mRNA_H-elongata_contig61332.13686.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61332.13686.1
Unique NamemRNA_H-elongata_contig61332.13686.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.420e-27
Identity = 62/168 (36.90%), Postives = 92/168 (54.76%), Query Frame = 1
Query:   19 SGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFFYR-QFMFSSPTRSLRITRSKHKICG---PEKQPPVRQDYCRYMGGVDVADQKAGTYLCPHRPRNYFWRRVFEHFVMQAVVNSFILFEKW 510
            SG+ +AMDN+F+  +++ CLAT  IFAVGT R N  GV     +W  + +K TE+  M   R   + I +W D ++V+    + +F      L   R      G   P  QP  R++Y + +GGVDVADQ+   +   HRP  +FW RV +    QAV N+++LF +W
Sbjct:   72 SGITVAMDNFFTGASVLRCLATRDIFAVGTRRGNRTGVDLVKHLWDKEGLKATERGDMLTARSDELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGDKVPSHQPLARKEYVKNIGGVDVADQRLSAHAHTHRPMTFFWGRVLDQKFAQAVSNAWLLFFEW 239          
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.280e-26
Identity = 70/176 (39.77%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   19 SGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFFYRQFMFSSPT---------RSLRITRSKHKICGPEK---QPPVRQDYCRYMGGVDVADQKAGTYLCPHRPRNYFWRRVFEHFVMQAVVNSFILFEKW 510
            SGV IAMDNYF+SPTL  CLA+H IFAVGT RS  P   GAL    S          M F R G M+  QW D K++                     + + +        G  K   QP +R DY +YMGGVD ADQ+  ++   HR     WRRVF+  +MQ + N+F+LF  W
Sbjct:  196 SGVFIAMDNYFTSPTLFACLASHEIFAVGTCRS--PRTCGALPYIQSLERTTPNPGDMTFCRSGEMAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKGWAGKHKEHDQPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTNNFLLFRMW 369          
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.800e-25
Identity = 69/181 (38.12%), Postives = 96/181 (53.04%), Query Frame = 1
Query:   19 SGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFFYRQFMFSSPTRSLRIT-------------RSKHKICGPE--KQPPVRQDYCRYMGGVDVADQKAGTYLCPHRPRNYFWRRVFEHFVMQAVVNSFILFEKWRE 516
            SGV IAMDNYF+SPTL  CLA+H IFAVGT R++     GA A   S    +  +  M F R G ++  QW D K +F       + P +                  R+K +   P   +QP +R DY   M GVD+ADQ+ G++   H+    FWRRV++  + QA+ N+F++F KW E
Sbjct:  488 SGVFIAMDNYFTSPTLFECLASHDIFAVGTCRAD--RTAGADAYLESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVE 666          
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.320e-21
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 1
Query:   19 SGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFFYR-QFMFSSPTRSLRITRSKHKICGPE---KQPPVRQDYCRYMGGVDVADQKAGTYLCPHRPRNYF 441
            SG+ +AMDN+F+  +L+ CLAT  IFAVGTLR N  GV  A  +W  + +K TE+  M   R   + I +W D ++V+    + +F      L   R      G +   +QP  R++Y + MGGVDVADQ+   +   HRP  +F
Sbjct:  113 SGITVAMDNFFTGASLVRCLATRDIFAVGTLRGNRTGVDLAKHLWDKEGLKATERGDMLTARSDELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGEKVSSQQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257          
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.390e-14
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   19 SGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFFYRQFMFSSP 282
            SGV+IAMDNYF+SPTL  CLA+H IFAVGT RSN    GGA+    S   +  E+  M F R GN++  QW D K++        + P
Sbjct:   61 SGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSN--RTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQP 146          
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.050e-13
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   19 SGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFFYRQFMFSSP 282
            SG +IAMDNYF SPTL  CLA+H IFAVGT RSN    GGA+    S   +  E+  M F R GN++  QW D K++        + P
Sbjct:  890 SGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSN--RTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQP 975          
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: A0A6H5JVE2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.550e-13
Identity = 50/132 (37.88%), Postives = 62/132 (46.97%), Query Frame = 1
Query:   19 SGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFFYRQFMFSSPT---------RSLRITRSKHKICGPEK---QPPVRQDYCRYMGG 378
            SGV IAM NYF+SPTL  CLA+H IFAV T RS  P   GAL    S    +  +  M F R G M+  QW D K++  Y                  + + +        G  K   QP +R DY +YMGG
Sbjct:  169 SGVFIAMANYFTSPTLFACLASHDIFAVATCRS--PRTCGALPYMESLGHTIPNRGDMTFCRSGEMAFVQWRDSKEILLYSTVHIGETGGEGGGINHFKPVLLALKGKGRAGKHKEHDQPVMRMDYVKYMGG 298          
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.380e-12
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   19 SGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFFYRQFMFSSP 282
            SGVHIAM N F+SPTL  CLA+H IFAVGT RSN    GGA+    S   +  E+  M F R GN++  QW D K++        + P
Sbjct:  836 SGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSN--RTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQP 921          
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: A0A6H5K5P5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.020e-11
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 SSQLRESGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKV 249
            S+++  SGV +AMDNYF+S  L+  LA+  IFAVGTLR    G+ GA+ +W +      EK  M F R  ++ I +W D K V
Sbjct:  448 SNKINNSGVTVAMDNYFTSAGLLLSLASRDIFAVGTLRGKRSGLDGAMELWQNNEESTKEKGDMIFARSNDIVIIEWVDSKTV 530          
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Match: UPI0018648574 (piggyBac transposable element-derived protein 4-like n=1 Tax=Colossoma macropomum TaxID=42526 RepID=UPI0018648574)

HSP 1 Score: 66.6 bits (161), Expect = 1.070e-9
Identity = 49/168 (29.17%), Postives = 84/168 (50.00%), Query Frame = 1
Query:   19 SGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAMWASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFF----YRQFMFSSPTRSLRITRSKHKICGPEKQPPVRQDYCRYMGGVDVADQKAGTYLCPHRPRNYFW-RRVFEHFVMQAVVNSFILFEK 507
            +G  +  DN+++SPTL   L    I A GT+R+N  G         S+    +E+ +M ++R G +   +W D K+V      ++ +     +R  R      K        P++  Y +YMGGVD++DQ+   Y    R + Y W +  F HF+  AVVN+++L+++
Sbjct:  338 TGYILYCDNFYTSPTLFRDLYEMKIGACGTVRANRSGYPRTQENCLSRS---SERGSMRWIRQGPLLFVKWMDTKEVSICSTIHKAYTGDVVSRRQRQPDGTWKAREFHLPAPIKA-YNKYMGGVDLSDQRLQNYTT--RRKTYSWYKSFFFHFMDMAVVNAYLLYKE 499          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61332.13686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGW0_9PHAE1.420e-2736.90DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KMF5_9PHAE2.280e-2639.77DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE1.800e-2538.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG44_9PHAE1.320e-2137.93DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KCK7_9PHAE6.390e-1447.73DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5JW40_9PHAE4.050e-1346.59HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JVE2_9PHAE7.550e-1337.88DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JJP9_9PHAE1.380e-1246.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5P5_9PHAE9.020e-1143.37DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
UPI00186485741.070e-929.17piggyBac transposable element-derived protein 4-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61332contigH-elongata_contig61332:31..799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.6
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog144197.XP_008282296.1
EggNOG free text desc.piggyBac transposable element derived 4
EggNOG OGs28PUT@1,2QWHD@2759,38EA4@33154,3BMU4@33208,3CZSB@33213,48F19@7711,49BW8@7742,4A8SE@7898
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930990.0971062-CDS-H-elongata_contig61332:30..2421622930990.0971062-CDS-H-elongata_contig61332:30..242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61332 31..242 -
1691679652.8706627-CDS-H-elongata_contig61332:30..2421691679652.8706627-CDS-H-elongata_contig61332:30..242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61332 31..242 -
1622930990.1200526-CDS-H-elongata_contig61332:495..7991622930990.1200526-CDS-H-elongata_contig61332:495..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61332 496..799 -
1691679652.881195-CDS-H-elongata_contig61332:495..7991691679652.881195-CDS-H-elongata_contig61332:495..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61332 496..799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61332.13686.1prot_H-elongata_contig61332.13686.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61332 31..799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61332.13686.1

>prot_H-elongata_contig61332.13686.1 ID=prot_H-elongata_contig61332.13686.1|Name=mRNA_H-elongata_contig61332.13686.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
SSQLRESGVHIAMDNYFSSPTLMGCLATHLIFAVGTLRSNIPGVGGALAM
WASKHVKLTEKDAMAFLRWGNMSITQWFDKKKVFFYRQFMFSSPTRSLRI
TRSKHKICGPEKQPPVRQDYCRYMGGVDVADQKAGTYLCPHRPRNYFWRR
VFEHFVMQAVVNSFILFEKWRE
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mRNA from alignment at H-elongata_contig61332:31..799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61332.13686.1 ID=mRNA_H-elongata_contig61332.13686.1|Name=mRNA_H-elongata_contig61332.13686.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=769bp|location=Sequence derived from alignment at H-elongata_contig61332:31..799- (Himanthalia elongata Himel1 dioecious)
TCTTCACAGTTGAGAGAAAGTGGGGTCCATATTGCGATGGATAACTATTT CTCATCACCAACACTCATGGGGTGTCTTGCAACTCATCTCATTTTTGCTG TCGGTACACTGAGAAGTAATATACCAGGTGTCGGCGGCGCTCTCGCGATG TGGGCTTCGAAACACGTGAAGCTTACAGAGAAAGATGCTATGGCGTTTTT GCGCTGGGGCAACATGTCCATAACACAATGGTTCGACAAGAAGAAAGTTT TTTTCTATCGACAGTTCATGTTTTCAAGCCCGACACGGAGCCTCAGGATT ACCCGTGAGTACCACCCGCTTTAGATCTTTTTTGTATGACTGCTCCTAGC AGGTCTAGTATTACTTGGGAGCCATAAGCAAAATAAAACATGTAGTTCCC TATCAGACGATATTTCGTCTGATGAGGTCATGTAATTGTTGTTGACATGA GTTAACACCTGGAAACGACTTATGCCCGTTTCATTGAGAAATACTTCGTC CGTTCCACTATCCCCCCCCTACGCTATAACTGCTGCTTGACAGGAGGAAA CGGAAAGGGAGTAAACACAAGATATGCGGACCAGAAAAGCAACCTCCCGT TCGGCAAGACTATTGTCGGTACATGGGTGGAGTAGACGTCGCCGATCAGA AGGCGGGGACGTATCTTTGTCCCCACCGCCCCAGGAACTACTTTTGGAGG CGTGTTTTCGAACACTTCGTCATGCAGGCGGTCGTAAATAGTTTCATATT GTTTGAAAAATGGAGGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig61332:31..799-

>mRNA_H-elongata_contig61332.13686.1 ID=mRNA_H-elongata_contig61332.13686.1|Name=mRNA_H-elongata_contig61332.13686.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig61332:31..799- (Himanthalia elongata Himel1 dioecious)
TCTTCACAGTTGAGAGAAAGTGGGGTCCATATTGCGATGGATAACTATTT
CTCATCACCAACACTCATGGGGTGTCTTGCAACTCATCTCATTTTTGCTG
TCGGTACACTGAGAAGTAATATACCAGGTGTCGGCGGCGCTCTCGCGATG
TGGGCTTCGAAACACGTGAAGCTTACAGAGAAAGATGCTATGGCGTTTTT
GCGCTGGGGCAACATGTCCATAACACAATGGTTCGACAAGAAGAAAGTTT
TTTTCTATCGACAGTTCATGTTTTCAAGCCCGACACGGAGCCTCAGGATT
ACCCTCTTCACAGTTGAGAGAAAGTGGGGTCCATATTGCGATGGATAACT
ATTTCTCATCACCAACACTCATGGGGTGTCTTGCAACTCATCTCATTTTT
GCTGTCGGTACACTGAGAAGTAATATACCAGGTGTCGGCGGCGCTCTCGC
GATGTGGGCTTCGAAACACGTGAAGCTTACAGAGAAAGATGCTATGGCGT
TTTTGCGCTGGGGCAACATGTCCATAACACAATGGTTCGACAAGAAGAAA
GTTTTTTTCTATCGACAGTTCATGTTTTCAAGCCCGACACGGAGCCTCAG
GATTACCCGGAGTAAACACAAGATATGCGGACCAGAAAAGCAACCTCCCG
TTCGGCAAGACTATTGTCGGTACATGGGTGGAGTAGACGTCGCCGATCAG
AAGGCGGGGACGTATCTTTGTCCCCACCGCCCCAGGAACTACTTTTGGAG
GCGTGTTTTCGAACACTTCGTCATGCAGGCGGTCGTAAATAGTTTCATAT
TGTTTGAAAAATGGAGGGAAGGAGTAAACACAAGATATGCGGACCAGAAA
AGCAACCTCCCGTTCGGCAAGACTATTGTCGGTACATGGGTGGAGTAGAC
GTCGCCGATCAGAAGGCGGGGACGTATCTTTGTCCCCACCGCCCCAGGAA
CTACTTTTGGAGGCGTGTTTTCGAACACTTCGTCATGCAGGCGGTCGTAA
ATAGTTTCATATTGTTTGAAAAATGGAGGGAA
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