mRNA_H-elongata_contig61016.13647.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61016.13647.1
Unique NamemRNA_H-elongata_contig61016.13647.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61016.13647.1 vs. uniprot
Match: D7FK96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK96_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.350e-7
Identity = 25/38 (65.79%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 QANGKGTAFRKMAAKESLKLACFFAAVRAAHFWMNRQR 114
            QANGKG  FRK A    LKL  FFAAVR AH+ MNR R
Sbjct:    9 QANGKGNEFRKAATSSGLKLLAFFAAVRVAHYAMNRPR 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61016.13647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK96_ECTSI1.350e-765.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61016contigH-elongata_contig61016:1255..1371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003260.1
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.2659602-CDS-H-elongata_contig61016:1254..13711622930985.2659602-CDS-H-elongata_contig61016:1254..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61016 1255..1371 +
1691679651.178589-CDS-H-elongata_contig61016:1254..13711691679651.178589-CDS-H-elongata_contig61016:1254..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61016 1255..1371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61016.13647.1prot_H-elongata_contig61016.13647.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61016 1255..1371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61016.13647.1

>prot_H-elongata_contig61016.13647.1 ID=prot_H-elongata_contig61016.13647.1|Name=mRNA_H-elongata_contig61016.13647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
QANGKGTAFRKMAAKESLKLACFFAAVRAAHFWMNRQR*
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mRNA from alignment at H-elongata_contig61016:1255..1371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61016.13647.1 ID=mRNA_H-elongata_contig61016.13647.1|Name=mRNA_H-elongata_contig61016.13647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig61016:1255..1371+ (Himanthalia elongata Himel1 dioecious)
CAGGCTAACGGCAAAGGAACGGCTTTCCGGAAGATGGCGGCGAAAGAAAG
CTTGAAGCTCGCGTGTTTCTTTGCGGCGGTGCGAGCGGCGCACTTCTGGA
TGAACCGACAACGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig61016:1255..1371+

>mRNA_H-elongata_contig61016.13647.1 ID=mRNA_H-elongata_contig61016.13647.1|Name=mRNA_H-elongata_contig61016.13647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig61016:1255..1371+ (Himanthalia elongata Himel1 dioecious)
CAGGCTAACGGCAAAGGAACGGCTTTCCGGAAGATGGCGGCGAAAGAAAG
CTTGAAGCTCGCGTGTTTCTTTGCGGCGGTGCGAGCGGCGCACTTCTGGA
TGAACCGACAACGATAACAGGCTAACGGCAAAGGAACGGCTTTCCGGAAG
ATGGCGGCGAAAGAAAGCTTGAAGCTCGCGTGTTTCTTTGCGGCGGTGCG
AGCGGCGCACTTCTGGATGAACCGACAACGATAA
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