prot_H-elongata_contig60950.13637.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60950.13637.1
Unique Nameprot_H-elongata_contig60950.13637.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length74
Homology
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 5.380e-31
Identity = 60/72 (83.33%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDLEARLDQAQEDLRSGVRPGRERGAG-SDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 71
            M+LEARLDQAQ+DL+SGVRPGRE+GAG SDRVLPRAPAK  L GHRNP+TCV+LHP+YSVVAS+SEDATVKV
Sbjct:    1 MELEARLDQAQDDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 72          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.460e-30
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDLEARLDQAQEDLRSGVRPGRERGAG-SDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 71
            MDLEARLDQAQ+DL+SGVRPGRE+GAG SDRVLPRAPAK  L GHRNP+TCV+LHP+YSVVAS+SEDATVKV
Sbjct:   67 MDLEARLDQAQQDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 138          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A835Z701_9STRA (Lissencephaly-1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z701_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.910e-14
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 0
Query:    1 MDLEARLD---QAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 71
            +DLEA+L      Q       RPGRE+ AG+ R+LPRAPAK  LAGHR+ +T V++HPVYS+VASASEDA+V++
Sbjct:   67 LDLEAKLAAMVSEQSSAGGAQRPGREKAAGA-RLLPRAPAKHLLAGHRSSVTAVAMHPVYSLVASASEDASVRI 139          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A481SYL0_9HEXA (Lissencephaly-1 homolog n=1 Tax=Isotomurus palustris TaxID=36144 RepID=A0A481SYL0_9HEXA)

HSP 1 Score: 73.2 bits (178), Expect = 1.860e-13
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 0
Query:    1 MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 71
            M+LEA+L +A+ +  SG  P RE+ + SD  +PR P K AL GHR+P+T V LHP+YS+V SASEDAT++V
Sbjct:   73 MELEAKLSEAEREFSSGA-PSREKRSSSD-WIPRPPEKFALRGHRSPVTRVLLHPIYSLVVSASEDATIRV 141          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A507CB31_9FUNG (Nuclear distribution protein PAC1 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CB31_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 3.370e-13
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 0
Query:    1 MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVK 70
            +DLE ++ Q QE++ SG  P R+  +GS+  LPRAP K AL GHR+PIT ++ HPV+++V SASEDATVK
Sbjct:   61 LDLETKIQQLQEEVASG--PIRK-ASGSNEWLPRAPEKLALTGHRSPITRIAFHPVFTIVGSASEDATVK 127          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: H2XLI2_CIOIN (Lissencephaly-1 homolog n=3 Tax=Ciona TaxID=7718 RepID=H2XLI2_CIOIN)

HSP 1 Score: 71.6 bits (174), Expect = 6.450e-13
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 0
Query:    1 MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 71
            MDLEA+L++ Q++ R G+ P  ++       +PR P + AL+GHRNPIT V  HPVYSVV SA+ED+T+KV
Sbjct:   67 MDLEAKLNELQKETRDGLTPHNKKDPSE--WIPRPPERCALSGHRNPITRVIFHPVYSVVLSAAEDSTIKV 135          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A6A4WZR8_AMPAM (Lissencephaly-1 homolog n=5 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4WZR8_AMPAM)

HSP 1 Score: 71.2 bits (173), Expect = 8.650e-13
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 0
Query:    1 MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 71
            M+LEA L   Q ++++G  P RE+ + SD  +PR P K ALAGHR P+T V LHPVYS++ASASEDAT+KV
Sbjct:   66 MELEANLADFQREMQAGA-PTREKRSPSD-WIPRPPEKYALAGHRAPVTKVLLHPVYSLMASASEDATIKV 134          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: UPI00074270B1 (lissencephaly-1 homolog B-like n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=UPI00074270B1)

HSP 1 Score: 67.4 bits (163), Expect = 1.490e-12
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 0
Query:    1 MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKVCL 73
            M+LE++L++ +ED+  G   G++R       +PR P + AL+GHR P+T V  HPV+SV+ +ASEDAT+KVCL
Sbjct:   66 MELESKLNEVKEDMTYGGPVGQKRDP--KEWIPRPPERYALSGHRAPVTRVIFHPVFSVMVTASEDATIKVCL 136          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A6Q8PH33_HUMAN (Platelet-activating factor acetylhydrolase IB subunit beta n=1 Tax=Homo sapiens TaxID=9606 RepID=A0A6Q8PH33_HUMAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.610e-12
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 0
Query:    1 MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 71
            M+LE++L++A+E+  SG   G++R       +PR P K AL+GHR+P+T V  HPV+SV+ SASEDAT+KV
Sbjct:    1 MELESKLNEAKEEFTSGGPLGQKRDP--KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKV 69          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A8H7RZ39_9FUNG (Nuclear distribution protein PAC1 n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RZ39_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 1.640e-12
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 0
Query:    1 MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 71
            MDLE++ +Q QE+L +   P R++ +  D  +PR P K  L GHRNPITCV+ HPVY ++ASASED T+K+
Sbjct:   56 MDLESKANQMQEELNNA--PVRKQTSSVD-WIPRPPEKHDLTGHRNPITCVTFHPVYQILASASEDTTIKI 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ3_9PHAE5.380e-3183.33Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
D7G1C0_ECTSI1.460e-3084.72Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A835Z701_9STRA2.910e-1456.76Lissencephaly-1 homolog n=1 Tax=Tribonema minus Ta... [more]
A0A481SYL0_9HEXA1.860e-1354.93Lissencephaly-1 homolog n=1 Tax=Isotomurus palustr... [more]
A0A507CB31_9FUNG3.370e-1355.71Nuclear distribution protein PAC1 n=1 Tax=Synchytr... [more]
H2XLI2_CIOIN6.450e-1352.11Lissencephaly-1 homolog n=3 Tax=Ciona TaxID=7718 R... [more]
A0A6A4WZR8_AMPAM8.650e-1357.75Lissencephaly-1 homolog n=5 Tax=Thoracicalcarea Ta... [more]
UPI00074270B11.490e-1247.95lissencephaly-1 homolog B-like n=1 Tax=Cyprinodon ... [more]
A0A6Q8PH33_HUMAN1.610e-1250.70Platelet-activating factor acetylhydrolase IB subu... [more]
A0A8H7RZ39_9FUNG1.640e-1252.11Nuclear distribution protein PAC1 n=1 Tax=Mucor ci... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 34..73
e-value: 0.0076
score: 25.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 41..71
score: 9.84
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 30..72
e-value: 1.2E-6
score: 29.6
NoneNo IPR availablePANTHERPTHR44129:SF7coord: 1..71
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 1..71
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 41..73
score: 9.151
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 41..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60950contigH-elongata_contig60950:337..558 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60950.13637.1mRNA_H-elongata_contig60950.13637.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60950 328..558 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60950.13637.1 ID=prot_H-elongata_contig60950.13637.1|Name=mRNA_H-elongata_contig60950.13637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITC
VSLHPVYSVVASASEDATVKVCL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf