prot_H-elongata_contig61306.13681.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61306.13681.1
Unique Nameprot_H-elongata_contig61306.13681.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length312
Homology
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 1.990e-93
Identity = 141/217 (64.98%), Postives = 169/217 (77.88%), Query Frame = 0
Query:   92 SNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 308
            SNS PVQRQ Q+ A MPI+++NPY NRW IKARIT+K  +R+W+N RG GTLFS+DLLD DGSEIKGTFFK +AD+W++ LQEG VY  +GGK+KVANKKFSS  +EYE+ FD  T I  + DDSRI S TY FVKLN MEA E N ++DVI +VKS ED  +F   +GK+ +KRNL LVDDTCTEI +TLWG +AK D  RW+ NPVVAFKGVK S
Sbjct:  211 SNSGPVQRQSQDSAYMPISAINPYQNRWTIKARITKKGDMRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANKKFSSFNAEYELNFDSSTQINPINDDSRISSATYAFVKLNEMEAMEANKVLDVIAVVKSVEDHAQFVSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKLS 427          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: D7FUU1_ECTSI (Replication protein A subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU1_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 3.670e-75
Identity = 116/178 (65.17%), Postives = 139/178 (78.09%), Query Frame = 0
Query:  131 IRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 308
            +R+W+N RG GTLFS+DLLD DGSEIKGTFFK +AD+W++ LQEG VY  +GGK+KVANKKFSS  +EYE+TFD  T I  + DDSRI S TY FVKLN MEA E N ++DVI +VKS ED  +F   +GK+ +KRNL LVDDTCTEI +TLWG +AK D  RW+ NPVVAFKGVK S
Sbjct:    1 MRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANKKFSSFNAEYELTFDSSTQINPINDDSRIGSATYAFVKLNEMEALEANKVLDVIAVVKSVEDHAQFVSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKLS 178          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A6U0TYW6_9STRA (Replication protein A subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TYW6_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.660e-67
Identity = 114/218 (52.29%), Postives = 151/218 (69.27%), Query Frame = 0
Query:   93 NSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 308
            NSAPV R + +D  MPIA+LN Y+++W IKAR+T KSAIR+WSN RGEG LF++DLLD  G EI+ TFFK   DR+   LQEG VY  SGG++K+A K+++S+K++YEITFD+   I   +D+  I  + YNF K+  +E   P   +D++ +VKS  +C     Q LS KE  KR+L LVDD+ TEI MTLWG  A+ED  +W  NPV+A KGVK S
Sbjct:  194 NSAPVARVESDDRIMPIAALNLYNSKWTIKARVTSKSAIRRWSNARGEGHLFNVDLLDGQGGEIRATFFKDACDRFEPLLQEGRVYTFSGGRLKLAKKEYTSIKNDYEITFDRNADIRPSDDEGGIKRIKYNFTKIGDIEKVAPGATIDLVAVVKSCGECNSIMSQKLS-KELFKRDLVLVDDSNTEIQMTLWGDRAREDGGQWMSNPVIAVKGVKVS 410          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: W7T7F5_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7F5_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.370e-64
Identity = 106/216 (49.07%), Postives = 144/216 (66.67%), Query Frame = 0
Query:   94 SAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLS-GKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 308
            S PV R     + +PI  LNPY NRWVIKAR+T K+ I++WSN +GEGTLFS+DLLD    EI+ TFFK   +++Y  L++G VY  SGGK+K A +++SS+++ YE TFD  + I  V DD +I S  Y+F K+  +E T PN  +DVIG+VK+F           G+E EKR LTL DDT TE+ +T+WG  A +   +W+ +P+VAFKGVK S
Sbjct:  231 SGPVVRAGPPQSIIPINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQSAVYSFKKIGELEETPPNATIDVIGVVKAFSPLSTITTKKDGREVEKRELTLCDDTGTEVRLTVWGERASKQPEQWENHPIVAFKGVKVS 446          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A4D9CR27_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR27_9STRA)

HSP 1 Score: 224 bits (570), Expect = 6.130e-63
Identity = 106/216 (49.07%), Postives = 144/216 (66.67%), Query Frame = 0
Query:   94 SAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLS-GKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 308
            S PV R     + +PI  LNPY NRWVIKAR+T K+ I++WSN +GEGTLFS+DLLD    EI+ TFFK   +++Y  L++G VY  SGGK+K A +++SS+++ YE TFD  + I  V DD +I S  Y+F K+  +E T PN  +DVIG+VK+F           G+E EKR LTL DDT TE+ +T+WG  A +   +W+ +P+VAFKGVK S
Sbjct:  159 SGPVVRAGPPQSIIPINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQSAVYSFKKIGELEETPPNATIDVIGVVKAFSPLSTITTKKDGREVEKRELTLCDDTGTEVRLTVWGERASKQPEQWENHPIVAFKGVKVS 374          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A7S2V6G1_9STRA (Replication protein A subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6G1_9STRA)

HSP 1 Score: 205 bits (521), Expect = 3.070e-59
Identity = 96/204 (47.06%), Postives = 141/204 (69.12%), Query Frame = 0
Query:  108 PIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNP-VVAFKGVKAS 308
            PI+SLNPY NRWVIKAR+T K+ I+ WSN RGEG L SI+LLD  G+EI+GTFFK + D WY  +++G VY ISGG+IK+ANK++S++K++YEITFD  T I++++DDS I  +  + VK+  + +  P   +D++ +VK+  +      Q   G++ +KR+L LVDD+  E+ +T+W  +AK D   W  NP +V  K V+ S
Sbjct:    5 PISSLNPYQNRWVIKARVTNKTPIKTWSNVRGEGKLASIELLDDQGTEIRGTFFKQQVDDWYNRIEQGKVYSISGGRIKIANKQYSNVKNDYEITFDNSTDIQQLDDDSSIEGLKLSIVKIQELSSLAPGANVDILAVVKNVGEMAEIVSQKQGGRQLQKRDLILVDDSGAEVKLTVWNEMAK-DGSMWVGNPTLVGAKNVRVS 207          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA)

HSP 1 Score: 209 bits (531), Expect = 6.390e-59
Identity = 101/212 (47.64%), Postives = 139/212 (65.57%), Query Frame = 0
Query:   90 TGSNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVA 301
            +G  S PVQR     +  PI+ LNPY NRW IKAR+T KS IR+WSN RGEG L S+DLLD  G E++GTFFK   D++   L+   VY  SGG+IKVANK++SSL+++YEITF+  + IE+V DD RI +M   F ++  ++  E N  +D++ +V+ F+D       + +E EKRN+TLVDD+  E+  TLWG+ AK  D     +PV A
Sbjct:  189 SGGASGPVQRHDSGASYTPISDLNPYMNRWTIKARVTAKSEIRRWSNQRGEGYLASVDLLDEFGGEVRGTFFKDAVDKYLPMLEVNSVYTFSGGRIKVANKQYSSLQNDYEITFNSDSVIEKVADDKRIKAMNLTFRRIADLKDVEVNATIDILAVVRDFQDMAMIMTKNNREVEKRNITLVDDSGAEVVCTLWGAHAKLPDDALRGSPVAA 400          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A812QY53_SYMMI (RPA1C protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QY53_SYMMI)

HSP 1 Score: 195 bits (495), Expect = 2.420e-58
Identity = 90/192 (46.88%), Postives = 130/192 (67.71%), Query Frame = 0
Query:  119 WVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 308
            W IKAR+T KS IR+WSN RGEGTLFSIDLLD+ G EI+ TFFK   ++W+  L+E  VY  SGG++KV ++K+S++++EYE+TFD  + I+   DD+ I +M YNF+K++ +   E N  +D++ IV+S  +C     Q + GK   KR L L DD+  ++ +TLWG  A+ D   W+  P+VAFKG+  S
Sbjct:    1 WKIKARVTSKSDIRRWSNARGEGTLFSIDLLDSAGGEIRATFFKDACEKWFPQLEEQKVYTFSGGRLKVGDRKYSTMRNEYELTFDANSEIQHCADDNDIKTMNYNFMKISDLPQVEANATVDLLAIVRSAGECSELISQKMGGKTLHKRELVLYDDSGFDVRLTLWGDRAQADT-PWNDGPIVAFKGLGVS 191          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK)

HSP 1 Score: 204 bits (519), Expect = 3.110e-57
Identity = 103/219 (47.03%), Postives = 148/219 (67.58%), Query Frame = 0
Query:   92 SNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 308
            +++ PV R+       PIASLNPY NRW IKAR+T++S IR+WSN RGEG L S+DLLD +G+EI+ T FK + DR YE LQEG V+  SGG++KVANK+++S+K++YEITF   T +E   D++ I    ++FV + A+       M+D+I +VKS  +      +   GKE +KR+LTLVD +  E+ +T+WG  A     +W+ +PVVAFKG++AS
Sbjct:  189 TSTGPVARENPNAQYQPIASLNPYQNRWTIKARVTKRSDIRRWSNARGEGHLASVDLLDAEGTEIRATMFKEDCDRLYERLQEGKVFSFSGGRLKVANKQYTSIKNDYEITFGSETVVEGPLDEAGIEQNKFSFVDIAALSPDAG--MVDLIAVVKSAGELSTIISKKQGGKELQKRDLTLVDRSGAEVRLTVWGESALAQA-QWEHSPVVAFKGLRAS 404          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A7S2D1P3_9STRA (Replication protein A subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1P3_9STRA)

HSP 1 Score: 202 bits (515), Expect = 4.880e-57
Identity = 106/220 (48.18%), Postives = 139/220 (63.18%), Query Frame = 0
Query:   90 TGSNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEA-TEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 308
            T S S P+ R      C PIA LNPY NRW IKA +  K   ++WSN RG G LF IDL D DGSEI   FFK    ++Y+ L+ G +Y  S GKIK+ANKKF +   +YEI FD  + I  V+D SRI  M+YNF KL+++E     NV +DV+ +VKS+ +C       G+ET+KR+L LVDDT  E+++TLWGS A   +  W+  PVVAFK ++ S
Sbjct:  128 TPSASGPIVRASPGVKCTPIAGLNPYQNRWTIKAAVMSKGEKKEWSNDRGSGCLFKIDLQDDDGSEISAAFFKDAVTKFYDMLEVGNIYTFSRGKIKMANKKFRNNNCDYEINFDTMSEICLVDDGSRIQ-MSYNFTKLDSLEQYAGTNVPVDVLAVVKSYTECLSLTTKKGRETQKRDLKLVDDTNLEVSVTLWGSHADNAEL-WEGCPVVAFKKLRVS 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE1.990e-9364.98Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU1_ECTSI3.670e-7565.17Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
A0A6U0TYW6_9STRA1.660e-6752.29Replication protein A subunit n=1 Tax=Pinguiococcu... [more]
W7T7F5_9STRA2.370e-6449.07Replication protein A subunit n=1 Tax=Nannochlorop... [more]
A0A4D9CR27_9STRA6.130e-6349.07Replication protein A subunit n=1 Tax=Nannochlorop... [more]
A0A7S2V6G1_9STRA3.070e-5947.06Replication protein A subunit n=1 Tax=Fibrocapsa j... [more]
A0A835Z8X4_9STRA6.390e-5947.64Replication protein A subunit n=1 Tax=Tribonema mi... [more]
A0A812QY53_SYMMI2.420e-5846.88RPA1C protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S3XQ94_HETAK3.110e-5747.03Replication protein A subunit n=1 Tax=Heterosigma ... [more]
A0A7S2D1P3_9STRA4.880e-5748.18Replication protein A subunit n=1 Tax=Dictyocha sp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-typePFAMPF01336tRNA_anti-codoncoord: 119..204
e-value: 2.3E-11
score: 43.5
NoneNo IPR availableGENE3D2.40.50.140coord: 105..215
e-value: 7.1E-38
score: 131.0
NoneNo IPR availableGENE3D2.40.50.140coord: 217..311
e-value: 3.8E-20
score: 73.8
NoneNo IPR availablePANTHERPTHR23273REPLICATION FACTOR A 1, RFA1coord: 83..307
NoneNo IPR availablePANTHERPTHR23273:SF4REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNITcoord: 83..307
IPR031657Replication protein A, OB domainPFAMPF16900REPA_OB_2coord: 229..308
e-value: 2.5E-19
score: 69.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 107..217
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 223..308

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61306contigH-elongata_contig61306:205..3035 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61306.13681.1mRNA_H-elongata_contig61306.13681.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61306 205..3035 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61306.13681.1 ID=prot_H-elongata_contig61306.13681.1|Name=mRNA_H-elongata_contig61306.13681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=312bp
ISLLPNLPPSLGGGGGGNYGGRGNYGGSGGRGNYGRGGGGDNYGGRGGGN
YGGGGNYGGGGGGGNYGGGGGGGGGYRGSSAGNPYSNRSTGSNSAPVQRQ
QQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLD
TDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYE
ITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFE
DCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVV
AFKGVKASMRY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004365NA-bd_OB_tRNA
IPR031657REPA_OB_2
IPR012340NA-bd_OB-fold