mRNA_H-elongata_contig61022.13650.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61022.13650.1
Unique NamemRNA_H-elongata_contig61022.13650.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 7.910e-31
Identity = 76/185 (41.08%), Postives = 106/185 (57.30%), Query Frame = 1 
Query:   10 AKYECDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            A  +CD IG+QETRR G+  I     GYV+  SG   G + K G  GVG+A +E++  ++          S RL+KV +        TF+VGY P ETA          K  F   L + I EV + DHL+++MDANARTG R +G      +++G YGRD +NNNG RLL  AA+++LS++NT+
Sbjct:    8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY 188
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.210e-30
Identity = 75/181 (41.44%), Postives = 107/181 (59.12%), Query Frame = 1 
Query:   22 CDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            CD IG+QETRR+G+ +I     GYV   SG   G +GK G  GVG+A +E++ +++  +       S RL+KV +        TF+VGY P ET  T        K  F   L + I EV + DHL+++MDANARTG R +G      +++G YGRD +NNNG RLL  A++++LS+ NT+
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTY 188
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.550e-29
Identity = 75/181 (41.44%), Postives = 104/181 (57.46%), Query Frame = 1 
Query:   22 CDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            CD IG+QETRR+G+ +I     GYV+  SG   G + K G  GVG+A +E++  ++  +       S RL+KV +        TF+VGY P ET  T        K  F   L + I EV + DHL+++MDANARTG R   GG    +VLG YGRD +NNNG RL   A++++ S+ NT+
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTY 188
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.090e-28
Identity = 74/181 (40.88%), Postives = 106/181 (58.56%), Query Frame = 1 
Query:   22 CDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            CD IG+QETRR+G+ +I     GYV+  SG   G + K G  GVG+A +E++  ++  +       S RL+KV +        TF+VGY P ET  T        K  F   L + I EV + DHL+++MDANARTG R +G      +++G YGRD +NNNG RLL  A++++LS+ NT+
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTY 188
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.800e-28
Identity = 74/181 (40.88%), Postives = 103/181 (56.91%), Query Frame = 1 
Query:   22 CDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            CD IG+QETRR+G+ +I     GYV+  SG   G + K G  GVG A +E++  ++  +       S RL+KV +        TF+VGY P ET  T        K  F   L + I EV + DHL+++MDANARTG R  G   G  +++G YGRD + NNG RLL  A++ +LS+ NT+
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRVGCCDG--KMMGAYGRDIMTNNGERLLGLASDSQLSLTNTY 188
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.090e-28
Identity = 76/185 (41.08%), Postives = 106/185 (57.30%), Query Frame = 1 
Query:   10 AKYECDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            A  +CD IG+QETRR G+  I     GYV+  SG   G + K G  GVG+A +E++  ++          S RL+KV +        TF+VGY P ETA          K  F   L + I EV + DHL+++MDANARTG R +G      +++G YGRD +NNNG RLL  AA+++LS++NT+
Sbjct:    8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY 188
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.110e-28
Identity = 76/185 (41.08%), Postives = 106/185 (57.30%), Query Frame = 1 
Query:   10 AKYECDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            A  +CD IG+QETRR G+  I     GYV+  SG   G + K G  GVG+A +E++  ++          S RL+KV +        TF+VGY P ETA          K  F   L + I EV + DHL+++MDANARTG R +G      +++G YGRD +NNNG RLL  AA+++LS++NT+
Sbjct:  120 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY 300
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.730e-28
Identity = 74/181 (40.88%), Postives = 105/181 (58.01%), Query Frame = 1 
Query:   22 CDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            CD IG+QETRR G+ +I     GYV+  SG   G + K G  GVG+A +E++  ++  +       S RL+KV +        TF+VGY P ET  T        K  F   L + I EV + DHL+++MDANARTG R +G      +++G YGRD +NNNG RLL  A++++LS+ NT+
Sbjct:  209 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTY 385
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.760e-28
Identity = 73/181 (40.33%), Postives = 104/181 (57.46%), Query Frame = 1 
Query:   22 CDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            CD IG+QETRR+G+ +I     GYV+  SG   G + K G  GVG+A +E++   +  +       S RL+KV +        TF+VGY P ET           K  F   L + I EV + DHL+++MDANARTG R +G      +++G YGRD +NNNG RLL  A++++LS+ NT+
Sbjct:  189 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTY 365
[Close]
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.100e-28
Identity = 73/181 (40.33%), Postives = 104/181 (57.46%), Query Frame = 1 
Query:   22 CDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLGVGLAFRESIARALCPDXXXXHT-SARLLKVGVIFKHRAVTTFIVGYTPAETAATCH------KSKF*KELRSTIAEVPASDHLILMMDANARTGGRGEGGGLGGLRVLGPYGRDTLNNNGLRLLACAAEHKLSIVNTF 543
            CD I +QETRR+G+ +I     GYV+  SG   G + K G  GVG+A +E++  ++  +       S RL+K  +        TF+VGY P ET  T        K  F   L + I EV + DHL+++MDANARTG R EG      +++G YGRD +NNNG RLL  A++++LS+ NT+
Sbjct:   12 CDVIELQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTGRRREG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTY 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61022.13650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP87_9PHAE7.910e-3141.08Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KQ63_9PHAE7.210e-3041.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE1.550e-2941.44Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L7A7_9PHAE1.090e-2840.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMM5_9PHAE1.800e-2840.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KC90_9PHAE2.090e-2841.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE2.110e-2841.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K3Q1_9PHAE2.730e-2840.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVN7_9PHAE2.760e-2840.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUT2_9PHAE3.100e-2840.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61022contigH-elongata_contig61022:3045..3587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Exons1
Model size543
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.387875-CDS-H-elongata_contig61022:3044..33741622930985.387875-CDS-H-elongata_contig61022:3044..3374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61022 3045..3374 +
1691679651.2142859-CDS-H-elongata_contig61022:3044..33741691679651.2142859-CDS-H-elongata_contig61022:3044..3374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61022 3045..3374 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.4055548-UTR-H-elongata_contig61022:3374..35871622930985.4055548-UTR-H-elongata_contig61022:3374..3587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61022 3375..3587 +
1691679651.222379-UTR-H-elongata_contig61022:3374..35871691679651.222379-UTR-H-elongata_contig61022:3374..3587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61022 3375..3587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61022.13650.1prot_H-elongata_contig61022.13650.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61022 3045..3374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61022.13650.1

>prot_H-elongata_contig61022.13650.1 ID=prot_H-elongata_contig61022.13650.1|Name=mRNA_H-elongata_contig61022.13650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MFTAKYECDFIGIQETRRDGRTTIQAPAAGYVVHCSGHCDGDRGKPGRLG
VGLAFRESIARALCPDXXXXHTSARLLKVGVIFKHRAVTTFIVGYTPAET
AATCHKSKF*
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mRNA from alignment at H-elongata_contig61022:3045..3587+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61022.13650.1 ID=mRNA_H-elongata_contig61022.13650.1|Name=mRNA_H-elongata_contig61022.13650.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig61022:3045..3587+ (Himanthalia elongata Himel1 dioecious)
ATGTTCACTGCGAAGTACGAGTGCGACTTCATCGGCATACAGGAGACTCG
CCGCGATGGAAGGACAACCATCCAAGCACCAGCCGCTGGTTATGTCGTGC
ACTGCAGCGGTCATTGCGATGGTGATAGAGGTAAGCCCGGGAGACTCGGG
GTTGGTCTGGCTTTCAGGGAGTCTATCGCTCGCGCACTCTGCCCAGATGA
NNNNNNNNNNCACACCAGTGCACGGCTGTTAAAGGTGGGGGTGATTTTCA
AACACAGAGCCGTCACAACCTTCATCGTAGGATACACTCCGGCTGAAACA
GCAGCCACCTGTCACAAATCTAAGTTCTAGAAGGAACTTCGCAGCACCAT
CGCTGAGGTACCTGCCAGCGATCACCTGATTTTAATGATGGATGCTAACG
CCCGTACGGGAGGAAGGGGAGAGGGAGGTGGACTAGGGGGTCTCCGGGTT
TTGGGTCCATACGGCAGAGACACTCTCAATAACAACGGGTTGCGACTTCT
AGCATGTGCTGCCGAGCACAAGCTGTCGATTGTCAACACCTTT
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Coding sequence (CDS) from alignment at H-elongata_contig61022:3045..3587+

>mRNA_H-elongata_contig61022.13650.1 ID=mRNA_H-elongata_contig61022.13650.1|Name=mRNA_H-elongata_contig61022.13650.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig61022:3045..3587+ (Himanthalia elongata Himel1 dioecious)
ATGTTCACTGCGAAGTACGAGTGCGACTTCATCGGCATACAGGAGACTCG
CCGCGATGGAAGGACAACCATCCAAGCACCAGCCGCTGGTTATGTCGTGC
ACTGCAGCGGTCATTGCGATGGTGATAGAGGTAAGCCCGGGAGACTCGGG
GTTGGTCTGGCTTTCAGGGAGTCTATCGCTCGCGCACTCTGCCCAGATGA
NNNNNNNNNNCACACCAGTGCACGGCTGTTAAAGGTGGGGGTGATTTTCA
AACACAGAGCCGTCACAACCTTCATCGTAGGATACACTCCGGCTGAAACA
GCAGCCACCTGTCACAAATCTAAGTTCTAGATGTTCACTGCGAAGTACGA
GTGCGACTTCATCGGCATACAGGAGACTCGCCGCGATGGAAGGACAACCA
TCCAAGCACCAGCCGCTGGTTATGTCGTGCACTGCAGCGGTCATTGCGAT
GGTGATAGAGGTAAGCCCGGGAGACTCGGGGTTGGTCTGGCTTTCAGGGA
GTCTATCGCTCGCGCACTCTGCCCAGATGANNNNNNNNNNCACACCAGTG
CACGGCTGTTAAAGGTGGGGGTGATTTTCAAACACAGAGCCGTCACAACC
TTCATCGTAGGATACACTCCGGCTGAAACAGCAGCCACCTGTCACAAATC
TAAGTTCTAG
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