prot_H-elongata_contig117475.1367.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117475.1367.1
Unique Nameprot_H-elongata_contig117475.1367.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: D8LIC7_ECTSI (Intraflagellar transport protein 80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC7_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.090e-30
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 0
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGED 72
            V  L+AFVTSV WFPSSG  + D+FAA+CSDGTVRL TRAGREEKKV+ H+GA  C+RWSPDGSALCSCGED
Sbjct:   49 VTGLDAFVTSVDWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKVSAHMGAVVCIRWSPDGSALCSCGED 120          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A835ZN10_9STRA (Intraflagellar transport protein 80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN10_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.780e-25
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 77
            V T E + TS++WFPS  K   D+F   CSDGT R F+RAGREEKKV  H GA   V WS DGSALCSCGEDGDVKV
Sbjct:   49 VTTTEPYGTSMSWFPSVSKQVSDLFVMGCSDGTFRFFSRAGREEKKVDAHTGAVVRVAWSYDGSALCSCGEDGDVKV 125          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A7S3M0Q2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M0Q2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.460e-24
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0
Query:    4 LEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 77
            +  FVT + WFPS+GK  PD FA SCSDGT R  +R+GREEKKVA H GA   +RWS DG+A+ + GEDGD+K+
Sbjct:   50 ISVFVTGIAWFPSTGKQAPDTFAMSCSDGTFRFVSRSGREEKKVAAHSGAVILIRWSHDGAAILTAGEDGDIKI 123          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: F0Y8Y1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8Y1_AURAN)

HSP 1 Score: 93.2 bits (230), Expect = 2.790e-20
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0
Query:    2 ATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 77
            A L+ + TS+ W P+ GK   D+FA SC+DGT+RL T  GREEKKVA H GAA  V W+ +GSAL S GEDG++KV
Sbjct:   50 AQLDTYPTSIAWMPNIGKGASDVFALSCADGTLRLMTGGGREEKKVAAHHGAALRVVWNFEGSALYSAGEDGEIKV 125          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: K3WVM6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVM6_GLOUD)

HSP 1 Score: 92.0 bits (227), Expect = 7.090e-20
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 77
            VA++EAFVT++ W PS GK   D FA SC+DGT RL ++ GREEKKV    GA   ++W+ DG+AL + GEDG +K+
Sbjct:   50 VASMEAFVTTIDWVPSVGKQAADTFAVSCTDGTFRLMSKTGREEKKVQACDGAVIVLKWNYDGTALVTAGEDGTIKI 126          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: F0WV09_9STRA (KIAA1374 protein putative n=3 Tax=Albugo TaxID=65356 RepID=F0WV09_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.360e-19
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 77
            + T++A+VTS+ W PS GK   D FA +C+DGT RL T++GREEK+V    GA   ++W+ DG+AL + GEDG +K+
Sbjct:   50 ITTIDAYVTSIDWIPSIGKQAADTFAVACTDGTFRLITKSGREEKRVQASEGAVIALKWNYDGTALITAGEDGMLKI 126          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A8K1CRT4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRT4_PYTOL)

HSP 1 Score: 89.7 bits (221), Expect = 4.590e-19
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 0
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKV-APHIGAAACVRWSPDGSALCSCGEDGDVKV 77
            VAT++AFVT+V W PS GK   D FA +C+DGT RL ++ GREEKKV A   GA   ++W+ DG+AL + GEDG +K+
Sbjct:   50 VATMDAFVTAVDWVPSVGKQAADTFAVACTDGTFRLISKTGREEKKVQASDAGAIIALKWNYDGTALVTVGEDGAIKI 127          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A2P4Y101_9STRA (Intraflagellar Transport protein 80 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y101_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.020e-19
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 0
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKV-APHIGAAACVRWSPDGSALCSCGEDGDVKVRNPRVY 83
            V  ++AFVTSV W PS GK + D FA SC+DGT RL +++GREEK+V A   GA   ++W+ DG+AL + GEDG +K+ +  ++
Sbjct:   50 VTKMDAFVTSVHWVPSVGKQSADTFAVSCTDGTFRLISKSGREEKRVQACDAGAVIALKWNYDGTALVTAGEDGTLKICDQLLF 133          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A482RSJ8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSJ8_9ARCH)

HSP 1 Score: 81.3 bits (199), Expect = 1.250e-18
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 0
Query:   24 MFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 77
            MFA SC+DGTVR  +++GREEKK++ H GA   ++WS DG+ALC+ GEDGDVK+
Sbjct:    1 MFAVSCTDGTVRYISKSGREEKKISAHEGAVITMKWSHDGNALCTAGEDGDVKI 54          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A7S1C6H3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6H3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.600e-18
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKV-APHIGAAACVRWSPDGSALCSCGEDGDVKV 77
            VATL+ +VT + WFPS G+   DMF  SCSDGT RL  + GREEK+V A    A   +RWS DG+AL + GEDG VKV
Sbjct:   50 VATLDTYVTDMHWFPSIGRQVADMFVVSCSDGTFRLIHQTGREEKRVEASPTAAIISLRWSYDGAALVTAGEDGAVKV 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC7_ECTSI1.090e-3076.39Intraflagellar transport protein 80 n=2 Tax=Ectoca... [more]
A0A835ZN10_9STRA2.780e-2564.94Intraflagellar transport protein 80 n=1 Tax=Tribon... [more]
A0A7S3M0Q2_9STRA2.460e-2459.46Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F0Y8Y1_AURAN2.790e-2057.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
K3WVM6_GLOUD7.090e-2053.25Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0WV09_9STRA3.360e-1949.35KIAA1374 protein putative n=3 Tax=Albugo TaxID=653... [more]
A0A8K1CRT4_PYTOL4.590e-1953.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4Y101_9STRA7.020e-1948.81Intraflagellar Transport protein 80 (Fragment) n=1... [more]
A0A482RSJ8_9ARCH1.250e-1861.11Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1C6H3_9STRA1.600e-1856.41Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 40..79
e-value: 0.002
score: 27.4
coord: 1..38
e-value: 86.0
score: 4.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 56..77
e-value: 0.0014
score: 19.4
coord: 7..37
e-value: 0.025
score: 15.5
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..82
e-value: 2.2E-13
score: 52.1
NoneNo IPR availablePANTHERPTHR24098:SF0INTRAFLAGELLAR TRANSPORT 80 HOMOLOG (CHLAMYDOMONAS)coord: 3..77
NoneNo IPR availablePANTHERPTHR24098FAMILY NOT NAMEDcoord: 3..77
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 6..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117475contigH-elongata_contig117475:276..771 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117475.1367.1mRNA_H-elongata_contig117475.1367.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117475 276..771 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117475.1367.1 ID=prot_H-elongata_contig117475.1367.1|Name=mRNA_H-elongata_contig117475.1367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPH
IGAAACVRWSPDGSALCSCGEDGDVKVRNPRVY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf