mRNA_H-elongata_contig6114.13660.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6114.13660.1
Unique NamemRNA_H-elongata_contig6114.13660.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6114.13660.1 vs. uniprot
Match: D7FZK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 3.240e-17
Identity = 57/107 (53.27%), Postives = 68/107 (63.55%), Query Frame = 2 
Query:  875 GPGDEAPTEPDMDDSSFAQECDRDVGAVDAVHQADGG-KGSSTKELLRVCGLCRVRGAILVLVEWNVVDAVGATCQELSFMLSSTLKIEWPQQYIAYLEEKLVFRSE 1192
            G GDE  T  + +D +         GA D     D G KG   KELLRV GLCR++G++L LVEW+VVD  GA   ELSF+LSSTLK EWP+QYI YLE K+VF  E
Sbjct:  549 GSGDEGCTYFEYEDPATG-------GAQDDGRPEDNGPKGGPQKELLRVRGLCRMQGSVLALVEWSVVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEE 648
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BLAST of mRNA_H-elongata_contig6114.13660.1 vs. uniprot
Match: A0A6H5KZ06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ06_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.780e-16
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:  959 DAVHQADGGKGSSTKELLRVCGLCRVRGAILVLVEWNVVDAVGATCQELSFMLSSTLKIEWPQQYIAYLEEKLVFRSED 1195
            D  H+ +  KG+  K+LLRV GLCR++G++L LVEW++VD  GA   ELSF+LSSTLK EWP+QYI YLE K+VF  E+
Sbjct:  576 DRRHKDNDPKGAPQKKLLRVRGLCRMQGSVLALVEWSMVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEEE 654
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6114.13660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZK8_ECTSI3.240e-1753.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ06_9PHAE1.780e-1658.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6114contigH-elongata_contig6114:605..4129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010060.1
Exons6
Model size1678
Cds size1227
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6114.13660.1prot_H-elongata_contig6114.13660.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6114 660..3733 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930986.4546845-UTR-H-elongata_contig6114:604..6591622930986.4546845-UTR-H-elongata_contig6114:604..659Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6114 605..659 +
1691679651.6576834-UTR-H-elongata_contig6114:604..6591691679651.6576834-UTR-H-elongata_contig6114:604..659Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6114 605..659 +
1622930986.7666342-UTR-H-elongata_contig6114:3733..41291622930986.7666342-UTR-H-elongata_contig6114:3733..4129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6114 3734..4129 +
1691679651.753138-UTR-H-elongata_contig6114:3733..41291691679651.753138-UTR-H-elongata_contig6114:3733..4129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6114 3734..4129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930986.4728317-CDS-H-elongata_contig6114:659..6741622930986.4728317-CDS-H-elongata_contig6114:659..674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 660..674 +
1691679651.670697-CDS-H-elongata_contig6114:659..6741691679651.670697-CDS-H-elongata_contig6114:659..674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 660..674 +
1622930986.4878774-CDS-H-elongata_contig6114:1400..15401622930986.4878774-CDS-H-elongata_contig6114:1400..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 1401..1540 +
1691679651.690558-CDS-H-elongata_contig6114:1400..15401691679651.690558-CDS-H-elongata_contig6114:1400..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 1401..1540 +
1622930986.5940719-CDS-H-elongata_contig6114:1754..18151622930986.5940719-CDS-H-elongata_contig6114:1754..1815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 1755..1815 +
1691679651.7075386-CDS-H-elongata_contig6114:1754..18151691679651.7075386-CDS-H-elongata_contig6114:1754..1815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 1755..1815 +
1622930986.6934648-CDS-H-elongata_contig6114:2111..27711622930986.6934648-CDS-H-elongata_contig6114:2111..2771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 2112..2771 +
1691679651.7183685-CDS-H-elongata_contig6114:2111..27711691679651.7183685-CDS-H-elongata_contig6114:2111..2771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 2112..2771 +
1622930986.7154002-CDS-H-elongata_contig6114:3150..32841622930986.7154002-CDS-H-elongata_contig6114:3150..3284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 3151..3284 +
1691679651.7316668-CDS-H-elongata_contig6114:3150..32841691679651.7316668-CDS-H-elongata_contig6114:3150..3284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 3151..3284 +
1622930986.7468047-CDS-H-elongata_contig6114:3516..37331622930986.7468047-CDS-H-elongata_contig6114:3516..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 3517..3733 +
1691679651.7403827-CDS-H-elongata_contig6114:3516..37331691679651.7403827-CDS-H-elongata_contig6114:3516..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6114 3517..3733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6114.13660.1

>prot_H-elongata_contig6114.13660.1 ID=prot_H-elongata_contig6114.13660.1|Name=mRNA_H-elongata_contig6114.13660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=409bp
MEDTPLGPEGTARGGRARGSGVVPIGTTRRRQKVASLVELLQELSVPHQR
RSSTARGWTGATSDMQGIDQQNALDQQRPRQESVGPAPTLSGPSRTIAHR
DISSNDEKNGRRSGADRETQGTGCYFGTILDNTSEHASSVGAFAGSGSQS
CPAISPEAVYVGGVRGGTNSPKERSVRRRRLDGGHRDIVRALESREDKNQ
WLTQVDSRTSSIWKQQYYGGDSAQRKTEKSVPQGRRIQAIGENRGRRPAQ
QDRPDVVPIGLQRTNGIVVDADTGPGDEAPTEPDMDDSSFAQECDRDVGA
VDAVHQADGGKGSSTKELLRVCGLCRVRGAILVLVEWNVVDAVGATCQEL
SFMLSSTLKIEWPQQYIAYLEEKLVFRSEDDVEESQRLRSTTDTEDGAGT
DHVANDAR*
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mRNA from alignment at H-elongata_contig6114:605..4129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6114.13660.1 ID=mRNA_H-elongata_contig6114.13660.1|Name=mRNA_H-elongata_contig6114.13660.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3525bp|location=Sequence derived from alignment at H-elongata_contig6114:605..4129+ (Himanthalia elongata Himel1 dioecious)
GATATCTTCCGATATAGTCAAAGGTGAGGGAGCCACCTCCACTTCATTCG
ACTTCATGGAGGACACGCCGGTGAGAAACCTGGCCGAGGCTTTCCCCCTT
TTTATCAGTTATTATTCGAGCACGTAAAGGAGCGCCACGCGGGTTGGCAA
ATACATCCCCCCCCTTGAGGGGAGATATCGCTGAAGATGTTGGATTGGCC
TATCCTACTCGCGTTGCTTACGCATTGGACGGACTACCGTAACAACTTAC
CCTCATGCCCCCACTGTCCCACCTCTGGGCGCAACAACCCAGCCAGGGCG
TTGGTGTTTCGAATACCGCTACGGCCCCACCCCTCTCTATCCCCAGCTCG
GTTGATGCCTCCATCCTATTTCGAATCTGGCGGATTCTCGTCGCTTGCGG
GACGGCCATCATCGCTACTACTACTGCCGTTACCAGCGCCGCCGCATTCG
CCACTCTGGCGGCGAGTACTCGTGCCTCGATCCCTTCCACCCCCTCCCCC
AACGCTACGGCGTTGGTGACCAGCGTATCACCCCCTCAATTCCTACAACC
TGCATTGTCGTGACAGCGGCCGTTAGTTCCGACATCGTGGTCACTGCAAC
CACGCCCGCGCCAGCCCCTGCATGTTCCTGTTTAGAAGACACAAATGCAT
GACCCCCCCCCCTCCTCCTCGGGATGGTCTTTACATTTAAAGTGTATCAT
CTAGAACCAGCTTTTGGTCAACGGCATGCCTTTGTTTTGACGTCACCTAC
TGTGTAGCGCCTCAAAACATGCTGCCTTTACCGTCTGCCTACTCAGTTGG
GCCCTGAAGGCACCGCGAGAGGAGGCCGGGCCCGCGGCTCTGGTGTTGTG
CCCATAGGCACCACCCGGCGTCGTCAAAAGGTGGCTTCGCTTGTGGAGCT
TCTCCAGGAGCTTTCCGTGCCACACCAGCGTCGGAGGCAAGTATCGAAAA
CATCGCTAGCCCATATAAATGACGGAGGAATATTATTTGAAGGTCTGGTT
GCTCCCGTTGAATGAATTCCTTCGACCCAAAGCCAGTGCGATCAAGTGCA
GCTGTGGTACAGCAGCATCATTATTAATACAAACTAGTGCCAGACAGGGA
AGAGAATACGTGTCCCATACAATTTCATTTCTCTCCACCATCCGTAACAG
CTCCACCGCGCGTGGTTGGACTGGCGCGACTTCCGATATGCAAGGGATCG
ATCAACAAAATGTAAGCCGTCTCGGAGCGCCGACCGCCGTGGTCGATTGG
AAACCCCGAAATCCGTACCAGGAGGAACTGTCACGCTGGCTCGGACTTTG
TAATGAAAAATACGGAGTACTTTGACGCACACGCCTTCGTCGACTGGTCA
CACAGTGTCAGCAGAAATATTCATTGTCCACGGAGCCATTCACCAGCTGC
CATATCTCTAATCGGTATATTGTTATCGTCCATCAGCTATATCGTCGTCA
ATCAGCTGCTATATATCAAATCACAGCTACTTATTTGTTTCTGTTCCGCC
TCTGCAGGCTCTCGATCAGCAACGACCCCGGCAGGAAAGTGTCGGACCTG
CGCCGACGCTCTCTGGCCCAAGCCGAACTATTGCCCACCGCGACATCTCC
AGCAACGATGAAAAAAATGGTCGAAGGAGCGGGGCGGATAGAGAAACACA
GGGGACGGGATGTTATTTTGGCACCATTCTTGATAATACGAGCGAACATG
CGAGCTCTGTGGGAGCGTTTGCGGGGTCGGGGTCCCAATCCTGCCCGGCG
ATTTCGCCGGAAGCGGTGTATGTCGGTGGAGTACGAGGGGGTACAAATAG
CCCTAAGGAAAGATCGGTGAGGCGAAGGCGCCTAGATGGGGGACATAGAG
ACATCGTCCGAGCACTCGAATCGAGAGAAGACAAAAACCAATGGCTGACC
CAGGTTGACTCCAGGACATCAAGCATATGGAAGCAGCAATATTATGGAGG
GGACAGTGCCCAACGGAAGACAGAGAAGTCTGTGCCTCAAGGTCGTCGAA
TACAAGCGATAGGAGAGAACCGAGGGCGGAGACCCGCTCAGCAAGATAGA
CCTGATGTGGTACCGATTGGGCTACAGCGCACCAACGGTATCGTCGTTGA
CGCTGACACCGGACCGGGCGATGAAGCACCGACGGAGCCGGACATGGATG
ACTCGAGCTTCGCTCAGGTTTGTGAGAAATAAATCCTCCGTAACGGTCGA
GTTTGAATGCATCGAGACGAAGCACTCATGGTTTCAATTCTGGCAAGAGG
TGAATTGTTGGTGACCTGGAGCCTCTTATGGACCGAAGTATTTTCTTTGA
CGCGAGTGCAAGGTGGTCCTTACTATCGTCTCTTATTTTATTTTATCCCT
CCAATCTATTTCCCTCGAATGCGTTGGGGTGTTTTCATGCGTCCATCCTT
AGTCGTCATTCCATGCTTTCACGCGTCGGGTGTTTTCACATGAAAATTTT
GATCGATTGGTGATTTACGTTCTCCCCGTGCACGTTTTTATAGACATGAT
ATATCCTCCTCTGCAGTACGATCTCGATTTTACTCGCGTTGGGCAGGAAT
GCGACAGAGATGTTGGCGCTGTAGATGCGGTCCATCAAGCCGACGGTGGC
AAAGGTTCTTCAACAAAGGAGCTCCTGAGAGTGTGCGGGCTCTGTCGAGT
GAGGGGTGCCATCCTCGTCCTTGTAGAGTGGTGAGTTGGTGCGAGAACTT
GTACTATAGACTATGAAACTACAGCCGACGTAAATCCTTTACCGAGTCGC
TAAGGAGATATCAGTATATGACTATTAATACTAATAATATATAATTAATA
GAGTGCCTTCTAATTATTTGCATAGTAATCACTTCGGTCTGGCAGCTTTC
AGGAAAGGGAAACCCTAGAAAGCCTAACGGTATCGATTGCTTCGGGTCAA
ACCATGCGACAGGAACGTCGTTGACGCCGTCGGTGCGACTTGCCAAGAGC
TAAGCTTCATGCTCAGCTCCACCCTCAAGATCGAGTGGCCACAGCAGTAT
ATCGCCTACCTGGAGGAGAAACTAGTTTTCAGGTCGGAAGATGATGTTGA
GGAAAGCCAACGGCTGAGGAGCACGACAGATACTGAAGATGGAGCGGGGA
CCGATCACGTTGCTAATGACGCCCGTTGAACGTACATCGACAGCAGGTGT
CAAACGAAACGAAGACTTCGGACATATGTACTGTGTAGTGCGTTTGATCT
CCCGATTTTCAGATTTTGACGCCTCAATACCGCAGTCAAGGTACTCTCGA
GATAATTGAAAAAAAAAGGCATTTTCTGTAATGGTGAGCGTGTTTGCGTC
TCTTCGAACCATCGTTGATATGATTACGTAGCCCTTTCATTGAAATAGTT
GTATTCATTCAATCCCAAAAGTTTCTGCTCGCTTCGGTCCATTTTTTAGC
CGCGTTGCAAACGTTTCGTAGTCTTTTAGTACGATAAATGTATTCCGTTT
GCAAAGTAAGGATGAAAGCTTCAAAAATTGGGTCCCATCAGTCTTAGAAC
ACCGGGTGCCAGACATAAGACGATA
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Coding sequence (CDS) from alignment at H-elongata_contig6114:605..4129+

>mRNA_H-elongata_contig6114.13660.1 ID=mRNA_H-elongata_contig6114.13660.1|Name=mRNA_H-elongata_contig6114.13660.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2454bp|location=Sequence derived from alignment at H-elongata_contig6114:605..4129+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGACACGCCGATGGAGGACACGCCGTTGGGCCCTGAAGGCACCGC
GAGAGGAGGCCGGGCCCGCGGCTCTGGTGTTGTGCCCATAGGCACCACCC
GGCGTCGTCAAAAGGTGGCTTCGCTTGTGGAGCTTCTCCAGGAGCTTTCC
GTGCCACACCAGCGTCGGAGTTGGGCCCTGAAGGCACCGCGAGAGGAGGC
CGGGCCCGCGGCTCTGGTGTTGTGCCCATAGGCACCACCCGGCGTCGTCA
AAAGGTGGCTTCGCTTGTGGAGCTTCTCCAGGAGCTTTCCGTGCCACACC
AGCGTCGGAGCTCCACCGCGCGTGGTTGGACTGGCGCGACTTCCGATATG
CAAGGGATCGATCAACAAAATCTCCACCGCGCGTGGTTGGACTGGCGCGA
CTTCCGATATGCAAGGGATCGATCAACAAAATGCTCTCGATCAGCAACGA
CCCCGGCAGGAAAGTGTCGGACCTGCGCCGACGCTCTCTGGCCCAAGCCG
AACTATTGCCCACCGCGACATCTCCAGCAACGATGAAAAAAATGGTCGAA
GGAGCGGGGCGGATAGAGAAACACAGGGGACGGGATGTTATTTTGGCACC
ATTCTTGATAATACGAGCGAACATGCGAGCTCTGTGGGAGCGTTTGCGGG
GTCGGGGTCCCAATCCTGCCCGGCGATTTCGCCGGAAGCGGTGTATGTCG
GTGGAGTACGAGGGGGTACAAATAGCCCTAAGGAAAGATCGGTGAGGCGA
AGGCGCCTAGATGGGGGACATAGAGACATCGTCCGAGCACTCGAATCGAG
AGAAGACAAAAACCAATGGCTGACCCAGGTTGACTCCAGGACATCAAGCA
TATGGAAGCAGCAATATTATGGAGGGGACAGTGCCCAACGGAAGACAGAG
AAGTCTGTGCCTCAAGGTCGTCGAATACAAGCGATAGGAGAGAACCGAGG
GCGGAGACCCGCTCAGCAAGATAGACCTGATGTGGTACCGATTGGGCTAC
AGCGCACCAACGGTATCGTCGTTGACGCTGACACCGGACCGGGCGATGAA
GCACCGACGGAGCCGGACATGGATGACTCGAGCTTCGCTCAGGCTCTCGA
TCAGCAACGACCCCGGCAGGAAAGTGTCGGACCTGCGCCGACGCTCTCTG
GCCCAAGCCGAACTATTGCCCACCGCGACATCTCCAGCAACGATGAAAAA
AATGGTCGAAGGAGCGGGGCGGATAGAGAAACACAGGGGACGGGATGTTA
TTTTGGCACCATTCTTGATAATACGAGCGAACATGCGAGCTCTGTGGGAG
CGTTTGCGGGGTCGGGGTCCCAATCCTGCCCGGCGATTTCGCCGGAAGCG
GTGTATGTCGGTGGAGTACGAGGGGGTACAAATAGCCCTAAGGAAAGATC
GGTGAGGCGAAGGCGCCTAGATGGGGGACATAGAGACATCGTCCGAGCAC
TCGAATCGAGAGAAGACAAAAACCAATGGCTGACCCAGGTTGACTCCAGG
ACATCAAGCATATGGAAGCAGCAATATTATGGAGGGGACAGTGCCCAACG
GAAGACAGAGAAGTCTGTGCCTCAAGGTCGTCGAATACAAGCGATAGGAG
AGAACCGAGGGCGGAGACCCGCTCAGCAAGATAGACCTGATGTGGTACCG
ATTGGGCTACAGCGCACCAACGGTATCGTCGTTGACGCTGACACCGGACC
GGGCGATGAAGCACCGACGGAGCCGGACATGGATGACTCGAGCTTCGCTC
AGGAATGCGACAGAGATGTTGGCGCTGTAGATGCGGTCCATCAAGCCGAC
GGTGGCAAAGGTTCTTCAACAAAGGAGCTCCTGAGAGTGTGCGGGCTCTG
TCGAGTGAGGGGTGCCATCCTCGTCCTTGTAGAGTGGAATGCGACAGAGA
TGTTGGCGCTGTAGATGCGGTCCATCAAGCCGACGGTGGCAAAGGTTCTT
CAACAAAGGAGCTCCTGAGAGTGTGCGGGCTCTGTCGAGTGAGGGGTGCC
ATCCTCGTCCTTGTAGAGTGGAACGTCGTTGACGCCGTCGGTGCGACTTG
CCAAGAGCTAAGCTTCATGCTCAGCTCCACCCTCAAGATCGAGTGGCCAC
AGCAGTATATCGCCTACCTGGAGGAGAAACTAGTTTTCAGGTCGGAAGAT
GATGTTGAGGAAAGCCAACGGCTGAGGAGCACGACAGATACTGAAGATGG
AGCGGGGACCGATCACGTTGCTAATGACGCCCGTTGAGAACGTCGTTGAC
GCCGTCGGTGCGACTTGCCAAGAGCTAAGCTTCATGCTCAGCTCCACCCT
CAAGATCGAGTGGCCACAGCAGTATATCGCCTACCTGGAGGAGAAACTAG
TTTTCAGGTCGGAAGATGATGTTGAGGAAAGCCAACGGCTGAGGAGCACG
ACAGATACTGAAGATGGAGCGGGGACCGATCACGTTGCTAATGACGCCCG
TTGA
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