mRNA_H-elongata_contig61280.13676.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61280.13676.1
Unique NamemRNA_H-elongata_contig61280.13676.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A2P6RES3_ROSCH (Putative transcription factor WD40-like family n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RES3_ROSCH)

HSP 1 Score: 89.0 bits (219), Expect = 6.300e-20
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASNRDS 195
            R+A++W+ E G  + T  GH  RLARI FHPSG+YLGT SFD TWRLWD+E GEELLLQ  +  S
Sbjct:   90 RTARLWNSE-GAHLMTFGGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVETGEELLLQEGHSRS 153
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BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A835YL38_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL38_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.840e-20
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   10 KVWDC--ESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 177
            KV  C   +G+C+QTL GHA RLAR+ FHP GRY+GTAS+DHTWRLWD+E G +LLLQ
Sbjct:  294 KVGACVVHAGKCLQTLTGHADRLARVEFHPCGRYVGTASYDHTWRLWDVETGAQLLLQ 351
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BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: UPI00053B0164 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B0164)

HSP 1 Score: 89.7 bits (221), Expect = 1.920e-19
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 177
            R+AK+W  + G  VQT +GH  RLAR+ FHPSGRYLGT SFD TWRLWDI  G ELLLQ
Sbjct:  211 RTAKLWKTD-GTLVQTFEGHLDRLARVAFHPSGRYLGTTSFDKTWRLWDINTGAELLLQ 268
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BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A6A4LZK8_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LZK8_9ERIC)

HSP 1 Score: 86.7 bits (213), Expect = 1.030e-18
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    7 AKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 177
            A++W+ E G  + T +GH  RLARI FHPSG+YLGT S+D TWRLWDI+ GEELLLQ
Sbjct:  142 ARLWNTE-GSLLNTFEGHLDRLARIAFHPSGKYLGTTSYDKTWRLWDIDTGEELLLQ 197
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BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A1Y1HKQ5_KLENI (U4/U6 small nuclear ribonucleoprotein PRP4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HKQ5_KLENI)

HSP 1 Score: 86.7 bits (213), Expect = 3.060e-18
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 177
            R+AK+W+ +  E V+T  GH  RLARI FHPSGRYLGTASFD TWRLW +E G E+LLQ
Sbjct:  338 RTAKLWNLKGKE-VRTFSGHLDRLARIAFHPSGRYLGTASFDKTWRLWHLETGVEMLLQ 395
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BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: D7L994_ARALL (Uncharacterized protein n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7L994_ARALL)

HSP 1 Score: 85.5 bits (210), Expect = 3.500e-18
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASNRDS 195
            R+AK+W+ + G  +QT +GH  RLARI FHPSG+YLGT SFD TWRLWDI  G E+L Q  +  S
Sbjct:  105 RTAKLWNID-GTLLQTFKGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDINTGIEILSQGGHSRS 168
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BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: UPI000A29D665 (LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29D665)

HSP 1 Score: 85.5 bits (210), Expect = 4.210e-18
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASNRDS 195
            R+AK+W+ + G  +QT +GH  RLARI FHPSG+YLGT SFD TWRLWDI  G E+L Q  +  S
Sbjct:  126 RTAKLWNID-GTLLQTFKGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDINTGIEILSQGGHSRS 189
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BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A072V5R5_MEDTR (U4/U6 small nuclear ribonucleoprotein PRP4 n=6 Tax=IRL clade TaxID=2233839 RepID=A0A072V5R5_MEDTR)

HSP 1 Score: 85.9 bits (211), Expect = 5.560e-18
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 177
            R+AK W+ + G  + T +GH  RLARI FHPSG+YLGTAS+D TWRLWD+E  EELLLQ
Sbjct:  337 RTAKYWN-DQGALLGTFKGHLERLARIAFHPSGKYLGTASYDKTWRLWDVETEEELLLQ 394
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BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: B9SVT1_RICCO (U4/U6 small nuclear ribonucleoprotein Prp4, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9SVT1_RICCO)

HSP 1 Score: 85.5 bits (210), Expect = 7.720e-18
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASNRDS 195
            R+AK+W+ + G  + T  GH  RLARI FHPSG+YLGT SFD TWRLWD++ G ELLLQ  +  S
Sbjct:  314 RTAKLWNTD-GLVLGTFHGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVDTGAELLLQEGHSRS 377
[Close]
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A438DKL7_VITVI (U4/U6 small nuclear ribonucleoprotein PRP4-like protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DKL7_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 1.910e-17
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   40 VQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASN 186
            ++T +GH  RLARI FHPSG+YLGTASFD TWRLWD+E GEELLLQ  +
Sbjct:  331 LKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGS 379
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6RES3_ROSCH6.300e-2061.54Putative transcription factor WD40-like family n=1... [more]
A0A835YL38_9STRA9.840e-2067.24Quinon protein alcohol dehydrogenase-like superfam... [more]
UPI00053B01641.920e-1967.80U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
A0A6A4LZK8_9ERIC1.030e-1864.91Uncharacterized protein (Fragment) n=1 Tax=Rhodode... [more]
A0A1Y1HKQ5_KLENI3.060e-1866.10U4/U6 small nuclear ribonucleoprotein PRP4 n=1 Tax... [more]
D7L994_ARALL3.500e-1858.46Uncharacterized protein n=1 Tax=Arabidopsis lyrata... [more]
UPI000A29D6654.210e-1858.46LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucle... [more]
A0A072V5R5_MEDTR5.560e-1864.41U4/U6 small nuclear ribonucleoprotein PRP4 n=6 Tax... [more]
B9SVT1_RICCO7.720e-1858.46U4/U6 small nuclear ribonucleoprotein Prp4, putati... [more]
A0A438DKL7_VITVI1.910e-1771.43U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61280contigH-elongata_contig61280:1601..1810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.7
Seed ortholog evalue5.7e-16
Seed eggNOG ortholog90675.XP_010507476.1
KEGG koko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0008152,GO:0008380,GO:0009553,GO:0009560,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0017070,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030312,GO:0030532,GO:0030621,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045165,GO:0046483,GO:0046540,GO:0048229,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:0070013,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U4 U6 small nuclear ribonucleoprotein PRP4-like protein
EggNOG OGs37HYM@33090,3GC5P@35493,3HQMJ@3699,KOG0272@1,KOG0272@2759
COG Functional cat.A
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.821783-CDS-H-elongata_contig61280:1600..18101622930988.821783-CDS-H-elongata_contig61280:1600..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61280 1601..1810 -
1691679652.4853647-CDS-H-elongata_contig61280:1600..18101691679652.4853647-CDS-H-elongata_contig61280:1600..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61280 1601..1810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61280.13676.1prot_H-elongata_contig61280.13676.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61280 1601..1810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61280.13676.1

>prot_H-elongata_contig61280.13676.1 ID=prot_H-elongata_contig61280.13676.1|Name=mRNA_H-elongata_contig61280.13676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDI
ERGEELLLQASNRDSKGGG*
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mRNA from alignment at H-elongata_contig61280:1601..1810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61280.13676.1 ID=mRNA_H-elongata_contig61280.13676.1|Name=mRNA_H-elongata_contig61280.13676.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig61280:1601..1810- (Himanthalia elongata Himel1 dioecious)
AGGAGCGCGAAGGTGTGGGACTGCGAGAGCGGAGAGTGCGTTCAGACGCT
GCAAGGGCACGCAGGGCGTTTGGCGAGGATAGGCTTCCACCCGAGCGGGC
GATACTTGGGCACCGCTAGTTTTGACCACACGTGGAGGCTCTGGGATATC
GAAAGGGGCGAAGAACTTCTCCTACAGGCGAGTAATCGAGATAGCAAGGG
GGGGGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig61280:1601..1810-

>mRNA_H-elongata_contig61280.13676.1 ID=mRNA_H-elongata_contig61280.13676.1|Name=mRNA_H-elongata_contig61280.13676.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig61280:1601..1810- (Himanthalia elongata Himel1 dioecious)
AGGAGCGCGAAGGTGTGGGACTGCGAGAGCGGAGAGTGCGTTCAGACGCT
GCAAGGGCACGCAGGGCGTTTGGCGAGGATAGGCTTCCACCCGAGCGGGC
GATACTTGGGCACCGCTAGTTTTGACCACACGTGGAGGCTCTGGGATATC
GAAAGGGGCGAAGAACTTCTCCTACAGGCGAGTAATCGAGATAGCAAGGG
GGGGGGGTAGAGGAGCGCGAAGGTGTGGGACTGCGAGAGCGGAGAGTGCG
TTCAGACGCTGCAAGGGCACGCAGGGCGTTTGGCGAGGATAGGCTTCCAC
CCGAGCGGGCGATACTTGGGCACCGCTAGTTTTGACCACACGTGGAGGCT
CTGGGATATCGAAAGGGGCGAAGAACTTCTCCTACAGGCGAGTAATCGAG
ATAGCAAGGGGGGGGGGTAG
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