NG T   T TSM+  T             +S+ D+PGH R+     +    A +++FV+D +  +  + +   AE LYD+ T   +      +++A +K D +K A  +  + LL+ E+ +L+ TR +L   G++D+   ++ LGR    F   ID+PC+V     S+ +   L+P+ DFI
Sbjct:   29 KLCGGGAGLGGSG------RDVVLLVGPCGAGKTALFHRLRNGPTKVETVTSMKE-TMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI1.230e-10262.82Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA5.820e-3950.32Signal recognition particle receptor subunit beta ... [more]
A0A7S2DSR0_9STRA6.330e-2836.73Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA8.220e-2835.47Signal recognition particle receptor subunit beta ... [more]
A0A485KDV8_9STRA6.400e-2737.56Signal recognition particle receptor subunit beta ... [more]
A0A024TLZ7_9STRA9.300e-2635.68Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA9.510e-2634.29Signal recognition particle receptor subunit beta ... [more]
A0A8K1FBH7_PYTOL2.550e-2436.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C0M5_PYTIN7.550e-2335.07Signal recognition particle receptor subunit beta ... [more]
A0A067D7V6_SAPPC4.180e-2231.98Signal recognition particle receptor subunit beta ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019009Signal recognition particle receptor, beta subunitPFAMPF09439SRPRBcoord: 61..230
e-value: 7.4E-24
score: 84.2
IPR019009Signal recognition particle receptor, beta subunitPANTHERPTHR11485:SF34SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT BETAcoord: 23..260
NoneNo IPR availableGENE3D3.40.50.300coord: 56..260
e-value: 4.7E-39
score: 136.1
NoneNo IPR availablePANTHERPTHR11485TRANSFERRINcoord: 23..260
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 41..263
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 64..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6147contigH-elongata_contig6147:6856..7647 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6147.13701.1mRNA_H-elongata_contig6147.13701.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6147 6681..8072 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6147.13701.1 ID=prot_H-elongata_contig6147.13701.1|Name=mRNA_H-elongata_contig6147.13701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MSMVESFLASLNALLAEYGMPSASVLCAALTVPILAFALIGKFGGGGRGS
ARGGLTSNRRKGMVLFLGPCGSGKTAMCYRLCNGTLASTTTSMQACTYSC
RRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVA
AGAELLYDVLTDSSVEGCRGLLLALNKCDLKEAKASRAKFLLQKEIEKLR
GTRGTLGTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGG
LDPVEDFIRDSVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019009SRP_receptor_beta_su
IPR027417P-loop_NTPase