mRNA_H-elongata_contig61306.13681.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61306.13681.1
Unique NamemRNA_H-elongata_contig61306.13681.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 1.990e-93
Identity = 141/217 (64.98%), Postives = 169/217 (77.88%), Query Frame = 1
Query:  274 SNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
            SNS PVQRQ Q+ A MPI+++NPY NRW IKARIT+K  +R+W+N RG GTLFS+DLLD DGSEIKGTFFK +AD+W++ LQEG VY  +GGK+KVANKKFSS  +EYE+ FD  T I  + DDSRI S TY FVKLN MEA E N ++DVI +VKS ED  +F   +GK+ +KRNL LVDDTCTEI +TLWG +AK D  RW+ NPVVAFKGVK S
Sbjct:  211 SNSGPVQRQSQDSAYMPISAINPYQNRWTIKARITKKGDMRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANKKFSSFNAEYELNFDSSTQINPINDDSRISSATYAFVKLNEMEAMEANKVLDVIAVVKSVEDHAQFVSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKLS 427          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: D7FUU1_ECTSI (Replication protein A subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU1_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 3.670e-75
Identity = 116/178 (65.17%), Postives = 139/178 (78.09%), Query Frame = 1
Query:  391 IRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
            +R+W+N RG GTLFS+DLLD DGSEIKGTFFK +AD+W++ LQEG VY  +GGK+KVANKKFSS  +EYE+TFD  T I  + DDSRI S TY FVKLN MEA E N ++DVI +VKS ED  +F   +GK+ +KRNL LVDDTCTEI +TLWG +AK D  RW+ NPVVAFKGVK S
Sbjct:    1 MRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANKKFSSFNAEYELTFDSSTQINPINDDSRIGSATYAFVKLNEMEALEANKVLDVIAVVKSVEDHAQFVSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKLS 178          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A6U0TYW6_9STRA (Replication protein A subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TYW6_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.660e-67
Identity = 114/218 (52.29%), Postives = 151/218 (69.27%), Query Frame = 1
Query:  277 NSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
            NSAPV R + +D  MPIA+LN Y+++W IKAR+T KSAIR+WSN RGEG LF++DLLD  G EI+ TFFK   DR+   LQEG VY  SGG++K+A K+++S+K++YEITFD+   I   +D+  I  + YNF K+  +E   P   +D++ +VKS  +C     Q LS KE  KR+L LVDD+ TEI MTLWG  A+ED  +W  NPV+A KGVK S
Sbjct:  194 NSAPVARVESDDRIMPIAALNLYNSKWTIKARVTSKSAIRRWSNARGEGHLFNVDLLDGQGGEIRATFFKDACDRFEPLLQEGRVYTFSGGRLKLAKKEYTSIKNDYEITFDRNADIRPSDDEGGIKRIKYNFTKIGDIEKVAPGATIDLVAVVKSCGECNSIMSQKLS-KELFKRDLVLVDDSNTEIQMTLWGDRAREDGGQWMSNPVIAVKGVKVS 410          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: W7T7F5_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7F5_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.370e-64
Identity = 106/216 (49.07%), Postives = 144/216 (66.67%), Query Frame = 1
Query:  280 SAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLS-GKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
            S PV R     + +PI  LNPY NRWVIKAR+T K+ I++WSN +GEGTLFS+DLLD    EI+ TFFK   +++Y  L++G VY  SGGK+K A +++SS+++ YE TFD  + I  V DD +I S  Y+F K+  +E T PN  +DVIG+VK+F           G+E EKR LTL DDT TE+ +T+WG  A +   +W+ +P+VAFKGVK S
Sbjct:  231 SGPVVRAGPPQSIIPINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQSAVYSFKKIGELEETPPNATIDVIGVVKAFSPLSTITTKKDGREVEKRELTLCDDTGTEVRLTVWGERASKQPEQWENHPIVAFKGVKVS 446          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A4D9CR27_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR27_9STRA)

HSP 1 Score: 224 bits (570), Expect = 6.130e-63
Identity = 106/216 (49.07%), Postives = 144/216 (66.67%), Query Frame = 1
Query:  280 SAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLS-GKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
            S PV R     + +PI  LNPY NRWVIKAR+T K+ I++WSN +GEGTLFS+DLLD    EI+ TFFK   +++Y  L++G VY  SGGK+K A +++SS+++ YE TFD  + I  V DD +I S  Y+F K+  +E T PN  +DVIG+VK+F           G+E EKR LTL DDT TE+ +T+WG  A +   +W+ +P+VAFKGVK S
Sbjct:  159 SGPVVRAGPPQSIIPINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQSAVYSFKKIGELEETPPNATIDVIGVVKAFSPLSTITTKKDGREVEKRELTLCDDTGTEVRLTVWGERASKQPEQWENHPIVAFKGVKVS 374          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A7S2V6G1_9STRA (Replication protein A subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6G1_9STRA)

HSP 1 Score: 205 bits (521), Expect = 3.070e-59
Identity = 96/204 (47.06%), Postives = 141/204 (69.12%), Query Frame = 1
Query:  322 PIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNP-VVAFKGVKAS 924
            PI+SLNPY NRWVIKAR+T K+ I+ WSN RGEG L SI+LLD  G+EI+GTFFK + D WY  +++G VY ISGG+IK+ANK++S++K++YEITFD  T I++++DDS I  +  + VK+  + +  P   +D++ +VK+  +      Q   G++ +KR+L LVDD+  E+ +T+W  +AK D   W  NP +V  K V+ S
Sbjct:    5 PISSLNPYQNRWVIKARVTNKTPIKTWSNVRGEGKLASIELLDDQGTEIRGTFFKQQVDDWYNRIEQGKVYSISGGRIKIANKQYSNVKNDYEITFDNSTDIQQLDDDSSIEGLKLSIVKIQELSSLAPGANVDILAVVKNVGEMAEIVSQKQGGRQLQKRDLILVDDSGAEVKLTVWNEMAK-DGSMWVGNPTLVGAKNVRVS 207          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA)

HSP 1 Score: 209 bits (531), Expect = 6.390e-59
Identity = 101/212 (47.64%), Postives = 139/212 (65.57%), Query Frame = 1
Query:  268 TGSNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVA 903
            +G  S PVQR     +  PI+ LNPY NRW IKAR+T KS IR+WSN RGEG L S+DLLD  G E++GTFFK   D++   L+   VY  SGG+IKVANK++SSL+++YEITF+  + IE+V DD RI +M   F ++  ++  E N  +D++ +V+ F+D       + +E EKRN+TLVDD+  E+  TLWG+ AK  D     +PV A
Sbjct:  189 SGGASGPVQRHDSGASYTPISDLNPYMNRWTIKARVTAKSEIRRWSNQRGEGYLASVDLLDEFGGEVRGTFFKDAVDKYLPMLEVNSVYTFSGGRIKVANKQYSSLQNDYEITFNSDSVIEKVADDKRIKAMNLTFRRIADLKDVEVNATIDILAVVRDFQDMAMIMTKNNREVEKRNITLVDDSGAEVVCTLWGAHAKLPDDALRGSPVAA 400          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A812QY53_SYMMI (RPA1C protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QY53_SYMMI)

HSP 1 Score: 195 bits (495), Expect = 2.420e-58
Identity = 90/192 (46.88%), Postives = 130/192 (67.71%), Query Frame = 1
Query:  355 WVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
            W IKAR+T KS IR+WSN RGEGTLFSIDLLD+ G EI+ TFFK   ++W+  L+E  VY  SGG++KV ++K+S++++EYE+TFD  + I+   DD+ I +M YNF+K++ +   E N  +D++ IV+S  +C     Q + GK   KR L L DD+  ++ +TLWG  A+ D   W+  P+VAFKG+  S
Sbjct:    1 WKIKARVTSKSDIRRWSNARGEGTLFSIDLLDSAGGEIRATFFKDACEKWFPQLEEQKVYTFSGGRLKVGDRKYSTMRNEYELTFDANSEIQHCADDNDIKTMNYNFMKISDLPQVEANATVDLLAIVRSAGECSELISQKMGGKTLHKRELVLYDDSGFDVRLTLWGDRAQADT-PWNDGPIVAFKGLGVS 191          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK)

HSP 1 Score: 204 bits (519), Expect = 3.110e-57
Identity = 103/219 (47.03%), Postives = 148/219 (67.58%), Query Frame = 1
Query:  274 SNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFEDCKRF--QLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
            +++ PV R+       PIASLNPY NRW IKAR+T++S IR+WSN RGEG L S+DLLD +G+EI+ T FK + DR YE LQEG V+  SGG++KVANK+++S+K++YEITF   T +E   D++ I    ++FV + A+       M+D+I +VKS  +      +   GKE +KR+LTLVD +  E+ +T+WG  A     +W+ +PVVAFKG++AS
Sbjct:  189 TSTGPVARENPNAQYQPIASLNPYQNRWTIKARVTKRSDIRRWSNARGEGHLASVDLLDAEGTEIRATMFKEDCDRLYERLQEGKVFSFSGGRLKVANKQYTSIKNDYEITFGSETVVEGPLDEAGIEQNKFSFVDIAALSPDAG--MVDLIAVVKSAGELSTIISKKQGGKELQKRDLTLVDRSGAEVRLTVWGESALAQA-QWEHSPVVAFKGLRAS 404          
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Match: A0A7S2D1P3_9STRA (Replication protein A subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1P3_9STRA)

HSP 1 Score: 202 bits (515), Expect = 4.880e-57
Identity = 106/220 (48.18%), Postives = 139/220 (63.18%), Query Frame = 1
Query:  268 TGSNSAPVQRQQQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLDTDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYEITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEA-TEPNVMMDVIGIVKSFEDCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVVAFKGVKAS 924
            T S S P+ R      C PIA LNPY NRW IKA +  K   ++WSN RG G LF IDL D DGSEI   FFK    ++Y+ L+ G +Y  S GKIK+ANKKF +   +YEI FD  + I  V+D SRI  M+YNF KL+++E     NV +DV+ +VKS+ +C       G+ET+KR+L LVDDT  E+++TLWGS A   +  W+  PVVAFK ++ S
Sbjct:  128 TPSASGPIVRASPGVKCTPIAGLNPYQNRWTIKAAVMSKGEKKEWSNDRGSGCLFKIDLQDDDGSEISAAFFKDAVTKFYDMLEVGNIYTFSRGKIKMANKKFRNNNCDYEINFDTMSEICLVDDGSRIQ-MSYNFTKLDSLEQYAGTNVPVDVLAVVKSYTECLSLTTKKGRETQKRDLKLVDDTNLEVSVTLWGSHADNAEL-WEGCPVVAFKKLRVS 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61306.13681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE1.990e-9364.98Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU1_ECTSI3.670e-7565.17Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
A0A6U0TYW6_9STRA1.660e-6752.29Replication protein A subunit n=1 Tax=Pinguiococcu... [more]
W7T7F5_9STRA2.370e-6449.07Replication protein A subunit n=1 Tax=Nannochlorop... [more]
A0A4D9CR27_9STRA6.130e-6349.07Replication protein A subunit n=1 Tax=Nannochlorop... [more]
A0A7S2V6G1_9STRA3.070e-5947.06Replication protein A subunit n=1 Tax=Fibrocapsa j... [more]
A0A835Z8X4_9STRA6.390e-5947.64Replication protein A subunit n=1 Tax=Tribonema mi... [more]
A0A812QY53_SYMMI2.420e-5846.88RPA1C protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S3XQ94_HETAK3.110e-5747.03Replication protein A subunit n=1 Tax=Heterosigma ... [more]
A0A7S2D1P3_9STRA4.880e-5748.18Replication protein A subunit n=1 Tax=Dictyocha sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61306contigH-elongata_contig61306:205..3035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue4.7e-62
Seed eggNOG ortholog2880.D7FUU1
Preferred nameRFA1
KEGG koko:K07466
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000280,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005662,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006268,GO:0006278,GO:0006279,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007063,GO:0007088,GO:0007127,GO:0007131,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010638,GO:0010639,GO:0010833,GO:0010948,GO:0016043,GO:0016567,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022402,GO:0022414,GO:0030491,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032392,GO:0032446,GO:0032508,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0036211,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045184,GO:0045786,GO:0045839,GO:0045875,GO:0045930,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070647,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0071922,GO:0071923,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098687,GO:0098847,GO:0106111,GO:0106112,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902969,GO:1903046,GO:1903047,GO:1903827,GO:1903828,GO:1904356,GO:1904358,GO:1905405,GO:1905412,GO:1905634,GO:2000112,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.DNA recombination
EggNOG OGsCOG1599@1,KOG0851@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-06_001110.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size936
Cds size936
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61306.13681.1prot_H-elongata_contig61306.13681.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61306 205..3035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930989.2433753-CDS-H-elongata_contig61306:204..3671622930989.2433753-CDS-H-elongata_contig61306:204..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 205..367 -
1691679652.6214335-CDS-H-elongata_contig61306:204..3671691679652.6214335-CDS-H-elongata_contig61306:204..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 205..367 -
1622930989.2564878-CDS-H-elongata_contig61306:564..5811622930989.2564878-CDS-H-elongata_contig61306:564..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 565..581 -
1691679652.6315873-CDS-H-elongata_contig61306:564..5811691679652.6315873-CDS-H-elongata_contig61306:564..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 565..581 -
1622930989.2712917-CDS-H-elongata_contig61306:1164..12551622930989.2712917-CDS-H-elongata_contig61306:1164..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 1165..1255 -
1691679652.6396098-CDS-H-elongata_contig61306:1164..12551691679652.6396098-CDS-H-elongata_contig61306:1164..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 1165..1255 -
1622930989.2904222-CDS-H-elongata_contig61306:1577..16841622930989.2904222-CDS-H-elongata_contig61306:1577..1684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 1578..1684 -
1691679652.6552196-CDS-H-elongata_contig61306:1577..16841691679652.6552196-CDS-H-elongata_contig61306:1577..1684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 1578..1684 -
1622930989.3091013-CDS-H-elongata_contig61306:2139..23261622930989.3091013-CDS-H-elongata_contig61306:2139..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 2140..2326 -
1691679652.6674683-CDS-H-elongata_contig61306:2139..23261691679652.6674683-CDS-H-elongata_contig61306:2139..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 2140..2326 -
1622930989.3287163-CDS-H-elongata_contig61306:2664..30351622930989.3287163-CDS-H-elongata_contig61306:2664..3035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 2665..3035 -
1691679652.6776059-CDS-H-elongata_contig61306:2664..30351691679652.6776059-CDS-H-elongata_contig61306:2664..3035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61306 2665..3035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61306.13681.1

>prot_H-elongata_contig61306.13681.1 ID=prot_H-elongata_contig61306.13681.1|Name=mRNA_H-elongata_contig61306.13681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=312bp
ISLLPNLPPSLGGGGGGNYGGRGNYGGSGGRGNYGRGGGGDNYGGRGGGN
YGGGGNYGGGGGGGNYGGGGGGGGGYRGSSAGNPYSNRSTGSNSAPVQRQ
QQEDACMPIASLNPYHNRWVIKARITQKSAIRKWSNTRGEGTLFSIDLLD
TDGSEIKGTFFKTEADRWYEHLQEGLVYRISGGKIKVANKKFSSLKSEYE
ITFDQGTSIERVEDDSRIMSMTYNFVKLNAMEATEPNVMMDVIGIVKSFE
DCKRFQLLSGKETEKRNLTLVDDTCTEITMTLWGSLAKEDDWRWDKNPVV
AFKGVKASMRY*
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mRNA from alignment at H-elongata_contig61306:205..3035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61306.13681.1 ID=mRNA_H-elongata_contig61306.13681.1|Name=mRNA_H-elongata_contig61306.13681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2831bp|location=Sequence derived from alignment at H-elongata_contig61306:205..3035- (Himanthalia elongata Himel1 dioecious)
ATTTCGCTCTTGCCTAATCTTCCGCCATCTTTAGGCGGAGGTGGTGGTGG TAACTATGGAGGACGAGGAAACTATGGCGGTAGCGGCGGAAGAGGTAACT ATGGCCGAGGGGGGGGCGGAGACAACTACGGAGGAAGGGGAGGAGGCAAC TATGGAGGAGGAGGCAACTACGGAGGAGGAGGAGGAGGAGGCAACTATGG AGGAGGAGGAGGAGGAGGAGGAGGCTACCGTGGTAGTTCGGCAGGAAACC CTTACTCAAATCGCAGCACAGGGTCAAACAGCGCGCCCGTACAAAGGCAG CAGCAAGAAGATGCTTGTATGCCCATCGCATCGCTGAACCCTTACCACAA CCGCTGGGTGATCAAGGCCAGGTTCGAGAAAAAAAAAATGTATTTGTTCG AGAGGTCTAGCTTCAAGGCGTAGGCTGATAACATATTTCGCTTAGATTCC TCCCCCTCCTTATATGTGGTGCGATATTTTGGGGGATGCAGGGCGAGTAG GAAGAAGTAGCGAGTTGGATTGTCAATTTTTTGCCTCTGATTTTAGATCC AGTGAAAACGACTAAAGACGAGTCAAACGTTTTACAGTTGTAGGTTGCTG CGCGCTTCAAAATTCTCCTCAAGGCATTCAAGCTTAAAATTCTCGAGAAC GCATCTACGTATGGAAACGCCGTGGTTTGTCATTTTGCTGGACGCCTCCC GTGTAACAGGATAACTCAGAAGTCAGCGATACGTAAGTGGAGCAACACCC GCGGGGAGGGTACCCTCTTTTCCATCGACCTCCTGGATACCGATGGCTCT GAGATTAAGGGCACTTTCTTCAAGACGGAGGCAGATAGATGGTATGAACA CCTTCAAGAAGGACTTGTGTATCGCATCTCCGGCGGAAAGATCAAGGTAC GCGTCCCGAATTTCCCCTCAAAACGAAAGATATTTGCACTGGAGTTTCTG AGGACTTGAGCGCGAACTCGCGTGTCTAGAATCGGCCTTTGGTGAACTTG ATCCCCGGTTTGGTTTGACCCTACCTCCGGGAGAGTGCAATGTCCCGTGT CTAATATATAGACGTATACACGAGGTTAATTTGTAGCTTGACTGAGGCGG TCGCTTCTTAAAGAATAACAGGGGCATGTAAAGGTAGGCCCGTTTCCATT TTTAATTCAAGCATAATGGATAAATGACTGATTACCTGCGAGAAAAACAT TTCGAGCAGAGACGTGTTTGTTTGTTTTTGCGGAATGTTAATCGCGTGAT GGACATGATAATATGATCCTCTAGAGCTCCTATTGACGGGCCTTGACCGG CTTTTCGTTCTCGTCCACGCGGGGGGATGTCTACGATCACCGCCTTAACA GGTCGCCAACAAGAAGTTCTCCTCGCTCAAGTCAGAGTACGAGATCACTT TCGACCAGGGAACAAGCATCGAACGCGTGGAGGACGATTCCCGCATCATG AGCATGACGTAAGATGCCTTTTAGCGGAAGACAAGCCAACAGGATTGGCA AGTTATAGGAAATAATCTGGTAGAACTATGTGTTCATTGTATACTAGTAT ATCACGAAGCAATCATCCAGGGGTAAATCTTTCCTTTAAAAATAGCATCG ATCGGGAGAATGGGGTAAACACCTCTCGTATACGTATGTATTTGTAATTT TTTTTTATAACAAGGTAGAATACATGAAAGTCTAACGAAAAAAGACACGC CGAGCGAATGAGGTTGTTGGTGTGTCACGCGCCTCCTTGGCCTCGTCTCG TGTGTGTTGGTCCGTGCCGGGGAGGAGCAGGTACAACTTCGTCAAACTCA ATGCAATGGAAGCGACGGAGCCTAACGTCATGATGGACGTCATCGGAATC GTGAAGAGCTTCGAAGACTGCGTCACCATCACGACCAGGCGAGCTCATGA GCAGCCTGATAGGGACACAGATGCTAAAACGTACACTCTCATTACTGCGC TTGAATTGCTTGGACTTACACGGTGTTTTGTGACAAGGTGGCGCGTGCAA GGCTTTTCTAGGTGATTGAAGGCGTGGCGAACAGAGGGAGGGGGGAGATC GCGGAACGGCTAAGGCTTCAGGGTCAAAGACCTCTTCAGTCACCGATGAA TGCTTGTTTTGGATATCGGGCGAGGCTCGGTAATCGGTCCTTTCTACCAC CTACTCTACGTGTTTTGGAATATCGTTTTGATAGTTTGATCGTCGAAGTG TCGCCTGCGCCTGCGAAGGGTACATACAGATCGAGGACCAAAGCCGAAGT GTGTAAATTAGCTTGAGCACAGGTTAAGCGTGGCATGCGATAATATTGGG AAAGAAAGGCTTAGGGGCGGAATTGAAGTAGTCGCGTTACTTGCACAAAC TCTAGATGAATAGCTTATTGTCGTACTTTGCGTTACCCACCCGACAGGAT GTAACGTGCGCTTAACGTACACACAAAAGTGGGCAACATAAAATGTTTTT GAAGAAACGGTTTCAACTCTTGTGTTTTCTCTCTCGTAAGCTGCCTCGAA TGAAAAATACAAGCGGGCCGTCTATGCTCATCCTGCGTTTTGCGTGTTTG GGCTCGAATGCTTGTCTGGTGCGATTCTGCGGAGCTCTCTCGCGAATATA TCCGTTCCATTCGCTGATAGCCCCCCTTACCCTGCTGTGGCGGTTTGATG GTGATGGCCATGCTTCAGGAGCGGCAAGGAAACGGAAAAGCGAAACCTCA CTCTGGTGGATGACACGTGCACTGAGATCACCATGACGCTTTGGGGAAGC TTGGCGAAGGAGGACGATTGGCGGTGGGATAAAAACCCAGTTGTGGCCTT TAAGGGCGTCAAGGCGAGTATGCGTTATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig61306:205..3035-

>mRNA_H-elongata_contig61306.13681.1 ID=mRNA_H-elongata_contig61306.13681.1|Name=mRNA_H-elongata_contig61306.13681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1872bp|location=Sequence derived from alignment at H-elongata_contig61306:205..3035- (Himanthalia elongata Himel1 dioecious)
ATTTCGCTCTTGCCTAATCTTCCGCCATCTTTAGGCGGAGGTGGTGGTGG
TAACTATGGAGGACGAGGAAACTATGGCGGTAGCGGCGGAAGAGGTAACT
ATGGCCGAGGGGGGGGCGGAGACAACTACGGAGGAAGGGGAGGAGGCAAC
TATGGAGGAGGAGGCAACTACGGAGGAGGAGGAGGAGGAGGCAACTATGG
AGGAGGAGGAGGAGGAGGAGGAGGCTACCGTGGTAGTTCGGCAGGAAACC
CTTACTCAAATCGCAGCACAGGGTCAAACAGCGCGCCCGTACAAAGGCAG
CAGCAAGAAGATGCTTGTATGCCCATCGCATCGCTGAACCCTTACCACAA
CCGCTGGGTGATCAAGGCCAGATTTCGCTCTTGCCTAATCTTCCGCCATC
TTTAGGCGGAGGTGGTGGTGGTAACTATGGAGGACGAGGAAACTATGGCG
GTAGCGGCGGAAGAGGTAACTATGGCCGAGGGGGGGGCGGAGACAACTAC
GGAGGAAGGGGAGGAGGCAACTATGGAGGAGGAGGCAACTACGGAGGAGG
AGGAGGAGGAGGCAACTATGGAGGAGGAGGAGGAGGAGGAGGAGGCTACC
GTGGTAGTTCGGCAGGAAACCCTTACTCAAATCGCAGCACAGGGTCAAAC
AGCGCGCCCGTACAAAGGCAGCAGCAAGAAGATGCTTGTATGCCCATCGC
ATCGCTGAACCCTTACCACAACCGCTGGGTGATCAAGGCCAGGATAACTC
AGAAGTCAGCGATACGTAAGTGGAGCAACACCCGCGGGGAGGGTACCCTC
TTTTCCATCGACCTCCTGGATACCGATGGCTCTGAGATTAAGGGCACTTT
CTTCAAGACGGAGGCAGATAGATGGTATGAACACCTTCAAGAAGGACTTG
TGTATCGCATCTCCGGCGGAAAGATCAAGGATAACTCAGAAGTCAGCGAT
ACGTAAGTGGAGCAACACCCGCGGGGAGGGTACCCTCTTTTCCATCGACC
TCCTGGATACCGATGGCTCTGAGATTAAGGGCACTTTCTTCAAGACGGAG
GCAGATAGATGGTATGAACACCTTCAAGAAGGACTTGTGTATCGCATCTC
CGGCGGAAAGATCAAGGTCGCCAACAAGAAGTTCTCCTCGCTCAAGTCAG
AGTACGAGATCACTTTCGACCAGGGAACAAGCATCGAACGCGTGGAGGAC
GATTCCCGCATCATGAGCATGACGTCGCCAACAAGAAGTTCTCCTCGCTC
AAGTCAGAGTACGAGATCACTTTCGACCAGGGAACAAGCATCGAACGCGT
GGAGGACGATTCCCGCATCATGAGCATGACGTACAACTTCGTCAAACTCA
ATGCAATGGAAGCGACGGAGCCTAACGTCATGATGGACGTCATCGGAATC
GTGAAGAGCTTCGAAGACTGCGTACAACTTCGTCAAACTCAATGCAATGG
AAGCGACGGAGCCTAACGTCATGATGGACGTCATCGGAATCGTGAAGAGC
TTCGAAGACTGCAAACGGTTTCAACTCTTAAACGGTTTCAACTCTTGAGC
GGCAAGGAAACGGAAAAGCGAAACCTCACTCTGGTGGATGACACGTGCAC
TGAGATCACCATGACGCTTTGGGGAAGCTTGGCGAAGGAGGACGATTGGC
GGTGGGATAAAAACCCAGTTGTGGCCTTTAAGGGCGTCAAGGCGAGTATG
CGTTATTAGGAGCGGCAAGGAAACGGAAAAGCGAAACCTCACTCTGGTGG
ATGACACGTGCACTGAGATCACCATGACGCTTTGGGGAAGCTTGGCGAAG
GAGGACGATTGGCGGTGGGATAAAAACCCAGTTGTGGCCTTTAAGGGCGT
CAAGGCGAGTATGCGTTATTAG
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