prot_H-elongata_contig61301.13680.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61301.13680.1
Unique Nameprot_H-elongata_contig61301.13680.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length90
Homology
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: D7FM04_ECTSI (Similar to voltage-dependent calcium channel T-type alpha 1I subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM04_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.140e-33
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0
Query:    1 VCGE-YNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEAWIYFVALIIIGNVFLVS 79
            VCG+ Y+CPDGY+CT      LN G+TGY DIWHA+LQ FQVVSLDGWQQVMWHTQD+AGE  WI+FVAL+++GNV LVS
Sbjct:  189 VCGKGYSCPDGYVCTDSGHVALNDGVTGYHDIWHALLQTFQVVSLDGWQQVMWHTQDSAGEGTWIFFVALLVLGNVVLVS 268          
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V1H227_9BILA (Voltage-dependent calcium channel type A subunit alpha-1 n=2 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1H227_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 8.190e-14
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    3 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 79
            G Y+CP+G IC K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  256 GAYHCPEGTIC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 332          
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V1H1D6_9BILA (Voltage-gated calcium channel subunit alpha Cav2.2 n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V1H1D6_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 8.230e-14
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    3 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 79
            G Y+CP+G IC K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  182 GAYHCPEGTIC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 258          
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A835ZJT8_9STRA (Ion transport protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJT8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.140e-13
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    5 YNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEAWIYFVALIIIGNVFLV 78
            Y CP G+ C +      + G T Y +IW A LQ F+ +SL+GWQ   WHT DA G  AW++++ +I+ GNV LV
Sbjct:  199 YQCPAGFECMR-HGAGPDGGATSYDNIWIASLQVFKALSLEGWQAAAWHTSDAVGAWAWVFYLIVILAGNVLLV 271          
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A1Y3EP44_9BILA (Transporter, cation channel family protein n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EP44_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 1.880e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
Query:    3 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 79
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  208 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 284          
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V1BF83_TRISP (Voltage-dependent calcium channel type A subunit alpha-1 n=9 Tax=Trichinella TaxID=6333 RepID=A0A0V1BF83_TRISP)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
Query:    3 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 79
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  228 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 304          
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V0TSN8_9BILA (Voltage-dependent calcium channel type A subunit alpha-1 n=32 Tax=Trichinella TaxID=6333 RepID=A0A0V0TSN8_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
Query:    3 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 79
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  228 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 304          
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V0WXW2_9BILA (Voltage-dependent calcium channel type A subunit alpha-1 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V0WXW2_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
Query:    3 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 79
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  228 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 304          
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V1CJN3_TRIBR (Voltage-dependent calcium channel type A subunit alpha-1 n=7 Tax=Trichinella TaxID=6333 RepID=A0A0V1CJN3_TRIBR)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
Query:    3 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 79
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  252 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 328          
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A3P6SQV0_DIBLA (Ion_trans domain-containing protein (Fragment) n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P6SQV0_DIBLA)

HSP 1 Score: 69.7 bits (169), Expect = 5.890e-13
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 0
Query:    3 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 79
            G + CP GYIC    +   NYGIT + +I +AML  FQ ++++GW  +M+ T DA G+    +YFV LI++G+ F+++
Sbjct:   35 GAFRCPPGYICKGYWEGP-NYGITSFDNIGYAMLTVFQCITMEGWTDIMYTTDDAIGDRFNALYFVPLIVLGSFFMLN 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM04_ECTSI2.140e-3371.25Similar to voltage-dependent calcium channel T-typ... [more]
A0A0V1H227_9BILA8.190e-1443.59Voltage-dependent calcium channel type A subunit a... [more]
A0A0V1H1D6_9BILA8.230e-1443.59Voltage-gated calcium channel subunit alpha Cav2.2... [more]
A0A835ZJT8_9STRA1.140e-1344.59Ion transport protein-domain-containing protein n=... [more]
A0A1Y3EP44_9BILA1.880e-1342.31Transporter, cation channel family protein n=1 Tax... [more]
A0A0V1BF83_TRISP3.940e-1342.31Voltage-dependent calcium channel type A subunit a... [more]
A0A0V0TSN8_9BILA3.940e-1342.31Voltage-dependent calcium channel type A subunit a... [more]
A0A0V0WXW2_9BILA3.940e-1342.31Voltage-dependent calcium channel type A subunit a... [more]
A0A0V1CJN3_TRIBR3.940e-1342.31Voltage-dependent calcium channel type A subunit a... [more]
A0A3P6SQV0_DIBLA5.890e-1341.03Ion_trans domain-containing protein (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 22..79
e-value: 9.8E-12
score: 44.6
NoneNo IPR availableGENE3D1.10.287.70coord: 13..89
e-value: 2.9E-11
score: 45.2
NoneNo IPR availablePANTHERPTHR45628:SF7VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1coord: 2..79
NoneNo IPR availablePANTHERPTHR45628FAMILY NOT NAMEDcoord: 2..79
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..80
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..89
NoneNo IPR availableTMHMMTMhelixcoord: 62..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61301contigH-elongata_contig61301:2763..3314 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61301.13680.1mRNA_H-elongata_contig61301.13680.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61301 2763..3314 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61301.13680.1 ID=prot_H-elongata_contig61301.13680.1|Name=mRNA_H-elongata_contig61301.13680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
VCGEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQV
MWHTQDAAGEEAWIYFVALIIIGNVFLVSVRSDFLVHRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom