mRNA_H-elongata_contig61071.13654.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61071.13654.1
Unique NamemRNA_H-elongata_contig61071.13654.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig61071.13654.1 vs. uniprot
Match: A0A6H5KXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.730e-12
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 GVSAVAIERAAAEKAFGTLSKNLGRVSTPAFETLLASLGVPAERRKGAATESARAAGLLSAYSFTRKDFIEW 216
            G + V  ER AAE+AF ++ +N GRVS    E LL  LG+PA +R   ATESARAAGLLSA SF+ ++F++W
Sbjct:   39 GSAEVLEERLAAERAFSSMDQNSGRVSARRLEELLTLLGMPAAQRGAKATESARAAGLLSAPSFSCQEFVDW 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61071.13654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXR2_9PHAE1.730e-1254.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61071contigH-elongata_contig61071:3102..3320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_010370.1
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.7482874-CDS-H-elongata_contig61071:3101..33201622930985.7482874-CDS-H-elongata_contig61071:3101..3320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61071 3102..3320 +
1691679651.3396523-CDS-H-elongata_contig61071:3101..33201691679651.3396523-CDS-H-elongata_contig61071:3101..3320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61071 3102..3320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61071.13654.1prot_H-elongata_contig61071.13654.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61071 3102..3320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61071.13654.1

>prot_H-elongata_contig61071.13654.1 ID=prot_H-elongata_contig61071.13654.1|Name=mRNA_H-elongata_contig61071.13654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
GVSAVAIERAAAEKAFGTLSKNLGRVSTPAFETLLASLGVPAERRKGAAT
ESARAAGLLSAYSFTRKDFIEW*
back to top

mRNA from alignment at H-elongata_contig61071:3102..3320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61071.13654.1 ID=mRNA_H-elongata_contig61071.13654.1|Name=mRNA_H-elongata_contig61071.13654.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig61071:3102..3320+ (Himanthalia elongata Himel1 dioecious)
GGCGTTTCGGCAGTGGCCATCGAACGAGCGGCGGCGGAGAAGGCCTTCGG
TACTCTGTCCAAGAATTTGGGCAGGGTTTCTACGCCTGCTTTTGAAACGC
TGCTGGCGTCTCTTGGGGTTCCAGCGGAGCGTCGTAAAGGAGCCGCCACG
GAATCCGCACGAGCGGCGGGTCTCTTGAGTGCGTACTCATTCACGCGCAA
GGATTTCATAGAGTGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61071:3102..3320+

>mRNA_H-elongata_contig61071.13654.1 ID=mRNA_H-elongata_contig61071.13654.1|Name=mRNA_H-elongata_contig61071.13654.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig61071:3102..3320+ (Himanthalia elongata Himel1 dioecious)
GGCGTTTCGGCAGTGGCCATCGAACGAGCGGCGGCGGAGAAGGCCTTCGG
TACTCTGTCCAAGAATTTGGGCAGGGTTTCTACGCCTGCTTTTGAAACGC
TGCTGGCGTCTCTTGGGGTTCCAGCGGAGCGTCGTAAAGGAGCCGCCACG
GAATCCGCACGAGCGGCGGGTCTCTTGAGTGCGTACTCATTCACGCGCAA
GGATTTCATAGAGTGGTAAGGCGTTTCGGCAGTGGCCATCGAACGAGCGG
CGGCGGAGAAGGCCTTCGGTACTCTGTCCAAGAATTTGGGCAGGGTTTCT
ACGCCTGCTTTTGAAACGCTGCTGGCGTCTCTTGGGGTTCCAGCGGAGCG
TCGTAAAGGAGCCGCCACGGAATCCGCACGAGCGGCGGGTCTCTTGAGTG
CGTACTCATTCACGCGCAAGGATTTCATAGAGTGGTAA
back to top