mRNA_H-elongata_contig61280.13675.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61280.13675.1
Unique NamemRNA_H-elongata_contig61280.13675.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: D8LGI0_ECTSI (SFM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.320e-23
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASGS 153
            DGALVATGDLGG  RVWDLRSG+SVWTMEGHVKRITCMDFSPC +EVASGS
Sbjct:  467 DGALVATGDLGGVGRVWDLRSGKSVWTMEGHVKRITCMDFSPCAYEVASGS 517
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A836C808_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C808_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.060e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSP 126
            DGAL ATGD  G  RVWDLRSGR+V ++ GHVKR+T   FSP
Sbjct:    9 DGALAATGDFAGVVRVWDLRSGRAVHSVAGHVKRVTACAFSP 50
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A2S4WDC4_9BASI (SFM domain-containing protein n=1 Tax=Puccinia striiformis TaxID=27350 RepID=A0A2S4WDC4_9BASI)

HSP 1 Score: 62.4 bits (150), Expect = 4.760e-10
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASGS 153
            DGAL+ +G L    RVWDLRSG++V  ++GHVK I  +DFSP  H++A+GS
Sbjct:  349 DGALLCSGGLDAIGRVWDLRSGKTVMVLDGHVKDILAIDFSPNGHQIATGS 399
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A835YL38_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL38_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.510e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSP 126
            DGAL ATGD  G  RVWDLRSGR+V ++ GHVKR+T   FSP
Sbjct:  421 DGALAATGDFAGVVRVWDLRSGRAVHSVAGHVKRVTACAFSP 462
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A7S3M504_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M504_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.110e-8
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDF 120
            DG+LVAT DLGG  RVWDLRSG+SV  + GH K++  +DF
Sbjct:    6 DGSLVATSDLGGVVRVWDLRSGKSVMPLTGHGKQVMSLDF 45
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A7S0QPM6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPM6_9CRYP)

HSP 1 Score: 56.2 bits (134), Expect = 2.390e-8
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDF 120
            DGALVAT  L    R+WDLRSGRSV T++GHVK+I  +DF
Sbjct:   25 DGALVATAGLDAIGRIWDLRSGRSVMTLQGHVKQILGIDF 64
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A7S2UVM4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVM4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.690e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   46 VWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASGS 153
            +WDLRSG+++WTM+GHVKR+   DFSP    +ASGS
Sbjct:    1 LWDLRSGKAIWTMQGHVKRMIAADFSPNGFTLASGS 36
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: UPI001AD8ACBA (U4/U6 small nuclear ribonucleoprotein PRP4-like protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8ACBA)

HSP 1 Score: 53.9 bits (128), Expect = 4.600e-7
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCM 114
            DG+LVAT  L   ARVWDLRSGRS+ T+EGHVK++  +
Sbjct:  213 DGSLVATAGLDALARVWDLRSGRSILTLEGHVKKVLAL 250
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A0L0FPP3_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPP3_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 7.600e-7
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   43 RVWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASGS 153
            RVWDLRSGR VW M GHVK +  +D +P  H +A+GS
Sbjct:    6 RVWDLRSGRCVWDMFGHVKNVLAVDVAPDGHYIATGS 42
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BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: B6A9W5_CRYMR (U4/U6 small nuclear ribonucleoprotein Prp4, putative n=2 Tax=Cryptosporidium TaxID=5806 RepID=B6A9W5_CRYMR)

HSP 1 Score: 52.4 bits (124), Expect = 1.620e-6
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSPCC 132
            DGAL+ATGDLGG   +WDLRSG  +  +  HV +I  + FSP C
Sbjct:  274 DGALLATGDLGGIVNIWDLRSGYLIMPLTEHVGQILSVKFSPRC 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LGI0_ECTSI1.320e-2390.20SFM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836C808_9STRA1.060e-1066.67WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A2S4WDC4_9BASI4.760e-1054.90SFM domain-containing protein n=1 Tax=Puccinia str... [more]
A0A835YL38_9STRA6.510e-1066.67Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A7S3M504_9STRA1.110e-862.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0QPM6_9CRYP2.390e-865.00Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S2UVM4_9STRA2.690e-761.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001AD8ACBA4.600e-763.16U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
A0A0L0FPP3_9EUKA7.600e-759.46Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
B6A9W5_CRYMR1.620e-654.55U4/U6 small nuclear ribonucleoprotein Prp4, putati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61280contigH-elongata_contig61280:84..716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D8LGI0
KEGG koko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015030,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0017070,GO:0030532,GO:0030621,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046540,GO:0070013,GO:0071001,GO:0071005,GO:0071011,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U4 snRNA binding
EggNOG OGsKOG0272@1,KOG0272@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size155
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.7315621-CDS-H-elongata_contig61280:85..1391622930988.7315621-CDS-H-elongata_contig61280:85..139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61280 86..139 -
1691679652.4571044-CDS-H-elongata_contig61280:85..1391691679652.4571044-CDS-H-elongata_contig61280:85..139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61280 86..139 -
1622930988.7457914-CDS-H-elongata_contig61280:617..7161622930988.7457914-CDS-H-elongata_contig61280:617..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61280 618..716 -
1691679652.4738417-CDS-H-elongata_contig61280:617..7161691679652.4738417-CDS-H-elongata_contig61280:617..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61280 618..716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61280.13675.1prot_H-elongata_contig61280.13675.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61280 86..716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61280.13675.1

>prot_H-elongata_contig61280.13675.1 ID=prot_H-elongata_contig61280.13675.1|Name=mRNA_H-elongata_contig61280.13675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASG
S
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mRNA from alignment at H-elongata_contig61280:84..716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61280.13675.1 ID=mRNA_H-elongata_contig61280.13675.1|Name=mRNA_H-elongata_contig61280.13675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=633bp|location=Sequence derived from alignment at H-elongata_contig61280:84..716- (Himanthalia elongata Himel1 dioecious)
GATGGGGCCCTTGTGGCGACGGGAGACCTGGGGGGGACCGCGCGGGTGTG
GGACCTACGGTCCGGCAGGAGCGTGTGGACCATGGAAGGCCACGTCAAGG
TCAGGGATTGCCGAGACTGCAGGCTGGAGACGAATTATAAGTTTTCCACG
CGGAGCAGATTTCCCGATAGTAGAAGGCGGTGGTAGGTCGAGGGTGGGGG
GTTGCTTGTGCCTCCCGTCATTTTCTCCGCTCTGGACGTTATAGTAGGAA
GGACGCCCAAGCGTTTTGGCTGTTCATTTGAGTGTGAGGGGGGTGTTTGT
GCGGTTGTGGTGGTGGGTGTACAAACCTGTCTCGACGCCTTTCAGTAGTA
TATACTACTATTGCGGCCGAAGAAATGGCGGCGAGCACGAATAGTGCGCC
GTTAGCGCTCGAAGGGTTCATCAAAGCACGAAGAAACCCCCTCTCCCGCG
CGCACGAGCAAGTAATGTTGCAAGCCCCTTCGAGGTGCCGCAGTCGCAGC
TGCAAGAAACCGCTTGTGGCCCCGTTTATACCCCCCCCGTATCCTGCTGC
ACGCGGTGTCCCTCCTTTCGTTCGCAGCGCATCACGTGCATGGACTTCTC
CCCATGTTGCCACGAGGTGGCCAGCGGCAGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig61280:84..716-

>mRNA_H-elongata_contig61280.13675.1 ID=mRNA_H-elongata_contig61280.13675.1|Name=mRNA_H-elongata_contig61280.13675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig61280:84..716- (Himanthalia elongata Himel1 dioecious)
GATGGGGCCCTTGTGGCGACGGGAGACCTGGGGGGGACCGCGCGGGTGTG
GGACCTACGGTCCGGCAGGAGCGTGTGGACCATGGAAGGCCACGTCAAGG
ATGGGGCCCTTGTGGCGACGGGAGACCTGGGGGGGACCGCGCGGGTGTGG
GACCTACGGTCCGGCAGGAGCGTGTGGACCATGGAAGGCCACGTCAAGCG
CATCACGTGCATGGACTTCTCCCCATGTTGCCACGAGGTGGCCAGCGGCA
GCCGCATCACGTGCATGGACTTCTCCCCATGTTGCCACGAGGTGGCCAGC
GGCAGC
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