mRNA_H-elongata_contig61345.13687.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61345.13687.1
Unique NamemRNA_H-elongata_contig61345.13687.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: A0A6H5KAF7_9PHAE (FAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.560e-33
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLPPRC 183
            +FMKAIKWTKKIMYEEGHALPQLIHMWH+IVRHPALFYSCRSHF+GQMVNSLSRLGLPP C
Sbjct: 1380 EFMKAIKWTKKIMYEEGHALPQLIHMWHMIVRHPALFYSCRSHFVGQMVNSLSRLGLPPNC 1440
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BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.560e-33
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLPPRC 183
            +FMKAIKWTKKIMYEEGHALPQLIHMWH+IVRHPALFYSCRSHF+GQMVNSLSRLGLPP C
Sbjct: 2411 EFMKAIKWTKKIMYEEGHALPQLIHMWHMIVRHPALFYSCRSHFVGQMVNSLSRLGLPPNC 2471
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BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: A0A7S2HDV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDV8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.510e-30
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLPPRC 183
            DF+KAIKWTKKIMYEEGHALPQLIHMWH++VRHPALFY+ R+ FI QMV SL+RLGLPP C
Sbjct:   34 DFIKAIKWTKKIMYEEGHALPQLIHMWHLLVRHPALFYAYRAQFIPQMVQSLNRLGLPPNC 94
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BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: A0A7S1U5K1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5K1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.210e-29
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLPPRC 183
            +F+K+IKWTKKIMYEEGHALPQLIHMW +I RHP+LFYS RS F+ QMVNSL+RLGLPP C
Sbjct:    2 EFIKSIKWTKKIMYEEGHALPQLIHMWQLITRHPSLFYSYRSQFVPQMVNSLNRLGLPPNC 62
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BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: F0YHH3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH3_AURAN)

HSP 1 Score: 107 bits (267), Expect = 1.070e-25
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLPPRC 183
            DF+KAIKWTKKIMYEEGHAL QL+HMW ++VRHP LFY  RS F+ QMVNSL+RLGLPP C
Sbjct: 2906 DFIKAIKWTKKIMYEEGHALAQLVHMWQLVVRHPTLFYPYRSQFMPQMVNSLNRLGLPPNC 2966
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BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: A0A8J2WWQ5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWQ5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.070e-25
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLPPRC 183
            DF+KA+KWTKKIMYEEGHAL QL+HMW ++VRHP LF+  RS F+ QMVNSL+RLGLPP C
Sbjct: 2187 DFVKAVKWTKKIMYEEGHALAQLVHMWQLVVRHPGLFFPYRSQFMPQMVNSLNRLGLPPNC 2247
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BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: A0A7R9U8N6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8N6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.890e-23
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLPP 177
            DF K+++WT+KIMYE+GH LPQL+HMWH+I RHP LFYS R  F+ QMVNSL+R+GLPP
Sbjct: 2185 DFYKSLRWTRKIMYEDGHTLPQLVHMWHLITRHPTLFYSYRVQFVPQMVNSLNRVGLPP 2243
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BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: A0A7S3XLU8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLU8_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 8.080e-22
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLPPRC 183
            D++K +KWTKK+MYEEGHALPQL HMW ++V    LFY  R+ F+  +VNSL+RLGLPP C
Sbjct:   30 DYVKVVKWTKKVMYEEGHALPQLAHMWRMLVAWAPLFYPYRALFVPLVVNSLNRLGLPPNC 90
[Close]
BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: A0A7S1B6U3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6U3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.470e-20
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLP 174
            DF+KAIKWTKK+MYEEGHAL QL H+W +I RHP +FY  RS F+  MVNSL+RLGLP
Sbjct:  956 DFIKAIKWTKKVMYEEGHALQQLTHIWLVIARHPHIFYDYRSQFMTHMVNSLNRLGLP 1013
[Close]
BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Match: A0A484DQK7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQK7_BRELC)

HSP 1 Score: 92.8 bits (229), Expect = 1.470e-20
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 DFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSLSRLGLPP 177
            +F+KAIKWTKKI YEEGHAL QL+H+W +I+RHPALFY  R  F+  MVNSL+RL +PP
Sbjct: 2366 EFIKAIKWTKKIAYEEGHALGQLVHIWFLIIRHPALFYPFRGQFVPLMVNSLNRLAIPP 2424
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61345.13687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAF7_9PHAE1.560e-3393.44FAT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFI6_ECTSI1.560e-3393.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2HDV8_9STRA1.510e-3081.97Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1U5K1_9STRA1.210e-2978.69Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YHH3_AURAN1.070e-2577.05Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2WWQ5_9STRA5.070e-2573.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9U8N6_9STRA2.890e-2369.49Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A7S3XLU8_HETAK8.080e-2262.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1B6U3_9STRA1.470e-2070.69Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A484DQK7_BRELC1.470e-2067.80Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61345contigH-elongata_contig61345:5..187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog2880.D8LFI6
KEGG koko:K08874
KEGG Pathwayko05166,map05166
GOsGO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0889@2759
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930990.2062073-CDS-H-elongata_contig61345:4..1811622930990.2062073-CDS-H-elongata_contig61345:4..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61345 5..181 -
1691679652.8912306-CDS-H-elongata_contig61345:4..1811691679652.8912306-CDS-H-elongata_contig61345:4..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61345 5..181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930990.2207634-UTR-H-elongata_contig61345:181..1871622930990.2207634-UTR-H-elongata_contig61345:181..187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61345 182..187 -
1691679652.9030628-UTR-H-elongata_contig61345:181..1871691679652.9030628-UTR-H-elongata_contig61345:181..187Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61345 182..187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61345.13687.1prot_H-elongata_contig61345.13687.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61345 5..181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61345.13687.1

>prot_H-elongata_contig61345.13687.1 ID=prot_H-elongata_contig61345.13687.1|Name=mRNA_H-elongata_contig61345.13687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFIGQMVNSL
SRLGLPPRC
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mRNA from alignment at H-elongata_contig61345:5..187-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61345.13687.1 ID=mRNA_H-elongata_contig61345.13687.1|Name=mRNA_H-elongata_contig61345.13687.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig61345:5..187- (Himanthalia elongata Himel1 dioecious)
GATTTCATGAAGGCAATCAAGTGGACGAAGAAGATCATGTACGAGGAAGG
CCACGCCCTCCCGCAGCTGATTCACATGTGGCACATCATCGTAAGACACC
CCGCCCTCTTCTACAGCTGCCGGAGCCACTTCATCGGCCAGATGGTGAAC
TCCCTCAGCCGCCTGGGACTACCGCCTAGGTGT
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Coding sequence (CDS) from alignment at H-elongata_contig61345:5..187-

>mRNA_H-elongata_contig61345.13687.1 ID=mRNA_H-elongata_contig61345.13687.1|Name=mRNA_H-elongata_contig61345.13687.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig61345:5..187- (Himanthalia elongata Himel1 dioecious)
ATGAAGGCAATCAAGTGGACGAAGAAGATCATGTACGAGGAAGGCCACGC
CCTCCCGCAGCTGATTCACATGTGGCACATCATCGTAAGACACCCCGCCC
TCTTCTACAGCTGCCGGAGCCACTTCATCGGCCAGATGGTGAACTCCCTC
AGCCGCCTGGGACTACCGCCTAGGTGTATGAAGGCAATCAAGTGGACGAA
GAAGATCATGTACGAGGAAGGCCACGCCCTCCCGCAGCTGATTCACATGT
GGCACATCATCGTAAGACACCCCGCCCTCTTCTACAGCTGCCGGAGCCAC
TTCATCGGCCAGATGGTGAACTCCCTCAGCCGCCTGGGACTACCGCCTAG
GTGT
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