mRNA_H-elongata_contig61360.13689.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 167 bits (422), Expect = 4.880e-43 Identity = 107/278 (38.49%), Postives = 155/278 (55.76%), Query Frame = 1
Query: 7 ELVVATWNVRTMSERGTNSPGR-AEDLLMFAAKYECDFIAIQETRRDGRTTIQEPSAGYIVHCSGHCDGDGGKPWILGVGLSVRESIARALGPGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETA------PTRHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPKRGGNSDAFTYEGPKESHRWRMDY-LVRQHDCRLARNTTVHPK--MKSDHRLISVSIR 810
+L T+NVRT++ G N G ++ A +CD I +QETRR G+ I GY++ SG G K + GVG++++E++ ++G GG E IS L+KVR+ TF+V YAPTETA K FW L + + EV DHL++++ ANARTG R +G D +++G YGRD ++ NG RLL AA ++LS++ T+F TPK G + KE HR +D+ L+RQ D RL RN +V SDH L+ ++R
Sbjct: 89 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 360
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 155 bits (393), Expect = 3.520e-39 Identity = 98/252 (38.89%), Postives = 142/252 (56.35%), Query Frame = 1
Query: 82 LLMFAAKYECDFIAIQETRRDGRTTIQEPSAGYIVHCSGHCDGDGGKPWILGVGLSVRESIARALGPGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETA------PTRHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPKRGGNSDAFTYEGPKESHRWRMDY-LVRQHDCRLARNTTVHPK--MKSDHRLISVSIR 810
++ A +CD I +QETRR G+ I GY++ SG G K + GVG++++E++ ++G GG E IS L+KVR+ TF+V YAPTETA K FW L + + EV DHL++++ ANARTG R +G D +++G YGRD ++ NG RLL AA ++LS++ T+F TPK G + KE HR +D+ L+RQ D RL RN +V SDH L+ ++R
Sbjct: 3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 248
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 141 bits (355), Expect = 2.090e-37 Identity = 91/230 (39.57%), Postives = 134/230 (58.26%), Query Frame = 1
Query: 82 LLMFAAKYECDFIAIQETRRDGRTTIQEPSAGYIVHCSGHCDGDGGKPWILGVGLSVRESIARALGPGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETA------PTRHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPKRGGNSDAFTYEGPKESHRWRMDY-LVRQHDCRLAR 750
++ A +CD I +QETRR G+ I GY++ SG G K + GVG++++E++ ++G GG E IS L+KVR+ TF+V YAPTETA K FW L + + EV DHL++++ ANARTG R +G D +++G YGRD ++ NG RLL AA ++LS++ T+ TPK G ++ + +G KE HR +D+ L+RQ D RL R
Sbjct: 3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPK-GVHTFQSSNKG-KEKHR--LDFILMRQTDRRLVR 224
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 143 bits (360), Expect = 3.010e-37 Identity = 93/253 (36.76%), Postives = 140/253 (55.34%), Query Frame = 1
Query: 7 ELVVATWNVRTMSERGTNSPGR-AEDLLMFAAKYECDFIAIQETRRDGRTTIQEPSAGYIVHCSGHCDGDGGKPWILGVGLSVRESIARALGPGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETAPT------RHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPKRGGNSDAFTYEGPKESHRWRMDYLVRQHDCRL 744
+L T+NV T++ G N G ++ + CD I +QETRR+G+ +I GY++ SG G K GVG++++E+I ++G G E IS L+KVR+ TF+V YAPTET + K FW L + + EV DHL++++GANARTG R +G D +++G GRD ++ NG RLL A+ ++LS+ T+F TPK GG F K ++R+D+++ Q D RL
Sbjct: 8 DLSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDG--CCDAKIMGANGRDIMNNNGERLLELASDNQLSLTNTYFPTPK-GGVQHTFQSSN-KGKEKYRLDFILMQ-DSRL 253
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.910e-32 Identity = 96/285 (33.68%), Postives = 146/285 (51.23%), Query Frame = 1
Query: 7 ELVVATWNVRTMSERGTNSPGR-AEDLLMFAAKYECDFIAIQETRRDGRTTIQEPSAGYIVHCSGHCDGDGGKPWILGVGLSVRESIARALGPGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETAPT-----RHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPKRGGNSDAFTYEGPKESHRWRMDY-LVRQHDCRLARNTTVHPKMKSDHRLISVSIRLLDGTHPTAA 840
++ T+NVRT++ G N G ++ + CD I +QETRR+G+ +I GY+V SG G K + GVG++++E++ + G G E IS L+KVR+ TF+V YAP T K W L + + EV DHL++++ ANA TGGR +G D +++G YGRD ++ NG R L A ++LS+ T+F TPK GG F K ++ +D+ L+RQ D R + VH + + S + L G T+A
Sbjct: 122 DVSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHD--GYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAIREVHSRDHLVVLMDANAHTGGRRDG--CCDAKIMGAYGRDIMNNNGERFLGLALGNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYGLDFILMRQTDRRFVQRL-VHERSAARDSEASKEKQQLRGVSKTSA 399
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5K6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H7_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.040e-31 Identity = 91/245 (37.14%), Postives = 135/245 (55.10%), Query Frame = 1
Query: 124 IQETRRDGRTTIQEPSAGYIVHCSGHCDGDGGKPWILGVGLSVRESIARALGPGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETAPT------RHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPKRGGNSDAFTYEGPKESHRWRMDY-LVRQHDCRLARNTTVHPK--MKSDHRLISVSIRLLDGTHP 831
+QETRR G+ +I GY++ SG G K + GVG++++E++ ++G G E IS L+KVR+ TF+V YAP ETA T K FW L + + EV DHL++++ ANARTG R +G D +++G YGRD ++ NG RLL A+ ++LS+ T+F TP+ GG F K ++R+D+ L+RQ D R RN +V SD L+ ++RL P
Sbjct: 12 LQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPMETARTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPE-GGVQHTFRSSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDQYLVLTTVRLSPRVAP 250
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.100e-26 Identity = 80/197 (40.61%), Postives = 109/197 (55.33%), Query Frame = 1
Query: 253 RESIARALG--PGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETA------PTRHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPKRGGNSDAFTYEGPKESHRWRMDY-LVRQHDCRLARNTTVHPK--MKSDHRLISVSIR 810
R+ I A G GG E IS L+KVR+ TF+V YAPTETA K FW L + + EV DHL++++ ANARTG R +G D +++G YGRD ++ NG RLL AA ++LS++ T+F TPK G + KE HR +D+ L+RQ D RL RN +V SDH L+ ++R
Sbjct: 289 RKRIGEAAGGGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLERNASVKRVDFKDSDHNLVHTTVR 481
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5KRE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE7_9PHAE) HSP 1 Score: 115 bits (289), Expect = 8.280e-26 Identity = 89/278 (32.01%), Postives = 132/278 (47.48%), Query Frame = 1
Query: 7 ELVVATWNVRTMSERGTNSPGR-AEDLLMFAAKYECDFIAIQETRRDGRTTIQEPSAGYIVHCSGHCDGDGGKPWILGVGLSVRESIARALGPGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETAPT------RHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPKRGGNSDAFTYEGP-KESHRWRMDY-LVRQHDCRLARNTTVH--PKMKSDHRLISVSI 807
+L T++VRT++ G N G ++ + CD + +QETRR G+ G I H DG E IS L+KVR+ TF+V YAP +T T K FW L + + E DHL++++GANARTG R +G D +++G YGRD ++ NG RLL A+ + LS+ T+F TP+ G T++ P K ++R+D+ L+RQ D R RN +V SDH L+ ++
Sbjct: 62 DLSFGTFDVRTLAYSGRNPIGHNVMTVMQICSATGCDVMGLQETRRKGQ--------GSIAH-------DG-------------------------TVECISPRLMKVRLTIGRTCGVTFVVGYAPAKTVRTTAGGDLNAKDSFWTALDAALREFQSRDHLVVLMGANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNHLSLTNTYFRTPEGGVRH---TFQSPNKGKEKYRLDFILMRQTDRRFVRNVSVKRIDFKDSDHNLVLTTV 294
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE) HSP 1 Score: 114 bits (284), Expect = 8.790e-25 Identity = 74/189 (39.15%), Postives = 106/189 (56.08%), Query Frame = 1
Query: 271 ALGPGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETA------PTRHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPKRGGNSDAFTYEGPKESHRWRMDY-LVRQHDCRLARNTTVHPKM--KSDHRLISVSIR 810
++G G E IS L+KVR+ TF+V YAPTETA K FW L + + EV DHL++++ ANARTG R +G D +++G YGRD ++ NG RLL AA ++LS++ T+F TPK GG F K ++R+D+ L+RQ D R RN +V +DH L+ ++R
Sbjct: 4 SVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQTDRRFVRNVSVKSVAFKDADHNLVHTTVR 188
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Match: A0A6H5KDU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU8_9PHAE) HSP 1 Score: 101 bits (252), Expect = 3.120e-23 Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 1
Query: 271 ALGPGGIVPEHISAWLVKVRVIFKHRAVTTFIVVYAPTETA------PTRHKSKFWKELRSTVAEVPVSDHLILMVGANARTGGREEGGGLGDVRVLGPYGRDTLDGNGPRLLACAAKHKLSIVITFFSTPK 648
++G GG E IS L+KVR+ TF+V YAPTETA K FW L + + EV DHL++++ ANARTG R +G D +++G YGRD ++ NG RLL AA ++LS++ T+F TPK
Sbjct: 4 SVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CSDAKIMGAYGRDVMNNNGERLLGLAADNRLSLINTYFRTPK 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61360.13689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61360.13689.1 >prot_H-elongata_contig61360.13689.1 ID=prot_H-elongata_contig61360.13689.1|Name=mRNA_H-elongata_contig61360.13689.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp SKELVVATWNVRTMSERGTNSPGRAEDLLMFAAKYECDFIAIQETRRDGRback to top mRNA from alignment at H-elongata_contig61360:2275..3117+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61360.13689.1 ID=mRNA_H-elongata_contig61360.13689.1|Name=mRNA_H-elongata_contig61360.13689.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig61360:2275..3117+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61360:2275..3117+ >mRNA_H-elongata_contig61360.13689.1 ID=mRNA_H-elongata_contig61360.13689.1|Name=mRNA_H-elongata_contig61360.13689.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig61360:2275..3117+ (Himanthalia elongata Himel1 dioecious)back to top |