mRNA_H-elongata_contig61239.13670.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A6H5K5N4_9PHAE (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5N4_9PHAE) HSP 1 Score: 312 bits (800), Expect = 1.460e-103 Identity = 155/191 (81.15%), Postives = 172/191 (90.05%), Query Frame = 1
Query: 16 KSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAVIEGAEMVVADVTDPSSIAAALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
K+ D TVAVAGSTGYIGKFVALECVRRGY+TIALTRN AV+EGAEMV+ DVTDP+S+ AAL GR +D ++SCLASRSGTKSDSFAIDYQATLNCL+ AK EGA HFV+LSAFCVKKP LQFQKAKL+FE +L++AG AGEIGYS+VRPTAFFKSVSGQLEVVQ GAPFVVFGDG MCKCNPIAEADL +
Sbjct: 53 KAAKDMTVAVAGSTGYIGKFVALECVRRGYKTIALTRNPDAVVEGAEMVLTDVTDPASVDAALAGRKIDALVSCLASRSGTKSDSFAIDYQATLNCLETAKKEGAAHFVMLSAFCVKKPILQFQKAKLKFEEKLVEAGNAGEIGYSIVRPTAFFKSVSGQLEVVQGGAPFVVFGDGTMCKCNPIAEADLAT 243
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A835ZBC9_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBC9_9STRA) HSP 1 Score: 254 bits (650), Expect = 8.890e-82 Identity = 130/190 (68.42%), Postives = 151/190 (79.47%), Query Frame = 1
Query: 22 PTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAVIEGAEMVVADVTDPSSIAA-ALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEA--GEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADL 582
P DTTV VAG+TGYIGKFV ECVR+GY+T+A+TRN A EGA VVADVT+P + A +GR+VD +ISCLASRSGTKSDS+A+DYQAT NCL + G HFVLLSA+CV+KP LQFQ AKL+FE EL+ A +A + YS+VRPTAFFKSVSGQLEVV+ G PFVVFGDG MCKCNPIAE DL
Sbjct: 9 PADTTVLVAGATGYIGKFVVQECVRQGYKTLAVTRNPDAKFEGATTVVADVTNPDELQKLAFDGRSVDAVISCLASRSGTKSDSWAVDYQATANCLQAGQKAGIKHFVLLSAYCVRKPLLQFQLAKLQFEKELVAASKAETNPVNYSIVRPTAFFKSVSGQLEVVKGGFPFVVFGDGTMCKCNPIAEVDL 198
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A7S3Y013_HETAK (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y013_HETAK) HSP 1 Score: 238 bits (606), Expect = 2.020e-74 Identity = 130/192 (67.71%), Postives = 148/192 (77.08%), Query Frame = 1
Query: 22 PTDTTVAVAGSTGYIGKFVALECVRRGYR-TIALTRNAGAVIE----GAEMVVADVTDPSSIAAALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADL 582
P D+TV V G+TGYIGKFV ECVRRG++ IA+TR+ E GA + VADVT+P SI A EG VD +ISCLASRSGTKSDSF IDYQATLN L+ A+ A HFVLLSAFCV+KPTLQFQ AKL+FE L A +I +S+VRPTAFFKSVSGQLEVVQ+GAPFV FGDG MCKCNPIAE+DL
Sbjct: 63 PKDSTVLVVGATGYIGKFVVQECVRRGFKKVIAVTRSEPQGKEEYFNGANIKVADVTNPESIKTAFEGEQVDAVISCLASRSGTKSDSFLIDYQATLNSLEAARAAKAKHFVLLSAFCVRKPTLQFQLAKLQFEKAL---RSADDITHSIVRPTAFFKSVSGQLEVVQAGAPFVYFGDGTMCKCNPIAESDL 251
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A7S4D9Q0_HETAK (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9Q0_HETAK) HSP 1 Score: 216 bits (551), Expect = 1.070e-65 Identity = 115/194 (59.28%), Postives = 143/194 (73.71%), Query Frame = 1
Query: 22 PTDTTVAVAGSTGYIGKFVALECVRRGYR-TIALTRNA------GAVIEGAEMVVADVTDPSSIAAALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADL 582
P D++V V G+TGYIGKFV ECVRRG++ IA+TR+ +GA++ +ADVT+P SI A + VD +ISCLASR GTK D++ IDYQATLN LD A+ + HFVLLSAFCV+KP LQ Q+AKL+FE L A +I +S+VRPTAFFKSVSGQ+E V+SG PFV FGDG+MCKCNPIAE +L
Sbjct: 67 PKDSSVLVVGATGYIGKFVVQECVRRGFKKVIAVTRSDPLGGKDAKFFDGADIKLADVTNPESIKTAFDEEQVDAVISCLASRWGTKDDAYRIDYQATLNTLDAAREANSKHFVLLSAFCVRKPLLQLQQAKLKFEAAL---QSADDITHSIVRPTAFFKSVSGQMEAVKSGTPFVYFGDGSMCKCNPIAETEL 257
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A448ZEL1_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEL1_9STRA) HSP 1 Score: 213 bits (543), Expect = 3.940e-65 Identity = 114/202 (56.44%), Postives = 145/202 (71.78%), Query Frame = 1
Query: 34 TVAVAGSTGYIGKFVALECVRRGYRTIALTRNA------------GAVIEGAEMVVADVTDPSSIAAALE-----GRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
T +AG+TGYIGK V E VR+GY+TIAL R++ G EGAE++ DV DP+++ +E G +++ +ISCLASRSG K D++AIDYQAT NCLD GA HFVLLSAFC K P LQFQ+AKL+FE +L+ A + +I +++VRPTAFFKSVSGQLEVVQ GAPFV+FGDG + +CNPIAEADL +
Sbjct: 39 TAIIAGATGYIGKSVVRESVRQGYKTIALVRDSEKVNNKQGQALYGQFFEGAEVIECDVCDPAALTKTMEKIKADGGDIEAVISCLASRSGIKKDAYAIDYQATKNCLDSGIATGARHFVLLSAFCCKNPWLQFQQAKLKFEADLVAAQD--KITHTIVRPTAFFKSVSGQLEVVQQGAPFVMFGDGKVTRCNPIAEADLAT 238
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A7R9ZKM2_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKM2_9STRA) HSP 1 Score: 211 bits (538), Expect = 1.940e-64 Identity = 117/200 (58.50%), Postives = 142/200 (71.00%), Query Frame = 1
Query: 43 VAGSTGYIGKFVALECVRRGYRTIALTRNA------------GAVIEGAEMVVADVTDPSSIAAALEG-----RNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGE-IGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
VAG+TGYIGK V E VR+GY+TIAL R+ G +GA++V DV DP+ + ALEG ++ +ISCLASRSG K D++AIDYQAT NCLD A HFVLLSAFCVK P LQFQ+AKL+FE++L EA + + YS+VRPTAFFKSVSGQLEVVQ GAPFV+FGDG + +CNPIAEADL +
Sbjct: 37 VAGATGYIGKSVVRESVRQGYKTIALVRSKDKVESNKGKALYGQFFDGAQIVECDVCDPAQLTKALEGIKSESGKIESVISCLASRSGIKKDAYAIDYQATKNCLDAGMANDARHFVLLSAFCVKNPWLQFQQAKLKFESDL----EAQDKMTYSIVRPTAFFKSVSGQLEVVQQGAPFVMFGDGEVTRCNPIAEADLAT 232
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A9SY59_PHYPA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SY59_PHYPA) HSP 1 Score: 210 bits (535), Expect = 3.420e-63 Identity = 113/207 (54.59%), Postives = 140/207 (67.63%), Query Frame = 1
Query: 10 RGKSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAV------------IEGAEMVVADVTDPSSIAAALEGRN--VDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
R K P DTTV + G+TGYIGKFV E V RGY IA+ R + G+ +V ADV+D SI +AL+ N VD +ISCLASR+G K DS+ IDYQAT N LD GA+HFVLLSA CV+KP L+FQKAKL+FE+EL+ G + YS+VRPTAFFKS+ GQ++ VQ G P+V+FGDG +C C PI+EADL S
Sbjct: 93 RSKEPKDTTVMIVGATGYIGKFVVREMVNRGYNVIAVAREKSGIGGKVDAEQTIRDFPGSTVVFADVSDTDSITSALQSPNINVDVVISCLASRTGGKKDSWKIDYQATRNSLDAGVARGASHFVLLSAICVQKPLLEFQKAKLKFEDELVNYGNG--LTYSIVRPTAFFKSLGGQVQSVQGGGPYVMFGDGKLCACKPISEADLAS 297
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: B8BXU7_THAPS (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXU7_THAPS) HSP 1 Score: 210 bits (535), Expect = 8.950e-63 Identity = 112/205 (54.63%), Postives = 140/205 (68.29%), Query Frame = 1
Query: 28 DTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNA------------GAVIEGAEMVVADVTDPSSIAAALE------GRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
D +AG+TGYIGK E VR+GY+T+AL R+ G EGAE+V DV D + AL+ +D ++SCLASRSG K D++AIDYQATLNCL+ + GA HFVLLSAFCVK P LQFQ+AKL+FE+ L ++ YS+VRPTAFFKSVSGQLEV+QSGAPFV+FGDG + +CNPI+EADL +
Sbjct: 132 DKVAVIAGATGYIGKSTVRESVRQGYKTVALVRDKKKVESDEGKMLYGQFFEGAELVECDVCDAEKLTEALKDISDQYNGKIDAVVSCLASRSGIKKDAYAIDYQATLNCLESGRAVGARHFVLLSAFCVKNPWLQFQQAKLKFESALT---AQSDMSYSIVRPTAFFKSVSGQLEVIQSGAPFVMFGDGEVTRCNPISEADLAT 333
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A4V6MB86_9CHLO (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Chlamydomonas sp. UWO 241 TaxID=1653778 RepID=A0A4V6MB86_9CHLO) HSP 1 Score: 208 bits (530), Expect = 2.110e-62 Identity = 110/205 (53.66%), Postives = 140/205 (68.29%), Query Frame = 1
Query: 10 RGKSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAV------------IEGAEMVVADVTDPSSIAAALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
R K+P D V V G TGYIGKFV E ++RGY +A +R + GA + DV DP SI + VD ++SCLASR+G K DS+AIDYQAT N LDVA+ +GA HFVLLSA CV+KPTL+FQKAKL+FE +L AG+I YS+VRPTAFFKS++GQ+E+V+ G P+V+FGDGN+ C PI+EADL +
Sbjct: 101 RSKAPKDVRVLVVGPTGYIGKFVTNELIKRGYDVVAFSRPKAGIKGKMSKEDTTKEFPGATVCFGDVADPKSIRDVAFEKQVDVVVSCLASRTGGKKDSWAIDYQATKNVLDVAREKGAAHFVLLSAICVQKPTLEFQKAKLKFEGDL---AAAGDITYSIVRPTAFFKSLAGQIELVKQGKPYVMFGDGNLASCKPISEADLAN 302
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: R1D7A7_EMIHU (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D7A7_EMIHU) HSP 1 Score: 203 bits (516), Expect = 1.180e-60 Identity = 122/208 (58.65%), Postives = 139/208 (66.83%), Query Frame = 1
Query: 13 GKSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAV-----IEGAEMVVADVTDPSSIAAA---LEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKP------TLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVF--GDGNMCKCNPIAEADLVS 588
G+S T V V G+TGYIGK V E VRRGY T A+ R+A EGA + ADV DP ++ AA E VD +ISCLASRSG+K DSFAIDYQATLNCLD A+ GA HFVLLSAFCVK LQFQ AK+ FE +L E E+ YS+VRPTAFFKSVSGQLEVV SGAPFV F G+G CNPI+EADL +
Sbjct: 44 GESCTGEKVVVVGATGYIGKAVVRESVRRGYATTAVVRDAAKAAGEPKFEGARIATADVCDPPALGAAGSPFEKGAVDVVISCLASRSGSKKDSFAIDYQATLNCLDAARAAGARHFVLLSAFCVKSAERKDPYALQFQYAKMEFEAKL---REQTEMTYSIVRPTAFFKSVSGQLEVVNSGAPFVYFDLGEGRCATCNPISEADLAA 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61239.13670.1 >prot_H-elongata_contig61239.13670.1 ID=prot_H-elongata_contig61239.13670.1|Name=mRNA_H-elongata_contig61239.13670.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp MTLRGKSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAVIEGback to top mRNA from alignment at H-elongata_contig61239:717..3383- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61239.13670.1 ID=mRNA_H-elongata_contig61239.13670.1|Name=mRNA_H-elongata_contig61239.13670.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2667bp|location=Sequence derived from alignment at H-elongata_contig61239:717..3383- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61239:717..3383- >mRNA_H-elongata_contig61239.13670.1 ID=mRNA_H-elongata_contig61239.13670.1|Name=mRNA_H-elongata_contig61239.13670.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig61239:717..3383- (Himanthalia elongata Himel1 dioecious)back to top |