mRNA_H-elongata_contig61159.13663.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: D7FH01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH01_ECTSI) HSP 1 Score: 334 bits (857), Expect = 3.190e-107 Identity = 165/198 (83.33%), Postives = 177/198 (89.39%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGTPNLSVYEGSVEDVLLDGDSVRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDSAHVEPPSVGLAETLERFQFPLGRLKTGTPPRLDGNTINWGESIAEES 594
GELSCNPSIGGIGKGH+VREVDALDGVMGRVIDRAGIHFR+LNRRKGPAVRGPRAQADRDLYRTAMQ + M GTPNLSV+EGSVEDVLL+G++++GIVTADGTEI CKGVV+TTGTFLRGKCYIGQ EWYWAGRHLRDSAHVEPPSVGLAETLERF+FPLGRLKTGTPPRLDGNTINWG A+ S
Sbjct: 41 GELSCNPSIGGIGKGHIVREVDALDGVMGRVIDRAGIHFRMLNRRKGPAVRGPRAQADRDLYRTAMQEE-------MHGTPNLSVFEGSVEDVLLEGEAIKGIVTADGTEIACKGVVITTGTFLRGKCYIGQ-------EWYWAGRHLRDSAHVEPPSVGLAETLERFKFPLGRLKTGTPPRLDGNTINWGILEAQPS 224
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: A0A835YS09_9STRA (Glucose inhibited division protein A-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS09_9STRA) HSP 1 Score: 291 bits (745), Expect = 1.060e-91 Identity = 142/191 (74.35%), Postives = 156/191 (81.68%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGTPNLSVYEGSVEDVLLDGDSVRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDSAHVEPPSVGLAETLERFQFPLGRLKTGTPPRLDGNTINWG 573
GELSCNPSIGGIGKGHLVREVDALDG+MGRVID AGIHFR+LN+RKGPAVRGPRAQADRD+YR+ MQ + PNL + EGS ED+LLDGD+VRG+V ADG EI + VV+TTGTFLRGKCYIG WYWAGRHLRDSA EPPSVGLAETLERF FPL RLKTGTPPR+DGNTI+WG
Sbjct: 44 GELSCNPSIGGIGKGHLVREVDALDGLMGRVIDEAGIHFRMLNQRKGPAVRGPRAQADRDIYRSTMQAF-------LQQQPNLEIMEGSAEDLLLDGDAVRGVVCADGAEIAARAVVITTGTFLRGKCYIGD-------RWYWAGRHLRDSAETEPPSVGLAETLERFAFPLARLKTGTPPRIDGNTIDWG 220
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: A0A0G4ES60_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ES60_VITBC) HSP 1 Score: 256 bits (653), Expect = 1.420e-77 Identity = 134/198 (67.68%), Postives = 150/198 (75.76%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGTPNLSVYEGSVEDVLLDGDSVRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDSAHVEPPSVGLAETLERFQFPLGRLKTGTPPRLDGNTINWGESIAEES 594
GE+SCNPSIGGIGKGHLVRE+DALDG+MG IDRAGIHFRLLNR KGPAVRGPRAQADRDLY+ AMQ + PNL + E SVEDVLLDG +VRG+ DG +I VVVTTGTFLRGKC+IG+ + Y AGRHLRDS VEPPSVGLA+TL+R F LGRLKTGTPPRLDG TI+W A+ S
Sbjct: 83 GEMSCNPSIGGIGKGHLVREIDALDGLMGVTIDRAGIHFRLLNRSKGPAVRGPRAQADRDLYKEAMQAT-------LSAYPNLRIVEASVEDVLLDGGAVRGVRLGDGRDIEGGRVVVTTGTFLRGKCWIGR-------QGYSAGRHLRDSEAVEPPSVGLAQTLDRMGFQLGRLKTGTPPRLDGRTIDWERLEAQPS 266
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: A0A6V1QVZ8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QVZ8_HETAK) HSP 1 Score: 253 bits (645), Expect = 1.480e-76 Identity = 130/191 (68.06%), Postives = 146/191 (76.44%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGTPNLSVYEGSVEDVLLD-GDSVRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDSAHVEPPSVGLAETLERFQFPLGRLKTGTPPRLDGNTINW 570
GELSCNPSIGGIGKGHLV+E+DALDG+MGRVID AGIHFR+LNRRKG AVRGPRAQADRDLY+ AMQ + TPNL + E S ED++L G+ V G+VTA+G I VV+TTGTFLRG CY+G+ R Y AGRHLRDS VEPPSVGLA TLER PLGRLKTGTPPRLDG TI+W
Sbjct: 92 GELSCNPSIGGIGKGHLVKEIDALDGLMGRVIDEAGIHFRMLNRRKGQAVRGPRAQADRDLYKAAMQA-------ALAATPNLRIVEASAEDLVLGAGNRVEGVVTAEGARIAAGQVVITTGTFLRGVCYLGRER-------YQAGRHLRDSEAVEPPSVGLALTLERLGLPLGRLKTGTPPRLDGRTIDW 268
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: A0A7S2SR14_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR14_9STRA) HSP 1 Score: 249 bits (635), Expect = 1.830e-75 Identity = 130/200 (65.00%), Postives = 155/200 (77.50%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGTPNLSVYEGSVEDVLLDGDSVRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDS---AHVEPPSVGLAETLERFQFPLGRLKTGTPPRLDGNTINWGESIAEE 591
GELSCNPSIGGIGKGHLVREVDALDG+MGR ID + IHFR+LNRRKGPAV GPR+QADR LY+ AMQ + + T NL V+EGSVED+LL+G+ V GIVT G EIL VV+TTGTFLRG+CY+G+ + Y AGRH+R+S +EPPS+GLA TLER +FPLGRLKTGTPPRL G+TI+W ES+A +
Sbjct: 29 GELSCNPSIGGIGKGHLVREVDALDGLMGRTIDESSIHFRMLNRRKGPAVWGPRSQADRTLYKAAMQRN-------IEATANLEVFEGSVEDLLLEGERVTGIVTGAGDEILAGRVVITTGTFLRGRCYLGK-------KVYAAGRHIRESDDPEEIEPPSIGLALTLERLEFPLGRLKTGTPPRLAGSTIDW-ESLASQ 213
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: A0A7S0D5Y6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D5Y6_9EUKA) HSP 1 Score: 245 bits (626), Expect = 3.760e-74 Identity = 125/195 (64.10%), Postives = 148/195 (75.90%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGTPNLSVYEGSVEDVLLD-----GDSVRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDSAHVEPPSVGLAETLERFQFPLGRLKTGTPPRLDGNTINW 570
GE+SCNPSIGGIGKGH+V+E+DALDGVMGR+ID AGIHFR+LN RKGPAV GPRAQADRDLY++AMQ + + +L V EGS D++ D V GI+T DG +IL VV+TTGTFLRGKCY+G+ E Y AGRHLRDSA VEPPSVGLA++LE+ QF +GRLKTGTPPR+DG TINW
Sbjct: 126 GEMSCNPSIGGIGKGHIVKEIDALDGVMGRMIDEAGIHFRMLNMRKGPAVHGPRAQADRDLYKSAMQSE-------ISAYDSLRVVEGSAFDLIFDDPDAPSPKVMGILTEDGRKILSPNVVITTGTFLRGKCYLGK-------EVYSAGRHLRDSAEVEPPSVGLAKSLEKLQFKMGRLKTGTPPRIDGRTINW 306
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: A0A7R9Y936_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y936_9STRA) HSP 1 Score: 238 bits (608), Expect = 6.650e-71 Identity = 126/195 (64.62%), Postives = 142/195 (72.82%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGTPNLSVYEGSVEDVLLDGDS-----VRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDSAHVEPPSVGLAETLERFQFPLGRLKTGTPPRLDGNTINW 570
GE+SCNPSIGGIGKGHLVRE+DAL GVMG ID A +HFR+LNRRKGPAV GPR QADRDLY+ A+Q + PNL YE SVED+LLD S VRG+ DG+EILC VV+TTGTFLRGKC++G + Y AGRHLRDS VEPP+V LA TLER F L RLKTGTPPRLDGNTI+W
Sbjct: 99 GEMSCNPSIGGIGKGHLVREIDALGGVMGEAIDHACVHFRMLNRRKGPAVWGPRGQADRDLYKAAVQ-------RLLQEKPNLWSYEASVEDILLDEASGAKPVVRGVRCDDGSEILCGAVVITTGTFLRGKCFVGP-------QGYSAGRHLRDSTEVEPPAVALALTLERLGFSLNRLKTGTPPRLDGNTIDW 279
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: A0A482SH14_9ARCH (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SH14_9ARCH) HSP 1 Score: 236 bits (601), Expect = 1.150e-70 Identity = 121/193 (62.69%), Postives = 145/193 (75.13%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGT-PNLSVYEGSVEDVLLDGD--SVRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDSAHVEPPSVGLAETLERFQFPLGRLKTGTPPRLDGNTINW 570
GE+SCNPSIGGIGKGHLVRE+DALDG+MGR+ID AGIH+++LN RKGPAVRGPRAQADRDLY+ MQ +L T PNL V E S ED++L + +V G+ T G E+L VV+TTGTFLRGKCY+G+ + AGRH+R S +EPPS+GLA TLER FPLGRLKTGTPPRL+G TI+W
Sbjct: 43 GEMSCNPSIGGIGKGHLVREIDALDGIMGRIIDDAGIHYKMLNIRKGPAVRGPRAQADRDLYKAEMQ--------SLLKTYPNLEVVEASAEDLILTNNMKTVTGVKTQSGQELLALSVVITTGTFLRGKCYLGKTVMA-------AGRHMRSSEDLEPPSIGLALTLERLLFPLGRLKTGTPPRLNGKTIDW 220
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: W7T6E4_9STRA (Glucose-inhibited division protein a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6E4_9STRA) HSP 1 Score: 238 bits (607), Expect = 1.460e-70 Identity = 124/205 (60.49%), Postives = 153/205 (74.63%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGTPNLSVYEGSVEDVLLD---GDS-----------VRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDSAHVEPPSVGLAETLE-RFQFPLGRLKTGTPPRLDGNTINW 570
GE+SCNPS+GGIGKGHLVRE+DALDG+MGR+ID+AGIHF++LN RKGPAVRGPRAQADRD YRTAM+ + + TPNL+++EGSVED++LD G S VRGI TA G + VV+TTGTFL+GKCY+G+ + Y AGRHLR+S +E PS+GL+ TLE + + PLGRLKTGTPPRLDG TI+W
Sbjct: 126 GEMSCNPSVGGIGKGHLVREIDALDGIMGRMIDQAGIHFKILNSRKGPAVRGPRAQADRDRYRTAMRQE-------LAATPNLTLFEGSVEDLVLDEAVGGSGAGGVGGKQMNVRGITTAAGETLSASRVVITTGTFLKGKCYLGK-------QTYAAGRHLRNSQELEAPSIGLSVTLEEKLRLPLGRLKTGTPPRLDGRTIDW 316
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Match: A0A7S3Z977_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z977_9EUKA) HSP 1 Score: 235 bits (600), Expect = 5.420e-70 Identity = 118/195 (60.51%), Postives = 143/195 (73.33%), Query Frame = 1
Query: 1 GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVRGPRAQADRDLYRTAMQVDGIRGEGGMLGTPNLSVYEGSVEDVLLDGDS-----VRGIVTADGTEILCKGVVVTTGTFLRGKCYIGQARESDALEWYWAGRHLRDSAHVEPPSVGLAETLERFQFPLGRLKTGTPPRLDGNTINW 570
GE+SCNPSIGGIGKGH+VRE+DAL GVMG+ ID AGIHFR+LN RKGPAV GPRAQADRDLY+ M M P L V EGS D++LD ++G++T DGTEI+ V+VTTGTFLRG+C++G E Y AGRHLRDSA VEPPS+GLA++LE+ + +GRLKTGTPPR+DG TI+W
Sbjct: 122 GEMSCNPSIGGIGKGHIVREIDALGGVMGKAIDDAGIHFRMLNMRKGPAVHGPRAQADRDLYKKEMS-------SMMESYPGLRVVEGSAFDIILDDPESPNPVLKGVLTQDGTEIIASKVIVTTGTFLRGRCFLGS-------EVYSAGRHLRDSAEVEPPSIGLAQSLEKLELNMGRLKTGTPPRIDGRTIDW 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61159.13663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61159.13663.1 >prot_H-elongata_contig61159.13663.1 ID=prot_H-elongata_contig61159.13663.1|Name=mRNA_H-elongata_contig61159.13663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp GELSCNPSIGGIGKGHLVREVDALDGVMGRVIDRAGIHFRLLNRRKGPAVback to top mRNA from alignment at H-elongata_contig61159:1887..3234+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61159.13663.1 ID=mRNA_H-elongata_contig61159.13663.1|Name=mRNA_H-elongata_contig61159.13663.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1348bp|location=Sequence derived from alignment at H-elongata_contig61159:1887..3234+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61159:1887..3234+ >mRNA_H-elongata_contig61159.13663.1 ID=mRNA_H-elongata_contig61159.13663.1|Name=mRNA_H-elongata_contig61159.13663.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig61159:1887..3234+ (Himanthalia elongata Himel1 dioecious)back to top |