mRNA_H-elongata_contig6116.13665.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6116.13665.1
Unique NamemRNA_H-elongata_contig6116.13665.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: D7FLB8_ECTSI (Non-ribosomal peptide synthetase modules n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLB8_ECTSI)

HSP 1 Score: 743 bits (1919), Expect = 2.500e-263
Identity = 415/537 (77.28%), Postives = 463/537 (86.22%), Query Frame = 1
Query:    1 MVFGLCLCLLVAGSKWLLVGRVRPGQSFNTHSFPHLCWWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQVADGRIVGALATAMHPTKRNSTSLAPPTPVIGVTIQVLVDLLSLYVVTITLGMAAFIGFRSFSFMLEKTHVYPDERMASQGYGPLADSDIALACYAAVFLLNRLYLPMLLVFAGVDVALSFSFLSDTVLREVGLFPVLLMAAASAVVFHLSHMVLSVCLKWLLVQRLSGVDGVCCTTSWLGVRKQVTDRLIMSAMMRSVLMFNGNLGNSLWLWALGGPVGRRVSVMLNKNIYTEAELLSLGDDMHVGFASSTYCSVYTAPDAFTLRKTFVGDRCLNGGG-------------ALGPNTRLAPTDSVRTEALHLGSPAPMVAGHYKSPPRELSSLECILYYCAPIPLAVMSTSITLSAAFWPLYGISLAARNLGGAGMTCFLTPLAWLGLGLSLAVTGA 1572
            M++GLCLCLLVA SKWLLVGRVRPG++FNTHS  HL WWT+QRLQSFSGLLF+DEIRRGRL+VWYYRLLGA+LGRDVFLNTVRISDPDLVTVGDGSTINEHA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   V +GR+VGALATA HPT+RNST LAPPTP  GV +QVL DL+SLY V + +G+AAF+GFRSFSFMLE  +V+P ERM++ GYGPL+ S +A ACYAAVFLLNRLYLP+LLVF G DVA+++SFL+DTVLR+VGL  VL +AA SAVVFH++HMVLSV LKW+LVQR S V+GVCCTTSWLG RKQ+TDRLIMSAMMRSVLMFNGNLGNSLWL ALGGPVGR VSVMLNKNIYTE ELL+LGDDMHVGFASSTYCS+YTAP++FTLRKTF+GDR LNG G             ALGPNTRL P+D VR  ALHLGSPAP+VAG Y SPPRELS LE  LY  AP+PLA  ST+ITLSAAFWPL  ++ AA  LGG G+ C LTPLAWLGLG+SLAVTGA
Sbjct:    1 MLYGLCLCLLVAASKWLLVGRVRPGETFNTHSVRHLLWWTIQRLQSFSGLLFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVGNGRVVGALATAAHPTRRNSTPLAPPTPFTGVFLQVLADLVSLYFVAVAVGLAAFVGFRSFSFMLEMANVFPGERMSALGYGPLSGSTMAFACYAAVFLLNRLYLPVLLVFGGADVAVAYSFLTDTVLRDVGLPRVLALAAVSAVVFHVTHMVLSVILKWVLVQRFSQVEGVCCTTSWLGFRKQITDRLIMSAMMRSVLMFNGNLGNSLWLMALGGPVGRCVSVMLNKNIYTEPELLTLGDDMHVGFASSTYCSIYTAPNSFTLRKTFIGDRGLNGAGSVTLPGATLPHGAALGPNTRLGPSDEVREGALHLGSPAPVVAGRYASPPRELSRLERWLYLLAPLPLAAASTAITLSAAFWPLLALARAAEALGGPGVACLLTPLAWLGLGVSLAVTGA 537          
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: W7U9S7_9STRA (Non-ribosomal peptide synthetase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.200e-22
Identity = 129/524 (24.62%), Postives = 219/524 (41.79%), Query Frame = 1
Query:   28 LVAGSKWLLVGRVRPGQSFNTHSFPHLCWWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQVADGRIVGALAT---------AMHPTKRNSTSLAPPTPVIGVTIQVLVDLLSLYVVTITLGMAA--FIGFRSFSFMLEKTHVYPDERMASQGYGPLADSDIALACYAAVFLLNRLYLPMLLVFAGVD-----VALSFSFLSDTVLREVGLFPVLLMAAASAVVFHLSHMVLSVCLKWLLVQRLS-GVDGVCCTTSWLGVRKQVTDRLIMSAMMRSVLMFNGNLGNSLWLWALGGPVGRRVSVMLNKNI------YTEAELLSLGDDMHVG----FASSTYCSVYTAPDAFTLRKTF----VGDRCLNGGGAL-------------GPNTRLAPTDSVRTEALHLGSPAPMVAGHYKSP---PRELSSLECILYYCAPIPLAVMSTSITLSAAFW 1458
            LV  SK L++G ++P + F   S   + +W V RL SF+ +L + E++R  L+  YYRL+G+R+GRDV ++TV I+DPD+V V DG+ I  +                                   EA+V     + ALA+         A+  T R+++S A  +       Q ++D         +LG     F+ +   S  L   +        SQ  G +      ++  A + L + LYLP L +F GVD       L  +     V+  + +FP   +   S V+  ++ +V     KWLL+ +   G       T+W    K   D L+  +   +  +  G    + WL  LG  +G R  + +   I      Y + EL+ +G D+HVG      +   C          +  T+    +GDR L G G++             G    +    S++  A+H+G+P P    H  +     R+ S++E + Y+  P+   ++ T++   A F+
Sbjct:  250 LVILSKKLILGNIKPNEHFPLASVKFVQYWAVTRLMSFANILVLGELKRTYLLNTYYRLMGSRIGRDVLIDTVGITDPDMVIVHDGTVIG-NGVLLLGHTIHDGFITFGTIAIGQSCTIEPRAILKPEARVDHFTTIPALASVGRNQMQFQAIGKTPRSASSDASGSHPAKSFWQAMLD---------SLGHVGGLFLTYALASSSLLVVNAIASAMSDSQSQGGI------MSALATLQLTSGLYLPFLPLFVGVDRDGFAEVLMMALTKYDVIGIIWIFPAFYLGY-SCVLIAVTALV-----KWLLIGKTKPGTSIDKGRTAWC---KWFCDTLLEYSFRHTASLTLGTSFINFWLSILGAKIGWRACIRVCNGIHDMPDSYRDPELIDVGKDVHVGDRAALITGVTCRATDGEKRGNVETTYGVIKIGDRALIGMGSVILEGARIPAGTGVGALCCVTSKVSLKEGAMHMGNPRPRPIYHISAEGLQDRKFSAMEWVWYFTFPLIQPLVITAVISVAGFF 748          
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: A0A4D9CX67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX67_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.270e-22
Identity = 128/522 (24.52%), Postives = 219/522 (41.95%), Query Frame = 1
Query:   28 LVAGSKWLLVGRVRPGQSFNTHSFPHLCWWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQVADGRIVGALAT---------AMHPTKRNSTSLAPPTPVIGVTIQVLVDLLSLYVVTITLGMAAFIGFRSFSFMLEKTHVYPDERMASQGYGPLADSDIALACYAAVFLLNRLYLPMLLVFAGVD-----VALSFSFLSDTVLREVGLFPVLLMAAASAVVFHLSHMVLSVCLKWLLVQRLS-GVDGVCCTTSWLGVRKQVTDRLIMSAMMRSVLMFNGNLGNSLWLWALGGPVGRRVSVMLNKNI------YTEAELLSLGDDMHVG----FASSTYCSVYTAPDAFTLRKTF----VGDRCLNGGGAL-------------GPNTRLAPTDSVRTEALHLGSPAPMVAGHYKSP---PRELSSLECILYYCAPIPLAVMSTSITLSAAFW 1458
            LV  SK L++G ++P + F   S   + +W V RL SF+ +L + E++R  L+  YYRL+G+R+GRDV ++TV I+DPD+V V DG+ I  +                                   EA+V     + ALA+         A+  T R+++S A          + ++D         +LG    +G    ++ L  + +     +AS      +   I ++  A + L + LYLP L +F GVD       L  +     V+  + +FP   +   S V+  ++ +V     KWLL+ +   G       T+W    K   D L+  +   +  +  G    + WL  LG  +G R  + +   I      Y + EL+ +G D+HVG      +   C          +  T+    +GDR L G G++             G    +   DS++  A+H+G+P P    H  +     R  S++E   Y+  P+   ++ T++   A F+
Sbjct: 5968 LVILSKKLILGNIKPNEHFPLASVKFVQYWAVTRLMSFANILVLGELKRTYLLNTYYRLMGSRIGRDVLIDTVGITDPDMVIVHDGTVIG-NGVLLLGHTIHDGFITFGTIAIGQSCTIEPRAILKPEARVDHFTTIPALASVGRNQMQFQAIGKTPRSASSDASGAHPAKSFWREMLD---------SLG---HVGGLFLTYALASSSLLVVNAIASAMSDSRSQGGI-MSALATLQLTSGLYLPFLPLFVGVDRDGFAEVLMMALTKYDVIGIIWIFPAFYLGY-SCVLIAVTALV-----KWLLIGKTKPGTSIDKGRTAWC---KWFCDTLLEYSFRHTASLTLGTSFINFWLSILGAKIGWRACIRVCNGIHDMPDSYRDPELIDVGKDVHVGDRAALITGVTCRATDGEKRGNVETTYGVIKIGDRALIGMGSVILEGARIPAGTGVGALCCVTSKDSLKEGAMHMGNPRPRPIYHISAEGLQDRNFSAMEWFWYFTFPLIQPLVITAVISVAGFF 6466          
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: I0YL01_COCSC (Carrier domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YL01_COCSC)

HSP 1 Score: 105 bits (261), Expect = 7.460e-20
Identity = 124/534 (23.22%), Postives = 214/534 (40.07%), Query Frame = 1
Query:  112 WWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQVADGRI-----------------------VGALATAMHPTKRNSTSLAP-------PTPVIGVTIQVLVDLLSLYVVTITLGMAAFIGFRSFSFMLEKTHVYPDERMASQGYGPLADSDIALACYAAVFLLNRLYLPMLLVFA----GVDVALSFSFLSDTVLREVGLFPVLLMAAASAVVFHLSHMVLSVCLKWLLVQRLSGVDGVCCTTSWLGVRKQVTDRLIMSAMMRSVLMFNGNLGNSLWLWALGGPVGRRVSVMLNKNIYTEAELLSLGDDMHVGFASSTYCSVYTAPDAFTLRKTFVGDRCLNG-------------GGALGPNTRLAPTDSVRTEALHLGSPAPMVAGHYKSP-PRELSSLECILYYCAPIPLAVMSTSITLSAAFWPLYGISLAARNLGGAGMTCFLTPLAWLGL-GLSLAVT 1566
            WW VQR+   + +LF D++R    +VW++R LGAR+GR+V+++++  SD DL+ +GD   INE A                                      A  ++                       +G  A A       +  LA            +   +  L+ L +LY++ I + + +++G+   + +L+   V       + G+          A    + L++ LYL +L V +    G   A+  +FL      + G+F  L    A  + + L+    ++ LKWLLVQ++    GV    SW+GVR   + R++ +A  R V    G    S+WL  LG  +G  V+     N+ T  ++L++GD  HVG  ++   S+     +  +    +G + + G             G  LG          + + AL +G PA   + H   P      + +  LY+  P  L  + T +  + A + +    +AA           L P  WLGL  LSL ++
Sbjct: 2638 WWLVQRMTGLTTVLFADQLRGTPFLVWWFRALGARIGRNVYIDSLDFSDFDLINIGDDVAINEGATLLGHYFKDGLLHFGEVIVEDRVRIEPYAAVQPGSRLEAGAQLKALRKSRSKLVAEKKDPLALMKALGQQAAAAKARAAGNAMLATRDLYAPLACTALHPCVASLLQLAALYLMGIVMVLCSYLGYTVTATILQGLGVGTGLTTYTPGF----------AAAGIIALMSPLYLAILPVISPELMGGAGAVYEAFLRAC--TKTGIFGFLAAFIAGFLAYGLALAAATILLKWLLVQQMHA--GVHKRHSWIGVRFWASQRMVENAFRRFVAYAQGTWLISVWLRCLGARIGNWVTFRFC-NVQTAPDMLNIGDGTHVGDMANMVSSLAIDSTSMLVAPIDIGKQVVFGVTAVIMPGTILGDGAVLGAIAAADIGQELGSNALFMGVPAISTSQHQTGPITTPKGAFQHALYWVLPA-LQPLVTLLVSALALFTIALTGVAALRFLPYVAPLLLLPALWLGLLALSLLIS 3155          
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: A0A8J9SI61_9CHLO (Probable fatty acid synthase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SI61_9CHLO)

HSP 1 Score: 102 bits (253), Expect = 7.250e-19
Identity = 129/539 (23.93%), Postives = 221/539 (41.00%), Query Frame = 1
Query:  112 WWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-----AQ-----------VADGRIVGALATAMHPTKRNSTSLAPPTPVIGVT---------------IQVLVDLLSLYVVTITLGMAAFIGFRSFSFMLEKTHVYPDERMASQGYGPLADSDIALACYAAVFLLNRLYLPMLLVFAGV---DVALSFSFLSDTVLREVGLFPVLLMAAASAVVFHLSHMVLSVCLKWLLVQRLSGVDGVCCTTSWLGVRKQVTDRLIMSAMMRSVLMFNGNLGNSLWLWALGGPVGRRVSVMLNKNIYTEAELLSLGDDMHVGFASSTYCSVYTAPDAFTLRKTFVGDRCLNG-------------GGALGPNTRLAPTDSVRTEALHLGSPAPMVAGHYKSP-PRELSSLECILYYCAPIPLAVMSTSITLSAAFWPLYGISLAA----RNLGGAGMTCFLTPLAWLGLGLSLAVTGA 1572
            WW VQR+   + +LF D++R    +VW++R LGAR+G +V++++V +SD DL+ +GD   INE A                                        AQ           VA+ +   AL  A+      + + A     +  T               I  ++ L +LY++ + + + A++G+   + +LE   +  +    + G+          A    + LL+ +YL +L V +       A  ++ L     +  G+F  L    A  +V+ L+  + ++ LKWL+VQ++    G     S +GVR   + RL+ +A  R V    G    S+WL  LG  +G  V+     N+ T  ++L++GD  HVG  ++   ++    D   +    +G + + G             G  LG          + + AL +G PA   + H   P      + +  LY+  P     +  +ITL  +   L+ I+LAA    R+L        L P  WLGL     +TGA
Sbjct: 2677 WWLVQRMTGLTTVLFADQLRGTPFLVWWFRALGARIGHNVYIDSVDLSDFDLINIGDDVAINEGATLLGHYFKDGLLHFGEVIVEDRVRIEPYAAVLPGSRLEAGAQLKTLRKSRSKLVAEKKDPMALMKALGQQAAAAKARAAGCGDVLKTRDLFAPLHDKAMHPCIASILQLATLYLMGVVMVLCAYLGYAVTATILEGLTLGQELTTYTPGF----------AAAGIIALLSPMYLAVLPVMSPALMGGAAAGYNALIRACTKT-GIFGFLAAFVAGFLVYGLALTIATILLKWLVVQQMRA--GTHKRHSLIGVRFWASQRLVENAFRRFVAYAQGTWLVSVWLRCLGAKIGSWVTFRFC-NVQTAPDMLNIGDGTHVGDMANMVSALAIDADTVMVAPIEIGKQVVFGVTAVIMPGTILGDGAVLGAIAAADIGQELGSNALFMGVPAIPTSRHTTGPITTPQGAFQYALYWVLP----ALQPAITLFVSALGLFIIALAATAALRHLPYVA-PLLLLPALWLGLLTFSLLTGA 3196          
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: I0YXM1_COCSC (Carrier domain-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YXM1_COCSC)

HSP 1 Score: 88.6 bits (218), Expect = 1.390e-14
Identity = 105/463 (22.68%), Postives = 178/463 (38.44%), Query Frame = 1
Query:   10 GLCLCLLVAGSKWLLVGRVRPGQSFNTHSFPHLCWWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQVADGRIVGALATAMHPTKRNS----------TSLAPPTPVIGVTIQVLVDLLSLYVVTITLGMAAFIGFRSFSFMLEKTHVYPDERMASQGYGPLADSDIALACYAAVFLLNRLYLPMLLVFAGVDVALSFSFLSDTVLREVGLFPVLLMAAASAVVFHLSHMVLSVCLKWLLVQRLSGVDGVCCTTSWLGVRKQVTDRLIMSAMMRSVLMFNGNLGNSLWLWALGGPVGRRVSVMLNKNIYTEAELLSLGDDMHVGFASSTYCSVYTAPDAFTLRKTFVGDRCLNGGGALG-PNTRLAPTDSVRT------------EALHLGSPA 1329
            G+ LCL    +  LL  ++   +     S     WW V RL   + ++F + +R    + W+YR LGAR+G+  +++++ + D DL+T+GD   +NE +                                     +  G  +G  AT     K+ +          T LA P      T  + V    L+ +     + A + +     +L           A+     +A    A A +A   L N LY   L +   +    ++S L  TVL  V     ++    S  VF  S    SV  KW +  ++S   GV    S LGVR     R++  A  R + + +G    +++L ALG  VG  VS  L   +    + +++ D +HVG  ++  C+     +        +    L G  A+  P T L  + ++              E L++G+PA
Sbjct: 2575 GVALCLACVATSRLLQPKLSANRPLPMFSLEFARWWLVSRLVHVTTIVFAEHLRGTPFLTWWYRALGARIGKGGYIDSLDVCDFDLITIGDNVVVNEGSTIIGHFFRDGQLHFSEIMIGDNCSLAPFSMAKAGTV-LPSGASIGPQATGPADPKKRAGKAPVLAALKTQLASPDLTAAQTAGLQVA--GLWAIGAVATVCAVVAYGILGTVLS----------AAGLSAHIALCPAAFAVFALAALFNPLYAATLPILLPIGAPAAWSALG-TVLSPVFAVAAIIAVPLSMTVFGASLAAASVLFKWQVAGKVS--PGVYRHQSVLGVRIWTASRMVELAFKRFMTLLSGTWAMNVYLRALGATVGDWVSFRLGMCLPLCPDQITIKDGVHVGDMANLVCTYAIDGERSVTAPVTLEAHSLIGAAAVALPGTTLGKSATLGAGAASLAGAQLPGEMLYMGNPA 3021          
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: A0A533WMW3_9ARCH (Carrier domain-containing protein (Fragment) n=1 Tax=Thaumarchaeota archaeon TaxID=2026795 RepID=A0A533WMW3_9ARCH)

HSP 1 Score: 76.6 bits (187), Expect = 4.370e-11
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    4 VFGLCLCLLVAGSKWLLVGRVRPGQSFNTHSFPHLCWWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHA 306
            VF L L + +A SKWL++GR+RPG+ +      HL WW VQ L S    L +D +    L+ + YRL GA++G+DV+L T  I+  DL T+G+G++I++ A
Sbjct:  289 VFPLLLAIAIA-SKWLILGRIRPGR-YPLWGRYHLRWWFVQTLVS---SLPLDYLAGTPLLPFIYRLFGAKIGKDVYLGTNNIASFDLTTIGNGTSIDDDA 384          
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: I0YNH2_COCSC (Carrier domain-containing protein n=3 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YNH2_COCSC)

HSP 1 Score: 77.0 bits (188), Expect = 5.960e-11
Identity = 101/474 (21.31%), Postives = 190/474 (40.08%), Query Frame = 1
Query:    7 FGLCLCLLVAGSKWLLVGRVRPGQSFNTHSFPHLCWWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQVADGRIVGALATAMH---PTKR--NSTSLAPPTPVIGVTIQVLVD--LLSLYVVTITLGMAAFIGFRSFSFMLEKTHVYPDERMASQGYGPLADSDIALACYAAVFLLNRLYLPMLLVFAGVDV-ALSFSFLSDTVLREVGLFPVLLMAAASAVVFHLSHMVLSVCLKWLLVQRLSGVDGVCCTTSWLGVRKQVTDRLIMSAMMRSVLMFNGNLGNSLWLWALGGPVGRRVSVMLNKNIYTEAELLSLGDDMHVGFASSTYCSVYTAPDAFTLRKTFVGDRCLNG-------------GGALGPNTRLAPTDSVRTEALHLGSPAPMVAGHYKSPPR 1365
            FGLC   ++  +K  +  R+ P       S     WW V R+   + ++F D++R   L+V + R +GA +G +V ++T+ ++D DL+++GD   I E A                                     +  G  + ALAT      P ++   S + A P P +  ++  +    +  +Y + +    A +    S  F++ +T  +   ++      P   S    A  A   +++ L++PML +    +  AL+      T L  V L PV      + V+F +      V +KW  + R     G     S  G+R  +  R +     R  +M  G    +++L A+G  + + V++    N+    ++L + + +H+G  ++   S+    D   + K  +G + + G             G  LG      P   +  + L+ G+PA  +   +KSP R
Sbjct: 2504 FGLCFACVL--TKRNIGPRLSPRHPIKMFSGDFARWWLVNRMVGVTTMIFADQLRGTGLLVSWLRAMGAHIGENVVIDTLDVTDFDLISIGDNVAIGEGATVMGHYYKGGFLHFDEVVIGDGCRLDPFSLAGPG-LTLLKGEQLPALATKPRKAAPVRKAKGSAAAAQPPPHMAESLTPIESPAVAGMYTIALVTAPAVY----SALFVIARTMAFLGLQL------PFMTSPAVFAVAALTAMVSPLFIPMLFLALPAEAGALAALLHPATALLFVPLVPV------AYVIFGVLLCAAMVAIKWAALGRAK--PGTHRRLSEYGLRFWLAQRAVEMGYKRFAIM--GTWAINVYLRAMGAKIAKEVNIRFG-NMMLTPDMLDIAEGVHIGDTANILTSMALDADRVLVGKVDIGQQAMLGLASVLCPATRVGKGVVLGGQASAEPGADLMAQMLYFGTPATAL---FKSPVR 2950          
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: A0A2V9JLU9_9BACT (Peptide synthetase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9JLU9_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 6.640e-11
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   19 LCLLVAGSKWLLVGRVRPGQSFNTHSFPHLCWWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHA 306
            L LLV G+KWL++GRVRPG+ +      +L WW VQ L S   +L +D +    L+   YRLLGAR+G+DV + T  ++  D++++GDG+ I++ A
Sbjct:   71 LLLLVVGAKWLVIGRVRPGR-YPLWGGYYLRWWLVQALVS---VLPLDYLAGTPLLPLVYRLLGARIGKDVHIATNHLAAFDVISIGDGACIDDGA 162          
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Match: I0YNH5_COCSC (Carrier domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YNH5_COCSC)

HSP 1 Score: 76.3 bits (186), Expect = 1.030e-10
Identity = 103/475 (21.68%), Postives = 187/475 (39.37%), Query Frame = 1
Query:    7 FGLCL-CLLVAGSKWLLVGRVRPGQSFNTHSFPHLCWWTVQRLQSFSGLLFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQVADGRIVGALATAMHPTK--RNSTSLAP-----PTPVIGVTIQVLVDLLSLYVVTITLGMAAFIGFRSFSFMLEKTHVYPDERMASQGYGPLADSDIALACYAAVFLLNRLYLPMLLVFAGVDV-ALSFSFLSDTVLREVGLFPVLLMAAASAVVFHLSHMVLSVCLKWLLVQRLSGVDGVCCTTSWLGVRKQVTDRLIMSAMMRSVLMFNGNLGNSLWLWALGGPVGRRVSVMLNKNIYTEAELLSLGDDMHVGFASSTYCSVYTAPDAFTLRKTFVGDRCLNG-------------GGALGPNTRLAPTDSVRTEALHLGSPAPMVAGHYKSPPR 1365
            FGLC  C+L  G   ++  R+ P       S     WW V R+   + ++F D++R   L+V + R +GA +G +V ++T+ ++D DL+++GD   I E A                                     +  G  + ALAT        R +  LA      P     +T+     +  +Y + +    A +    S  F++ +T  +   ++      P   S    A  A   +++ L++PML +    +  AL+      T L  V L PV      + V+F +      V +KW  + R     G     S  G+R  +  R +     R  +M  G    +++L A+G  + + V++    N+    ++L + + +H+G  ++   S+    D   + K  +G + + G             G  LG      P   +  + L+ G+PA  +   +KSP R
Sbjct: 2496 FGLCFACVLTKG---MIGPRLSPRHPIKMFSGDFARWWLVNRMVGVTTMIFADQLRSTGLLVSWLRAMGAHIGENVVIDTLDVTDFDLISIGDNVAIGEGATVMGHYFKGGFLHFDEVVIGDNCRLDPFSLAGPG-LTLLKGEQLPALATKPRKAAPVRKTKGLAAAAQQSPHMAEALTLVESPAVAGMYTIALVTAPAVY----SALFVIARTMAFLGLQL------PFMTSPAVYAVAALTAMVSPLFIPMLFLALPAEAGALAALLHPATALLFVPLVPV------AYVIFGVLLCAAMVAIKWAALGRAK--PGTHRRLSEYGLRFWLAQRAVEMGYKRFAIM--GTWAINVYLRAMGAKIAKEVNIRFG-NMMLTPDMLDIAEGVHIGDTANILTSMALDADRVLVGKVDIGQQAMLGLASVLCPATRVGKGVVLGGQASAEPGADLMAQMLYFGAPATAL---FKSPVR 2942          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6116.13665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLB8_ECTSI2.500e-26377.28Non-ribosomal peptide synthetase modules n=2 Tax=E... [more]
W7U9S7_9STRA2.200e-2224.62Non-ribosomal peptide synthetase (Fragment) n=1 Ta... [more]
A0A4D9CX67_9STRA8.270e-2224.52Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
I0YL01_COCSC7.460e-2023.22Carrier domain-containing protein n=1 Tax=Coccomyx... [more]
A0A8J9SI61_9CHLO7.250e-1923.93Probable fatty acid synthase n=1 Tax=Coccomyxa sp.... [more]
I0YXM1_COCSC1.390e-1422.68Carrier domain-containing protein n=2 Tax=Coccomyx... [more]
A0A533WMW3_9ARCH4.370e-1142.57Carrier domain-containing protein (Fragment) n=1 T... [more]
I0YNH2_COCSC5.960e-1121.31Carrier domain-containing protein n=3 Tax=Coccomyx... [more]
A0A2V9JLU9_9BACT6.640e-1142.71Peptide synthetase (Fragment) n=1 Tax=Acidobacteri... [more]
I0YNH5_COCSC1.030e-1021.68Carrier domain-containing protein n=1 Tax=Coccomyx... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6116contigH-elongata_contig6116:3719..8324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score104.4
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog248742.XP_005643614.1
EggNOG free text desc.Beta-ketoacyl synthase, C-terminal domain
EggNOG OGs34J4F@3041,388QH@33090,COG3321@1,KOG1202@2759
COG Functional cat.I
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-12_007540.1
Exons12
Model size1573
Cds size1572
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6116.13665.1prot_H-elongata_contig6116.13665.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6116 3719..8324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.24459-CDS-H-elongata_contig6116:3718..38131622930987.24459-CDS-H-elongata_contig6116:3718..3813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 3719..3813 +
1691679651.8936827-CDS-H-elongata_contig6116:3718..38131691679651.8936827-CDS-H-elongata_contig6116:3718..3813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 3719..3813 +
1622930987.2645504-CDS-H-elongata_contig6116:4161..43151622930987.2645504-CDS-H-elongata_contig6116:4161..4315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 4162..4315 +
1691679651.9035192-CDS-H-elongata_contig6116:4161..43151691679651.9035192-CDS-H-elongata_contig6116:4161..4315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 4162..4315 +
1622930987.283189-CDS-H-elongata_contig6116:4640..47151622930987.283189-CDS-H-elongata_contig6116:4640..4715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 4641..4715 +
1691679651.9114861-CDS-H-elongata_contig6116:4640..47151691679651.9114861-CDS-H-elongata_contig6116:4640..4715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 4641..4715 +
1622930987.3003623-CDS-H-elongata_contig6116:4850..50051622930987.3003623-CDS-H-elongata_contig6116:4850..5005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 4851..5005 +
1691679651.9223495-CDS-H-elongata_contig6116:4850..50051691679651.9223495-CDS-H-elongata_contig6116:4850..5005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 4851..5005 +
1622930987.3207703-CDS-H-elongata_contig6116:5356..54021622930987.3207703-CDS-H-elongata_contig6116:5356..5402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 5357..5402 +
1691679651.930434-CDS-H-elongata_contig6116:5356..54021691679651.930434-CDS-H-elongata_contig6116:5356..5402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 5357..5402 +
1622930987.3376675-CDS-H-elongata_contig6116:5731..58431622930987.3376675-CDS-H-elongata_contig6116:5731..5843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 5732..5843 +
1691679651.9387522-CDS-H-elongata_contig6116:5731..58431691679651.9387522-CDS-H-elongata_contig6116:5731..5843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 5732..5843 +
1622930987.3561614-CDS-H-elongata_contig6116:6189..63891622930987.3561614-CDS-H-elongata_contig6116:6189..6389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 6190..6389 +
1691679651.949447-CDS-H-elongata_contig6116:6189..63891691679651.949447-CDS-H-elongata_contig6116:6189..6389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 6190..6389 +
1622930987.3752441-CDS-H-elongata_contig6116:6825..69601622930987.3752441-CDS-H-elongata_contig6116:6825..6960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 6826..6960 +
1691679651.9594991-CDS-H-elongata_contig6116:6825..69601691679651.9594991-CDS-H-elongata_contig6116:6825..6960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 6826..6960 +
1622930987.3923688-CDS-H-elongata_contig6116:7273..74201622930987.3923688-CDS-H-elongata_contig6116:7273..7420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 7274..7420 +
1691679651.9694328-CDS-H-elongata_contig6116:7273..74201691679651.9694328-CDS-H-elongata_contig6116:7273..7420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 7274..7420 +
1622930987.449432-CDS-H-elongata_contig6116:7572..76881622930987.449432-CDS-H-elongata_contig6116:7572..7688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 7573..7688 +
1691679651.9794686-CDS-H-elongata_contig6116:7572..76881691679651.9794686-CDS-H-elongata_contig6116:7572..7688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 7573..7688 +
1622930987.468316-CDS-H-elongata_contig6116:7948..79611622930987.468316-CDS-H-elongata_contig6116:7948..7961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 7949..7961 +
1691679651.9893458-CDS-H-elongata_contig6116:7948..79611691679651.9893458-CDS-H-elongata_contig6116:7948..7961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 7949..7961 +
1622930987.4844823-CDS-H-elongata_contig6116:8000..83241622930987.4844823-CDS-H-elongata_contig6116:8000..8324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 8001..8324 +
1691679651.999635-CDS-H-elongata_contig6116:8000..83241691679651.999635-CDS-H-elongata_contig6116:8000..8324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 8001..8324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6116.13665.1

>prot_H-elongata_contig6116.13665.1 ID=prot_H-elongata_contig6116.13665.1|Name=mRNA_H-elongata_contig6116.13665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=524bp
MVFGLCLCLLVAGSKWLLVGRVRPGQSFNTHSFPHLCWWTVQRLQSFSGL
LFIDEIRRGRLIVWYYRLLGARLGRDVFLNTVRISDPDLVTVGDGSTINE
HADLSGHQIIGNRVLFGSGVSIGAGTVLLPSAYMAPEAQVADGRIVGALA
TAMHPTKRNSTSLAPPTPVIGVTIQVLVDLLSLYVVTITLGMAAFIGFRS
FSFMLEKTHVYPDERMASQGYGPLADSDIALACYAAVFLLNRLYLPMLLV
FAGVDVALSFSFLSDTVLREVGLFPVLLMAAASAVVFHLSHMVLSVCLKW
LLVQRLSGVDGVCCTTSWLGVRKQVTDRLIMSAMMRSVLMFNGNLGNSLW
LWALGGPVGRRVSVMLNKNIYTEAELLSLGDDMHVGFASSTYCSVYTAPD
AFTLRKTFVGDRCLNGGGALGPNTRLAPTDSVRTEALHLGSPAPMVAGHY
KSPPRELSSLECILYYCAPIPLAVMSTSITLSAAFWPLYGISLAARNLGG
AGMTCFLTPLAWLGLGLSLAVTGA
back to top

mRNA from alignment at H-elongata_contig6116:3719..8324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6116.13665.1 ID=mRNA_H-elongata_contig6116.13665.1|Name=mRNA_H-elongata_contig6116.13665.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4606bp|location=Sequence derived from alignment at H-elongata_contig6116:3719..8324+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTTCGGGCTGTGTCTGTGCCTGCTCGTGGCCGGTAGTAAGTGGCT GCTCGTGGGAAGAGTGCGACCAGGCCAATCGTTCAACACACACAGGTATG ATTGGAGGCGTTTCGAAGGAACAGAGAGTACACGGGGAGGTGGGGGAGCG AGGGTCAACTTTCATCCCTGCACGATTTTCATTTTTCGTTGTGCAACCGA TTGATCATGTGTTAGATATATGGTTATCTGCAACACTTCATTGTCGTCAC GCGTCGAGATAAAAGAGAGGCCTACAGCCGGAGGAAATGCCGCCGCACTA AATACCAGCCTCTAAAGGTTCGACTCCCACGAGTTCAATCCATGCCCAAC CCGTTGTTTTCTGTGCCTAAATCTCTTTCTTTCTCGCCGCACTGCTTCCC GGCGCCCACGCGCTTGTCTAACGACGGGCTCGAAACGGACCAGCTTTCCG CACCTTTGCTGGTGGACCGTCCAGAGACTTCAGAGCTTCTCGGGGCTGCT CTTCATCGACGAGATCCGCCGCGGGCGACTGATCGTGTGGTACTACCGCC TCCTAGGGGCGCGCCTCGGAAGAGACGTCTTCCTCAACACTGTCAGGGTG CGCTGTAGCCGCAAATGGGTTTACATGTATCCAGCGCCGTACCGTAAGAC GTGAAACGCGGGACGGGCGATGGGTTCATGCTTCGTGCTGGGGAGGTCTT TTTGAGTGGAGATTTATTGAAAGTATCCGTTTTAAATCTCACATCGGCCT TCGGGCGTTCGGAGGTAAAAGTCGTGCAACTATGTAATAAGTAGGAGACA AGTTTTGAATTTTGTTTGTTACACGTCACTCTTAGCTCCACGAATTGCTT CGCTCGCGCTCTAGTTACAAATACATTTTTGTATCACCGGCACACGGCTC GTCCCAAATAACCTAACGGCAGATTTCGGATCCAGATCTGGTCACCGTTG GAGATGGGAGCACCATCAACGAACACGCAGACCTCAGCGGCCACCAGGTG CGATGTCAATGTCGATGCCGCGCCACCCGAATAATCTTCCTGGGGCGGCC ATATGAAATTTCAAGATACGTCAGCCACCGACATCTTCTGCGTGTGTTGC CTTTTTAACTCTTGATACCGCTCGAACCACAGATCATAGGCAATCGCGTT TTGTTCGGTTCGGGAGTCAGCATCGGTGCCGGCACCGTGCTGCTGCCGAG CGCCTACATGGCCCCAGAGGCTCAAGTTGCAGACGGGAGGATTGTGGGCG CTCTGGCTACCGCCATGCACCCCACAAAGCGGAACAGGTACGGCTCTCCT CCCTTTGGAAATTGAGCCTAACGGCGTGCTGTTTTGCCTATTCTTGCAGG TGGAACGCTGCCTACCCTTGACCCGATGTACCGTGTTTTATTTTTCTTTC CATCGTTCGCCTCCCAAAAATATCCCCTCGTTTTTTAGGGGATGACATTG CTGCGCGTGTGTCGTTGGCTTGTCTCAAGATTCAACCAGACATTAAACTG GGATGCAGAGCGAAGTGCGACGAAAACGTTGGGAATGAGCAAATTTGGTG CATGTACCCAAGTTTTGGGTATAAACCTACTTCCTTTCAACAACTTTTTT CGCCCCGTTCGCTTCCCCCCACGTCCACCAAATACCAGCACATCGCTCGC CCCTCCCACTCCGGTGATTGGAGTGACAATTCAGGTGGGGAAGTCTCGTC TGGTGTTTGATCTCTGTTGATGTCTTACTTCGGAATTTATCGTTAACTCC AACCACGAAATGCAGCTACTTGGTTGACTCGATTCCTCGACCTGGAGAGT ATTGACAGGGGGCTCTCTTGAATATCTGAGCGCCGCGATAGCTGGAAAAA GCATGTCTTGACACTTGTAGCTCGTTCGGCGGAGGCCGTACGCCGACGTC GTTTGCGTGCACCTTGCGATTACGCGAACGTGGCTGTCTGGTTGTGTATC TTCGATTTTAACTTCCTGTTTTGCTTCGTTTTTCCATGCACCCCCTCACA CATTTTACCGTAGGTGCTGGTGGACTTGTTGAGTTTGTACGTGGTGACCA TAACGCTCGGCATGGCCGCCTTCATAGGATTCCGATCCTTTTCATTCATG CTCGAGAAAACGCACGTCTACCCAGGTAAGGATGAAAAATATTACTGTAG CAGATATCACGGCGCGTGCTGTGACGTTTGAAAATATGGTGCTACCCGCA CCGAAAATCGCTTTACCCGCGTTTGCCGTCACATGAGCGTCACCGACGCG CCCTTACATTTTCGAGAACATCCCGAAGTGTATCGCTTAATGTACAGGAG CCACTGTTTTACAGGTAATATCAGAGCATGATAACTGACTCTTCACAAAC CATGTCATTCGCACACCAACGACGAACGGCGTATTACATCCAAGCGTTCA AAACATCAAACTATACGCGAAGTTTGTTACGCTCCATGTGCGTGTGCCCC TACACGCCTCCTGGAGCGCAGACGAGCGAATGGCATCACAGGGCTACGGG CCGCTGGCGGACAGCGACATCGCTCTGGCTTGCTACGCGGCTGTGTTTCT CCTGAACCGCTTGTACCTGCCGATGCTTCTTGTCTTCGCCGGGGTGGACG TTGCGTTGTCGTTCTCCTTCCTGAGCGACACAGTACTCCGGGAGGTTGGC TTGTTCCCCGTGCTACTCATGGTGAGCGCTCGAAACGGGGATCGATCGTT GTGGTTGATAATGAACGTGCACCAGGAAAAAAACGTATATTGTAAGTGAC GGAGCTACGCCACCCCATCGGAGATGGTTAACGAGTAAAGAAAACCTTAC CGGATTTGAGAAGATCTCGCGCAATAGGGTTTCCTAGCTTCCGGCGTCTT TGCCATCAATATTTCGACAGAAGGGTAAGAATGTAGGACATTCCCGGGAT TTGCGATACATGAAAAATCGTGCACGCTGTCACCTACGGTATGCTCAGCT CAGGTGGAGGGGCGATATCGTTTGTGGCTAGACCTCTACGCTTGGCTTGT GCTTGCATTGACTTCGTAATCGCTTCCTCCCGCACTCTCGTCTCGCCTTT TGACCGCCGAATGCTTATTGTCCCCCACCCTTGGGTTTGGTCGGTCTTGA CACACAGGCGGCGGCTTCCGCGGTGGTATTTCACCTGTCTCATATGGTAC TGTCGGTGTGCCTCAAGTGGCTGCTGGTCCAGAGGCTCTCCGGGGTGGAT GGCGTGTGTTGCACAACTTCATGGCTCGGCGTTCGTAAGCAGGTGATTTC GCGATGCATGCGGTCCAATCCTTCAGGGGGAATGACCACGATGCAAGCAT CGGTGATGGATTGATTCAAAAGCTGTCACCCATTCCTTGTTTGCTCTGAA CCGCGGCTGTACAAAGCGCAGCTACTCGTAGAGTACCATGAAGAATTTTA CGAGCTCTCCAGAAATTTCGGATGAGCCTCGCGTCGAACCCTTTCATAGT CGGCTTTTGGCTTTCGAGAGTTTTCTGACTCGGTGGTTATTCATGGGGCG ACCAAACCGCTTCCAGTATACCGACACACCTACCTGCCTCGACGTTCCCG TTCAGGTTACTGACCGACTGATCATGTCAGCCATGATGCGCTCGGTTCTA ATGTTCAACGGTAACCTTGGCAACTCTCTGTGGCTCTGGGCTCTCGGAGG ACCGGTGGGGCGCCGAGTTAGTGTGATGCTCAACAAGAACATCTACACCG AGGTGTGCATACACGCCAGTGTCTTGTTGCCCCTTTTCGCTGCGATCAAT CTGATCTATCCCTTCCTGAGAGAGCGATGTAACGGTATCCAGCAGATTCC GTCAATCTCGGTCATTGTCTCTGGCTGTACGGTGCTGAATGTGAAATTTT CCAGGCGGAGCTGCTTTCCCTCGGCGACGATATGCACGTTGGTTTTGCGT CCAGCACGTACTGCAGCGTCTACACAGCGCCGGACGCCTTCACGCTTAGG AAAACCTTTGTCGGCGACCGGCAAGCCGTTTCGCTTTCTCTTACGCGCTC GACTAGCCATTCGCTGTCTACCACGCGATAGAGATTGCGACTACCGCCGC CATCCTATTGGCGAGCTGTTTTTTACCACACTTTTCTTGAAATAGTCTTT AAACGTTGTTATAAACACTGTGTAAACCACCGCTTTGCTTCCTGGTGTTC GTTTGAGCCTGAGGCGGCACAATTCCTATCCAACCACGGCCCACACTCGA AACTCGTCGCGTTCGGCGCCACCAATCCAGGTGCCTGAACGGAGCGGGGT CGGTAATGTTACCAGGAGCTACTCTTCCCGAGGGTGGTGCTCTGGGTCCA AACACGCGTCTGGCCCCAACAGACTCAGTGAGGACGGAAGCGCTTCACCT TGGATCCCCCGCGCCGATGGTGGCGGGTCACTACAAGTCCCCCCCACGCG AGCTGTCGTCGCTTGAGTGCATCCTGTACTATTGTGCTCCGATTCCTCTG GCCGTCATGTCGACGAGCATCACGCTCAGCGCGGCGTTTTGGCCCCTCTA CGGGATTTCTCTAGCGGCGCGCAACTTGGGAGGGGCGGGAATGACGTGCT TCTTGACCCCCCTGGCATGGCTCGGGCTCGGGCTTTCCCTCGCTGTGACC GGGGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6116:3719..8324+

>mRNA_H-elongata_contig6116.13665.1 ID=mRNA_H-elongata_contig6116.13665.1|Name=mRNA_H-elongata_contig6116.13665.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3144bp|location=Sequence derived from alignment at H-elongata_contig6116:3719..8324+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTTCGGGCTGTGTCTGTGCCTGCTCGTGGCCGGTAGTAAGTGGCT
GCTCGTGGGAAGAGTGCGACCAGGCCAATCGTTCAACACACACAGATGGT
GTTCGGGCTGTGTCTGTGCCTGCTCGTGGCCGGTAGTAAGTGGCTGCTCG
TGGGAAGAGTGCGACCAGGCCAATCGTTCAACACACACAGCTTTCCGCAC
CTTTGCTGGTGGACCGTCCAGAGACTTCAGAGCTTCTCGGGGCTGCTCTT
CATCGACGAGATCCGCCGCGGGCGACTGATCGTGTGGTACTACCGCCTCC
TAGGGGCGCGCCTCGGAAGAGACGTCTTCCTCAACACTGTCAGGCTTTCC
GCACCTTTGCTGGTGGACCGTCCAGAGACTTCAGAGCTTCTCGGGGCTGC
TCTTCATCGACGAGATCCGCCGCGGGCGACTGATCGTGTGGTACTACCGC
CTCCTAGGGGCGCGCCTCGGAAGAGACGTCTTCCTCAACACTGTCAGGAT
TTCGGATCCAGATCTGGTCACCGTTGGAGATGGGAGCACCATCAACGAAC
ACGCAGACCTCAGCGGCCACCAGATTTCGGATCCAGATCTGGTCACCGTT
GGAGATGGGAGCACCATCAACGAACACGCAGACCTCAGCGGCCACCAGAT
CATAGGCAATCGCGTTTTGTTCGGTTCGGGAGTCAGCATCGGTGCCGGCA
CCGTGCTGCTGCCGAGCGCCTACATGGCCCCAGAGGCTCAAGTTGCAGAC
GGGAGGATTGTGGGCGCTCTGGCTACCGCCATGCACCCCACAAAGCGGAA
CAGATCATAGGCAATCGCGTTTTGTTCGGTTCGGGAGTCAGCATCGGTGC
CGGCACCGTGCTGCTGCCGAGCGCCTACATGGCCCCAGAGGCTCAAGTTG
CAGACGGGAGGATTGTGGGCGCTCTGGCTACCGCCATGCACCCCACAAAG
CGGAACAGCACATCGCTCGCCCCTCCCACTCCGGTGATTGGAGTGACAAT
TCAGCACATCGCTCGCCCCTCCCACTCCGGTGATTGGAGTGACAATTCAG
GTGCTGGTGGACTTGTTGAGTTTGTACGTGGTGACCATAACGCTCGGCAT
GGCCGCCTTCATAGGATTCCGATCCTTTTCATTCATGCTCGAGAAAACGC
ACGTCTACCCAGGTGCTGGTGGACTTGTTGAGTTTGTACGTGGTGACCAT
AACGCTCGGCATGGCCGCCTTCATAGGATTCCGATCCTTTTCATTCATGC
TCGAGAAAACGCACGTCTACCCAGACGAGCGAATGGCATCACAGGGCTAC
GGGCCGCTGGCGGACAGCGACATCGCTCTGGCTTGCTACGCGGCTGTGTT
TCTCCTGAACCGCTTGTACCTGCCGATGCTTCTTGTCTTCGCCGGGGTGG
ACGTTGCGTTGTCGTTCTCCTTCCTGAGCGACACAGTACTCCGGGAGGTT
GGCTTGTTCCCCGTGCTACTCATGACGAGCGAATGGCATCACAGGGCTAC
GGGCCGCTGGCGGACAGCGACATCGCTCTGGCTTGCTACGCGGCTGTGTT
TCTCCTGAACCGCTTGTACCTGCCGATGCTTCTTGTCTTCGCCGGGGTGG
ACGTTGCGTTGTCGTTCTCCTTCCTGAGCGACACAGTACTCCGGGAGGTT
GGCTTGTTCCCCGTGCTACTCATGGCGGCGGCTTCCGCGGTGGTATTTCA
CCTGTCTCATATGGTACTGTCGGTGTGCCTCAAGTGGCTGCTGGTCCAGA
GGCTCTCCGGGGTGGATGGCGTGTGTTGCACAACTTCATGGCTCGGCGTT
CGTAAGCAGGCGGCGGCTTCCGCGGTGGTATTTCACCTGTCTCATATGGT
ACTGTCGGTGTGCCTCAAGTGGCTGCTGGTCCAGAGGCTCTCCGGGGTGG
ATGGCGTGTGTTGCACAACTTCATGGCTCGGCGTTCGTAAGCAGGTTACT
GACCGACTGATCATGTCAGCCATGATGCGCTCGGTTCTAATGTTCAACGG
TAACCTTGGCAACTCTCTGTGGCTCTGGGCTCTCGGAGGACCGGTGGGGC
GCCGAGTTAGTGTGATGCTCAACAAGAACATCTACACCGAGGTTACTGAC
CGACTGATCATGTCAGCCATGATGCGCTCGGTTCTAATGTTCAACGGTAA
CCTTGGCAACTCTCTGTGGCTCTGGGCTCTCGGAGGACCGGTGGGGCGCC
GAGTTAGTGTGATGCTCAACAAGAACATCTACACCGAGGCGGAGCTGCTT
TCCCTCGGCGACGATATGCACGTTGGTTTTGCGTCCAGCACGTACTGCAG
CGTCTACACAGCGCCGGACGCCTTCACGCTTAGGAAAACCTTTGTCGGCG
ACCGGCGGAGCTGCTTTCCCTCGGCGACGATATGCACGTTGGTTTTGCGT
CCAGCACGTACTGCAGCGTCTACACAGCGCCGGACGCCTTCACGCTTAGG
AAAACCTTTGTCGGCGACCGGTGCCTGAACGGAGTGCCTGAACGGAGGTG
GTGCTCTGGGTCCAAACACGCGTCTGGCCCCAACAGACTCAGTGAGGACG
GAAGCGCTTCACCTTGGATCCCCCGCGCCGATGGTGGCGGGTCACTACAA
GTCCCCCCCACGCGAGCTGTCGTCGCTTGAGTGCATCCTGTACTATTGTG
CTCCGATTCCTCTGGCCGTCATGTCGACGAGCATCACGCTCAGCGCGGCG
TTTTGGCCCCTCTACGGGATTTCTCTAGCGGCGCGCAACTTGGGAGGGGC
GGGAATGACGTGCTTCTTGACCCCCCTGGCATGGCTCGGGCTCGGGCTTT
CCCTCGCTGTGACCGGGGCGGGTGGTGCTCTGGGTCCAAACACGCGTCTG
GCCCCAACAGACTCAGTGAGGACGGAAGCGCTTCACCTTGGATCCCCCGC
GCCGATGGTGGCGGGTCACTACAAGTCCCCCCCACGCGAGCTGTCGTCGC
TTGAGTGCATCCTGTACTATTGTGCTCCGATTCCTCTGGCCGTCATGTCG
ACGAGCATCACGCTCAGCGCGGCGTTTTGGCCCCTCTACGGGATTTCTCT
AGCGGCGCGCAACTTGGGAGGGGCGGGAATGACGTGCTTCTTGACCCCCC
TGGCATGGCTCGGGCTCGGGCTTTCCCTCGCTGTGACCGGGGCG
back to top