mRNA_H-elongata_contig6147.13701.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6147.13701.1
Unique NamemRNA_H-elongata_contig6147.13701.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 7.800e-104
Identity = 184/298 (61.74%), Postives = 212/298 (71.14%), Query Frame = 2 
Query:  116 GDVGNVVTQVLASAKGNAAA-MSMVESFLASLNALLAEYGMPSASVLCAALTVPILAFALIGKFGGGGRGSARGGLTSNRRKGMVLFLGPCGSGKTAMCYRLCNGT---LASTTTSMQACTYSCR------------RFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRGLLLALNKCDLKEAKASRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFIRDSV 961
            G++  VV Q LAS    AAA +S +ES LASL + LAEYG+PSAS++   + + I    L+GK G              +RKG+VLFLGPCGSGKTAMCYRL +G    L  T TSM+AC Y C                 S     SL+DYPGH RL GGVGEELR ADR+VF+LDGSCL+AQVAAGAELLYDVLTD S+EGC+GL+LALNK DLKEAKASRAK LLQKE++KLRGTRG L TQGEEDDMP AM LGRPGQPF+LE+DSPCEVVV  CSV  EGGLD V DF+R S+
Sbjct:   64 GEIAGVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGIXXXXXX---XXXXKRKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.170e-36
Identity = 78/155 (50.32%), Postives = 105/155 (67.74%), Query Frame = 2 
Query:  491 SGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRGLLLALNKCDLKEAKASRAKFLLQKEIEKLRGTRGTLXTQGEEDD-MPGA-MTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 949
            S K  V++ D+PGH RL GG+  EL  +  ++F+LDG+ LS+QV  G E+LYD+LTDSS+E C+GL +  +K DLK AK  R +  L KE+E+LR TR ++  QGEED   P + + LGR GQP +L +D PC + V TCSV  EG L+ V DFI
Sbjct:   20 SSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A7S2DSR0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSR0_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.770e-26
Identity = 72/196 (36.73%), Postives = 108/196 (55.10%), Query Frame = 2 
Query:  365 VLFLGPCGSGKTAMCYRLCNGTLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRGLLLALNKCDLKEAK-ASRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 949
            VL +GPCG+GKT +  +LC G +A T TSM      C          +++ID+PGH R    +  +L  A  +V V+D S  S QV   ++LL+ VLT   +     +L+  NK D++ +K A R K LLQKE+E +R TRG++  +GE D   G+  LG+ G+PF  + D P     +  ++  EGGL  +  F+
Sbjct:    7 VLLIGPCGAGKTVIFQQLCYGGVAETVTSMSPAHSECTMGSKDAPKKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSN-SKQVKEASDLLFSVLTAPLLPHSTSVLVFCNKMDVEGSKSADRVKVLLQKELETMRNTRGSMSQEGE-DGSKGSRMLGQEGRPFRFDHDMPNITFASGTALAGEGGLSELTTFL 200
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.410e-26
Identity = 72/203 (35.47%), Postives = 117/203 (57.64%), Query Frame = 2 
Query:  353 RKGMVLFLGPCGSGKTAMCYRLCNGTLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLS--AQVAAGAELLYDVLTDSSV-EGCRGLLLALNKCDLKEAKA-SRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 949
            ++ ++L LGPCGSGKTA+ +RL +G ++  T +    T             VS++D+PGH RL     +    A ++VF++D + +S   QV   AE L+D+ T   + +    +L+A +K D   A A SR + LL+ E+ +L+GTR +L TQ +++ +P    LGR   PF  ++D+PCEVV  + S+ +  G+ P+ DFI
Sbjct:   41 KRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKETMETFPLHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.530e-25
Identity = 77/205 (37.56%), Postives = 117/205 (57.07%), Query Frame = 2 
Query:  353 RKGMVLFLGPCGSGKTAMCYRLCNGTLAS--TTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLS--AQVAAGAELLYDVLTDSSVEGCR-GLLLALNKCDLKEAKA-SRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 949
            ++ ++L +GPCG GKTA+ +RL +G   +  T TSM+    S   F     + VS++D+PGH RL   V +    A +LVFV+D + +S  AQV   AE L+DV T   +      +L+A +K DL  A A  R + LL+ E+ +L+ TR +L    +++ +P    LGR   PF  ++D+PCEVV  T S+ S   + P+ DFI
Sbjct:   41 KRDVILLVGPCGGGKTALFHRLRDGPSPTLETVTSMKETLESFPLFDEDSAN-VSVLDFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.760e-24
Identity = 76/213 (35.68%), Postives = 117/213 (54.93%), Query Frame = 2 
Query:  326 ARGGLTSNRRKGMVLFLGPCGSGKTAMCYRLCNG-TLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCL--SAQVAAGAELLYDVLTDSSV-EGCRGLLLALNKCDLKEAKA-SRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 949
            A  G +   ++ ++L LGPCG GKTA+ +RL +G +   T TSM+  T             VS++D+PGH RL   V +    A +LVFV+D + +  +AQV   AE LYD+     V +    LL+A +K D+  A   S  + LL+ E+ +L+ TR +L    +++ +P    LGR   PF  ++D+PCEVV  + S+ S   + P+ DFI
Sbjct:   32 AASGSSPGGKRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.890e-24
Identity = 72/210 (34.29%), Postives = 119/210 (56.67%), Query Frame = 2 
Query:  335 GLTSNRRKGMVLFLGPCGSGKTAMCYRLCNG-TLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLS--AQVAAGAELLYDVLTDSSVEGCR-GLLLALNKCD-LKEAKASRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 949
            G+ S++R  +VL +GPCG+GKTA+ +RL +G T  +T TSM+        F      F ++ D+PGH R+    G+    A +++FV+D +  +    +   AE LYD+ T   V      +++A +K D  K A ++  + LL+ E+ +L+ TR +L   GE+D+   ++ LGR   PF  +ID+PCEV     S+++   L+P+ DFI
Sbjct:   36 GIRSSKRD-IVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFPLFDEENATF-NICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A8K1FBH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBH7_PYTOL)

HSP 1 Score: 106 bits (265), Expect = 1.360e-22
Identity = 77/212 (36.32%), Postives = 115/212 (54.25%), Query Frame = 2 
Query:  335 GLTSNRRKGMVLFLGPCGSGKTAMCYRLCNGTLASTTTSM-----QACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRG-LLLALNKCDLKEAKASRA-KFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 949
            G+T N++K M + LGP G+GKTA+ ++L +G    T TSM     +   +     I  G H +S++DYPGH RL   V +       +VFV+D +  S + AA  E LYD+ +++        +L+A NK D+K A      K  L+KE+ KL+ TR +L T+GEED     + +GR G  F   +D+PCEV     S  + G +D V  F+
Sbjct:   48 GITGNKKK-MTMLLGPRGAGKTALFHQLRDGRFVETVTSMTELEGKFAVHDRYNTINFGAH-LSIVDYPGHERLRSRVADYYPVTGCVVFVVDAADQSFRKAA--EYLYDIFSNAKFNDLAPRMLIACNKTDIKSAATVEVVKEALEKELTKLKKTRSSLETEGEEDT--SVVPVGRDGVAFEFAVDAPCEVTFVKSSFKA-GDVDDVATFV 252
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A2D4C0M5_PYTIN (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0M5_PYTIN)

HSP 1 Score: 102 bits (255), Expect = 3.350e-21
Identity = 74/211 (35.07%), Postives = 117/211 (55.45%), Query Frame = 2 
Query:  338 LTSNRRKGMVLFLGPCGSGKTAMCYRLCNGTLASTTTSMQA-----CTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVAAGAELLYDVLTDSSVEGCRG-LLLALNKCDLKEAKASRA-KFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 949
            +T N+++ M L LG  G+GKTA+ ++L +G    T TSM+        +     I  G H +++ID+PGH R    V +       +VF++D +  S + AA  E LYD+ +++        +L+A NK DL  A +  A K  L+KE+ KL+ TR +L T+GEED     + +GR G  F  ++D+PCEV  T CSV  +G ++ +  F+
Sbjct:   51 ITGNKKR-MTLLLGARGAGKTALFHQLRDGRFVETVTSMKELEGKFAVHPSYNTINFGAH-LTVIDFPGHERQRSRVADFYPVTGCVVFLVDAADPSFRKAA--EFLYDIFSNAKFNDVAPKMLIACNKSDLSSAASVDAVKEALEKELTKLKKTRSSLETEGEEDT--STVPVGRDGAAFQFDVDAPCEVSFTRCSV-KKGDMEELSTFV 254
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BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC)

HSP 1 Score: 100 bits (249), Expect = 1.660e-20
Identity = 71/222 (31.98%), Postives = 116/222 (52.25%), Query Frame = 2 
Query:  299 KFGGGGRGSARGGLTSNRRKGMVLFLGPCGSGKTAMCYRLCNG-TLASTTTSMQACTYSCRRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLS--AQVAAGAELLYDVLTDSSVEGCR-GLLLALNKCD-LKEAKASRAKFLLQKEIEKLRGTRGTLXTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGGLDPVEDFI 949
            K  GGG G    G      + +VL +GPCG+GKTA+ +RL NG T   T TSM+  T             +S+ D+PGH R+     +    A +++FV+D +  +  + +   AE LYD+ T   +      +++A +K D +K A  +  + LL+ E+ +L+ TR +L   G++D+   ++ LGR    F   ID+PC+V     S+ +   L+P+ DFI
Sbjct:   29 KLCGGGAGLGGSG------RDVVLLVGPCGAGKTALFHRLRNGPTKVETVTSMKE-TMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6147.13701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI7.800e-10461.74Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA1.170e-3650.32Signal recognition particle receptor subunit beta ... [more]
A0A7S2DSR0_9STRA4.770e-2636.73Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA6.410e-2635.47Signal recognition particle receptor subunit beta ... [more]
A0A485KDV8_9STRA4.530e-2537.56Signal recognition particle receptor subunit beta ... [more]
A0A024TLZ7_9STRA5.760e-2435.68Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA5.890e-2434.29Signal recognition particle receptor subunit beta ... [more]
A0A8K1FBH7_PYTOL1.360e-2236.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C0M5_PYTIN3.350e-2135.07Signal recognition particle receptor subunit beta ... [more]
A0A067D7V6_SAPPC1.660e-2031.98Signal recognition particle receptor subunit beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6147contigH-elongata_contig6147:6681..8072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.1
Seed ortholog evalue3.2e-83
Seed eggNOG ortholog2880.D7FJF4
Preferred nameSRPRB
KEGG koko:K12272,ko:K13343,ko:K14736
KEGG TC3.A.20.1,3.A.5.8
KEGG Pathwayko03060,ko04066,ko04146,ko04216,ko04978,map03060,map04066,map04146,map04216,map04978
GOsGO:0000041,GO:0000166,GO:0001666,GO:0001882,GO:0001883,GO:0002164,GO:0002165,GO:0002168,GO:0002526,GO:0003002,GO:0003674,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005506,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0005856,GO:0005874,GO:0005881,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006886,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0007399,GO:0007591,GO:0008104,GO:0008150,GO:0008199,GO:0008219,GO:0008284,GO:0008363,GO:0009628,GO:0009719,GO:0009725,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010288,GO:0010720,GO:0012501,GO:0012505,GO:0014013,GO:0014015,GO:0014070,GO:0014074,GO:0015031,GO:0015630,GO:0015682,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019725,GO:0019899,GO:0022008,GO:0023052,GO:0030001,GO:0030003,GO:0030154,GO:0030176,GO:0030867,GO:0030968,GO:0031012,GO:0031090,GO:0031224,GO:0031227,GO:0031625,GO:0031641,GO:0031643,GO:0031644,GO:0031646,GO:0031984,GO:0032354,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034698,GO:0034976,GO:0035017,GO:0035293,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036293,GO:0036498,GO:0040003,GO:0042127,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042592,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044057,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045595,GO:0045597,GO:0046683,GO:0046872,GO:0046907,GO:0046914,GO:0046916,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051286,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060284,GO:0062023,GO:0065007,GO:0065008,GO:0070445,GO:0070447,GO:0070482,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071320,GO:0071371,GO:0071372,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072512,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098771,GO:0098796,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901265,GO:1901363,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:2000026,GO:2000177,GO:2000179
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG2229@1,KOG0090@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko04031,ko04131,ko04147
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSRPRB, beta subunit of the signal recognition particle receptor
Ec32 orthologEc-14_006140.1
Exons1
Model size1392
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6147.13701.1prot_H-elongata_contig6147.13701.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6147 6856..7647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.3498325-UTR-H-elongata_contig6147:6680..68551622930992.3498325-UTR-H-elongata_contig6147:6680..6855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6147 6681..6855 +
1691679653.8142257-UTR-H-elongata_contig6147:6680..68551691679653.8142257-UTR-H-elongata_contig6147:6680..6855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6147 6681..6855 +
1622930992.3869262-UTR-H-elongata_contig6147:7647..80721622930992.3869262-UTR-H-elongata_contig6147:7647..8072Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6147 7648..8072 +
1691679653.8370807-UTR-H-elongata_contig6147:7647..80721691679653.8370807-UTR-H-elongata_contig6147:7647..8072Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6147 7648..8072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.368048-CDS-H-elongata_contig6147:6855..76471622930992.368048-CDS-H-elongata_contig6147:6855..7647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6147 6856..7647 +
1691679653.8275087-CDS-H-elongata_contig6147:6855..76471691679653.8275087-CDS-H-elongata_contig6147:6855..7647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6147 6856..7647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6147.13701.1

>prot_H-elongata_contig6147.13701.1 ID=prot_H-elongata_contig6147.13701.1|Name=mRNA_H-elongata_contig6147.13701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MSMVESFLASLNALLAEYGMPSASVLCAALTVPILAFALIGKFGGGGRGS
ARGGLTSNRRKGMVLFLGPCGSGKTAMCYRLCNGTLASTTTSMQACTYSC
RRFIPSGKHFVSLIDYPGHARLWGGVGEELRRADRLVFVLDGSCLSAQVA
AGAELLYDVLTDSSVEGCRGLLLALNKCDLKEAKASRAKFLLQKEIEKLR
GTRGTLGTQGEEDDMPGAMTLGRPGQPFNLEIDSPCEVVVTTCSVMSEGG
LDPVEDFIRDSVR*
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mRNA from alignment at H-elongata_contig6147:6681..8072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6147.13701.1 ID=mRNA_H-elongata_contig6147.13701.1|Name=mRNA_H-elongata_contig6147.13701.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1392bp|location=Sequence derived from alignment at H-elongata_contig6147:6681..8072+ (Himanthalia elongata Himel1 dioecious)
TATCGAAGAAATATACGCTGAAGGCAGCAGCAGTACTGGCACCGGTGGCG
GCAGCGTAAACAACGATGTGAATGAGGAAGCGCTCTCGACCACCACCGTA
GATCGACAAGCGTTTGGGGATGTTGGTAATGTGGTGACCCAAGTGCTCGC
GTCTGCAAAAGGAAACGCCGCCGCAATGTCGATGGTGGAATCGTTTCTTG
CTTCGCTCAATGCCCTTCTCGCCGAGTACGGCATGCCTTCTGCCTCGGTA
CTCTGCGCGGCGCTTACCGTACCGATTCTTGCTTTTGCCTTGATCGGAAA
GTTTGGCGGTGGTGGAAGGGGCAGCGCCCGTGGCGGTTTGACGTCGAACA
GACGCAAGGGTATGGTCCTGTTCCTCGGACCGTGTGGTTCTGGCAAGACC
GCTATGTGCTATCGCCTCTGCAACGGTACACTCGCTTCTACCACCACATC
GATGCAGGCCTGCACGTACAGCTGCAGGAGGTTTATCCCTAGCGGCAAGC
ACTTTGTCTCCCTGATAGATTATCCGGGACATGCGAGGCTTTGGGGTGGC
GTGGGCGAGGAGCTTCGAAGGGCCGATCGCCTTGTTTTTGTCCTGGACGG
GTCTTGCCTGTCCGCCCAGGTCGCTGCCGGCGCGGAGCTCCTATATGACG
TCCTGACGGATAGTTCCGTCGAAGGATGCCGAGGGCTATTGCTAGCACTC
AACAAGTGCGACCTCAAGGAGGCCAAAGCAAGTCGAGCCAAGTTCCTGCT
GCAGAAGGAAATCGAGAAGCTCAGGGGCACCCGCGGGACTCTTGGTACTC
AGGGCGAGGAGGACGACATGCCAGGGGCGATGACGCTCGGTCGGCCGGGC
CAGCCGTTCAACCTAGAGATAGACTCCCCTTGCGAGGTGGTTGTCACCAC
CTGCTCGGTGATGAGCGAGGGGGGTCTCGATCCGGTTGAAGATTTCATCC
GCGACTCGGTGCGCTAGGAGGTTCGAGGTTTGGTAATACAGTTTGCTCGT
CGTGGTGACGGCCTTTCGTGATTGAAAGCGTCGGGAGCTCTTCCAGATTG
TTGGAAGAGGTTCCAATGGGGTAGTTTATTAGATTTCAGAATCGTTCGGC
GTTGGCGTTAAAAGCAGATAACATCCACTTGTGCAACACGACAACTGCAC
GTTCCTTTGTGTAGGGGGGTTATTCGCCGAATGGACGTTTATTCGCTGAA
TGGATAAAATACGCAAGAGTTTTTCGACATAATCCAGGCGGGCGGTCGCG
CGGTGCAGAGTCTTTGCTCCTATATCGAGTGGTGTGCTGGGTGTAGTATT
AGTAGAACCACTCTCTTGCTCTGAATCAAAATAAAACATCAATAATCCGT
TCGCAATCAAGGCGAATAACATGGCCCTTTTGCCAGATGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig6147:6681..8072+

>mRNA_H-elongata_contig6147.13701.1 ID=mRNA_H-elongata_contig6147.13701.1|Name=mRNA_H-elongata_contig6147.13701.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig6147:6681..8072+ (Himanthalia elongata Himel1 dioecious)
ATGTCGATGGTGGAATCGTTTCTTGCTTCGCTCAATGCCCTTCTCGCCGA
GTACGGCATGCCTTCTGCCTCGGTACTCTGCGCGGCGCTTACCGTACCGA
TTCTTGCTTTTGCCTTGATCGGAAAGTTTGGCGGTGGTGGAAGGGGCAGC
GCCCGTGGCGGTTTGACGTCGAACAGACGCAAGGGTATGGTCCTGTTCCT
CGGACCGTGTGGTTCTGGCAAGACCGCTATGTGCTATCGCCTCTGCAACG
GTACACTCGCTTCTACCACCACATCGATGCAGGCCTGCACGTACAGCTGC
AGGAGGTTTATCCCTAGCGGCAAGCACTTTGTCTCCCTGATAGATTATCC
GGGACATGCGAGGCTTTGGGGTGGCGTGGGCGAGGAGCTTCGAAGGGCCG
ATCGCCTTGTTTTTGTCCTGGACGGGTCTTGCCTGTCCGCCCAGGTCGCT
GCCGGCGCGGAGCTCCTATATGACGTCCTGACGGATAGTTCCGTCGAAGG
ATGCCGAGGGCTATTGCTAGCACTCAACAAGTGCGACCTCAAGGAGGCCA
AAGCAAGTCGAGCCAAGTTCCTGCTGCAGAAGGAAATCGAGAAGCTCAGG
GGCACCCGCGGGACTCTTGGTACTCAGGGCGAGGAGGACGACATGCCAGG
GGCGATGACGCTCGGTCGGCCGGGCCAGCCGTTCAACCTAGAGATAGACT
CCCCTTGCGAGGTGGTTGTCACCACCTGCTCGGTGATGAGCGAGGGGGGT
CTCGATCCGGTTGAAGATTTCATCCGCGACTCGGTGCGCTAGATGTCGAT
GGTGGAATCGTTTCTTGCTTCGCTCAATGCCCTTCTCGCCGAGTACGGCA
TGCCTTCTGCCTCGGTACTCTGCGCGGCGCTTACCGTACCGATTCTTGCT
TTTGCCTTGATCGGAAAGTTTGGCGGTGGTGGAAGGGGCAGCGCCCGTGG
CGGTTTGACGTCGAACAGACGCAAGGGTATGGTCCTGTTCCTCGGACCGT
GTGGTTCTGGCAAGACCGCTATGTGCTATCGCCTCTGCAACGGTACACTC
GCTTCTACCACCACATCGATGCAGGCCTGCACGTACAGCTGCAGGAGGTT
TATCCCTAGCGGCAAGCACTTTGTCTCCCTGATAGATTATCCGGGACATG
CGAGGCTTTGGGGTGGCGTGGGCGAGGAGCTTCGAAGGGCCGATCGCCTT
GTTTTTGTCCTGGACGGGTCTTGCCTGTCCGCCCAGGTCGCTGCCGGCGC
GGAGCTCCTATATGACGTCCTGACGGATAGTTCCGTCGAAGGATGCCGAG
GGCTATTGCTAGCACTCAACAAGTGCGACCTCAAGGAGGCCAAAGCAAGT
CGAGCCAAGTTCCTGCTGCAGAAGGAAATCGAGAAGCTCAGGGGCACCCG
CGGGACTCTTGGTACTCAGGGCGAGGAGGACGACATGCCAGGGGCGATGA
CGCTCGGTCGGCCGGGCCAGCCGTTCAACCTAGAGATAGACTCCCCTTGC
GAGGTGGTTGTCACCACCTGCTCGGTGATGAGCGAGGGGGGTCTCGATCC
GGTTGAAGATTTCATCCGCGACTCGGTGCGCTAG
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