mRNA_H-elongata_contig61306.13681.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE) HSP 1 Score: 300 bits (767), Expect = 1.990e-93 Identity = 141/217 (64.98%), Postives = 169/217 (77.88%), Query Frame = 1
Query: 274 SNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
SNS PVQRQ Q+ A MPI+++NPY NRW IKARIT+K +R+W+N RG GTLFS+DLLD DGSEIKGTFFK +AD+W++ LQEG VY +GGK+KVANKKFSS +EYE+ FD T I + DDSRI S TY FVKLN MEA E N ++DVI +VKS ED +F +GK+ +KRNL LVDDTCTEI +TLWG +AK D RW+ NPVVAFKGVK S
Sbjct: 211 SNSGPVQRQSQDSAYMPISAINPYQNRWTIKARITKKGDMRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANKKFSSFNAEYELNFDSSTQINPINDDSRISSATYAFVKLNEMEAMEANKVLDVIAVVKSVEDHAQFVSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKLS 427
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: D7FUU1_ECTSI (Replication protein A subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU1_ECTSI) HSP 1 Score: 245 bits (626), Expect = 3.670e-75 Identity = 116/178 (65.17%), Postives = 139/178 (78.09%), Query Frame = 1
Query: 391 IRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
+R+W+N RG GTLFS+DLLD DGSEIKGTFFK +AD+W++ LQEG VY +GGK+KVANKKFSS +EYE+TFD T I + DDSRI S TY FVKLN MEA E N ++DVI +VKS ED +F +GK+ +KRNL LVDDTCTEI +TLWG +AK D RW+ NPVVAFKGVK S
Sbjct: 1 MRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANKKFSSFNAEYELTFDSSTQINPINDDSRIGSATYAFVKLNEMEALEANKVLDVIAVVKSVEDHAQFVSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKLS 178
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A6U0TYW6_9STRA (Replication protein A subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TYW6_9STRA) HSP 1 Score: 231 bits (590), Expect = 1.660e-67 Identity = 114/218 (52.29%), Postives = 151/218 (69.27%), Query Frame = 1
Query: 277 NSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
NSAPV R + +D MPIA+LN Y+++W IKAR+T KSAIR+WSN RGEG LF++DLLD G EI+ TFFK DR+ LQEG VY SGG++K+A K+++S+K++YEITFD+ I +D+ I + YNF K+ +E P +D++ +VKS +C Q LS KE KR+L LVDD+ TEI MTLWG A+ED +W NPV+A KGVK S
Sbjct: 194 NSAPVARVESDDRIMPIAALNLYNSKWTIKARVTSKSAIRRWSNARGEGHLFNVDLLDGQGGEIRATFFKDACDRFEPLLQEGRVYTFSGGRLKLAKKEYTSIKNDYEITFDRNADIRPSDDEGGIKRIKYNFTKIGDIEKVAPGATIDLVAVVKSCGECNSIMSQKLS-KELFKRDLVLVDDSNTEIQMTLWGDRAREDGGQWMSNPVIAVKGVKVS 410
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: W7T7F5_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7F5_9STRA) HSP 1 Score: 224 bits (570), Expect = 2.370e-64 Identity = 106/216 (49.07%), Postives = 144/216 (66.67%), Query Frame = 1
Query: 280 SAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLS-GKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
S PV R + +PI LNPY NRWVIKAR+T K+ I++WSN +GEGTLFS+DLLD EI+ TFFK +++Y L++G VY SGGK+K A +++SS+++ YE TFD + I V DD +I S Y+F K+ +E T PN +DVIG+VK+F G+E EKR LTL DDT TE+ +T+WG A + +W+ +P+VAFKGVK S
Sbjct: 231 SGPVVRAGPPQSIIPINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQSAVYSFKKIGELEETPPNATIDVIGVVKAFSPLSTITTKKDGREVEKRELTLCDDTGTEVRLTVWGERASKQPEQWENHPIVAFKGVKVS 446
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A4D9CR27_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR27_9STRA) HSP 1 Score: 224 bits (570), Expect = 6.130e-63 Identity = 106/216 (49.07%), Postives = 144/216 (66.67%), Query Frame = 1
Query: 280 SAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLS-GKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
S PV R + +PI LNPY NRWVIKAR+T K+ I++WSN +GEGTLFS+DLLD EI+ TFFK +++Y L++G VY SGGK+K A +++SS+++ YE TFD + I V DD +I S Y+F K+ +E T PN +DVIG+VK+F G+E EKR LTL DDT TE+ +T+WG A + +W+ +P+VAFKGVK S
Sbjct: 159 SGPVVRAGPPQSIIPINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQSAVYSFKKIGELEETPPNATIDVIGVVKAFSPLSTITTKKDGREVEKRELTLCDDTGTEVRLTVWGERASKQPEQWENHPIVAFKGVKVS 374
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A7S2V6G1_9STRA (Replication protein A subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6G1_9STRA) HSP 1 Score: 205 bits (521), Expect = 3.070e-59 Identity = 96/204 (47.06%), Postives = 141/204 (69.12%), Query Frame = 1
Query: 322 PIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNP-VVAFKGVKAS 924
PI+SLNPY NRWVIKAR+T K+ I+ WSN RGEG L SI+LLD G+EI+GTFFK + D WY +++G VY ISGG+IK+ANK++S++K++YEITFD T I++++DDS I + + VK+ + + P +D++ +VK+ + Q G++ +KR+L LVDD+ E+ +T+W +AK D W NP +V K V+ S
Sbjct: 5 PISSLNPYQNRWVIKARVTNKTPIKTWSNVRGEGKLASIELLDDQGTEIRGTFFKQQVDDWYNRIEQGKVYSISGGRIKIANKQYSNVKNDYEITFDNSTDIQQLDDDSSIEGLKLSIVKIQELSSLAPGANVDILAVVKNVGEMAEIVSQKQGGRQLQKRDLILVDDSGAEVKLTVWNEMAK-DGSMWVGNPTLVGAKNVRVS 207
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA) HSP 1 Score: 209 bits (531), Expect = 6.390e-59 Identity = 101/212 (47.64%), Postives = 139/212 (65.57%), Query Frame = 1
Query: 268 TGSNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVA 903
+G S PVQR + PI+ LNPY NRW IKAR+T KS IR+WSN RGEG L S+DLLD G E++GTFFK D++ L+ VY SGG+IKVANK++SSL+++YEITF+ + IE+V DD RI +M F ++ ++ E N +D++ +V+ F+D + +E EKRN+TLVDD+ E+ TLWG+ AK D +PV A
Sbjct: 189 SGGASGPVQRHDSGASYTPISDLNPYMNRWTIKARVTAKSEIRRWSNQRGEGYLASVDLLDEFGGEVRGTFFKDAVDKYLPMLEVNSVYTFSGGRIKVANKQYSSLQNDYEITFNSDSVIEKVADDKRIKAMNLTFRRIADLKDVEVNATIDILAVVRDFQDMAMIMTKNNREVEKRNITLVDDSGAEVVCTLWGAHAKLPDDALRGSPVAA 400
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A812QY53_SYMMI (RPA1C protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QY53_SYMMI) HSP 1 Score: 195 bits (495), Expect = 2.420e-58 Identity = 90/192 (46.88%), Postives = 130/192 (67.71%), Query Frame = 1
Query: 355 WVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
W IKAR+T KS IR+WSN RGEGTLFSIDLLD+ G EI+ TFFK ++W+ L+E VY SGG++KV ++K+S++++EYE+TFD + I+ DD+ I +M YNF+K++ + E N +D++ IV+S +C Q + GK KR L L DD+ ++ +TLWG A+ D W+ P+VAFKG+ S
Sbjct: 1 WKIKARVTSKSDIRRWSNARGEGTLFSIDLLDSAGGEIRATFFKDACEKWFPQLEEQKVYTFSGGRLKVGDRKYSTMRNEYELTFDANSEIQHCADDNDIKTMNYNFMKISDLPQVEANATVDLLAIVRSAGECSELISQKMGGKTLHKRELVLYDDSGFDVRLTLWGDRAQADT-PWNDGPIVAFKGLGVS 191
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK) HSP 1 Score: 204 bits (519), Expect = 3.110e-57 Identity = 103/219 (47.03%), Postives = 148/219 (67.58%), Query Frame = 1
Query: 274 SNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
+++ PV R+ PIASLNPY NRW IKAR+T++S IR+WSN RGEG L S+DLLD +G+EI+ T FK + DR YE LQEG V+ SGG++KVANK+++S+K++YEITF T +E D++ I ++FV + A+ M+D+I +VKS + + GKE +KR+LTLVD + E+ +T+WG A +W+ +PVVAFKG++AS
Sbjct: 189 TSTGPVARENPNAQYQPIASLNPYQNRWTIKARVTKRSDIRRWSNARGEGHLASVDLLDAEGTEIRATMFKEDCDRLYERLQEGKVFSFSGGRLKVANKQYTSIKNDYEITFGSETVVEGPLDEAGIEQNKFSFVDIAALSPDAG--MVDLIAVVKSAGELSTIISKKQGGKELQKRDLTLVDRSGAEVRLTVWGESALAQA-QWEHSPVVAFKGLRAS 404
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A7S2D1P3_9STRA (Replication protein A subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1P3_9STRA) HSP 1 Score: 202 bits (515), Expect = 4.880e-57 Identity = 106/220 (48.18%), Postives = 139/220 (63.18%), Query Frame = 1
Query: 268 TGSNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEA-TEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
T S S P+ R C PIA LNPY NRW IKA + K ++WSN RG G LF IDL D DGSEI FFK ++Y+ L+ G +Y S GKIK+ANKKF + +YEI FD + I V+D SRI M+YNF KL+++E NV +DV+ +VKS+ +C G+ET+KR+L LVDDT E+++TLWGS A + W+ PVVAFK ++ S
Sbjct: 128 TPSASGPIVRASPGVKCTPIAGLNPYQNRWTIKAAVMSKGEKKEWSNDRGSGCLFKIDLQDDDGSEISAAFFKDAVTKFYDMLEVGNIYTFSRGKIKMANKKFRNNNCDYEINFDTMSEICLVDDGSRIQ-MSYNFTKLDSLEQYAGTNVPVDVLAVVKSYTECLSLTTKKGRETQKRDLKLVDDTNLEVSVTLWGSHADNAEL-WEGCPVVAFKKLRVS 345 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61306.13681.1 >prot_H-elongata_contig61306.13681.1 ID=prot_H-elongata_contig61306.13681.1|Name=mRNA_H-elongata_contig61306.13681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=312bp ISLLPNLPPSLGGGGGGNYGGRGNYGGSGGRGNYGRGGGGDNYGGRGGGNback to top mRNA from alignment at H-elongata_contig61306:205..3035- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61306.13681.1 ID=mRNA_H-elongata_contig61306.13681.1|Name=mRNA_H-elongata_contig61306.13681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2831bp|location=Sequence derived from alignment at H-elongata_contig61306:205..3035- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61306:205..3035- >mRNA_H-elongata_contig61306.13681.1 ID=mRNA_H-elongata_contig61306.13681.1|Name=mRNA_H-elongata_contig61306.13681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1872bp|location=Sequence derived from alignment at H-elongata_contig61306:205..3035- (Himanthalia elongata Himel1 dioecious)back to top |