mRNA_H-elongata_contig60945.13636.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60945.13636.1
Unique NamemRNA_H-elongata_contig60945.13636.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60945.13636.1 vs. uniprot
Match: D8LEK4_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK4_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.150e-73
Identity = 114/172 (66.28%), Postives = 142/172 (82.56%), Query Frame = 1 
Query:    1 QGFEEEFKNATEAYGVLSDDGQRKIYDRTLGVRKIDSPSSRWAEAAKKMKNQKPLYTSPPPPGQRFHNEAEWKAWHYGVDAIQTDPFQQESNWLDLRNNKHQAYFRRQQDREKAMYGVGRGHKFNASRQRYEVIERVRMRREVRLQREKETRMRSEGGTGRESASDAVCSIS 516
            +G E+EFK+A+EAY VL+D  QR+IYDRTLGVRK++S S+RWA+AAKK K Q+PLYT+ PPPG + HNE EWKAWHYGVDA+Q + F QE+NWLDL  N+HQAYFRRQ+ +EKAMYGVGRGHKFNASRQR++VIERVR+RRE RL+R++  R   +      +A+D VCSIS
Sbjct:   39 KGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNSSSTRWADAAKKTKAQQPLYTAKPPPGMKIHNEGEWKAWHYGVDAVQKEAFVQEANWLDLEGNRHQAYFRRQEKKEKAMYGVGRGHKFNASRQRHDVIERVRLRREERLKRDRSRRPAED-----NAAADDVCSIS 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60945.13636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEK4_ECTSI1.150e-7366.28Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60945contigH-elongata_contig60945:590..2811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1.3e-39
Seed eggNOG ortholog2880.D8LEK4
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0715@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-23_002700.1
Exons3
Model size695
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60945.13636.1prot_H-elongata_contig60945.13636.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60945 766..1963 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.3719096-UTR-H-elongata_contig60945:589..7651622930984.3719096-UTR-H-elongata_contig60945:589..765Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60945 590..765 -
1691679650.8591495-UTR-H-elongata_contig60945:589..7651691679650.8591495-UTR-H-elongata_contig60945:589..765Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60945 590..765 -
1622930984.4135976-UTR-H-elongata_contig60945:1963..19851622930984.4135976-UTR-H-elongata_contig60945:1963..1985Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60945 1964..1985 -
1691679650.8940673-UTR-H-elongata_contig60945:1963..19851691679650.8940673-UTR-H-elongata_contig60945:1963..1985Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60945 1964..1985 -
1622930984.4295347-UTR-H-elongata_contig60945:2689..28111622930984.4295347-UTR-H-elongata_contig60945:2689..2811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60945 2690..2811 -
1691679650.901839-UTR-H-elongata_contig60945:2689..28111691679650.901839-UTR-H-elongata_contig60945:2689..2811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60945 2690..2811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.3888235-CDS-H-elongata_contig60945:765..10181622930984.3888235-CDS-H-elongata_contig60945:765..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60945 766..1018 -
1691679650.87052-CDS-H-elongata_contig60945:765..10181691679650.87052-CDS-H-elongata_contig60945:765..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60945 766..1018 -
1622930984.4004552-CDS-H-elongata_contig60945:1841..19631622930984.4004552-CDS-H-elongata_contig60945:1841..1963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60945 1842..1963 -
1691679650.8802364-CDS-H-elongata_contig60945:1841..19631691679650.8802364-CDS-H-elongata_contig60945:1841..1963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60945 1842..1963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60945.13636.1

>prot_H-elongata_contig60945.13636.1 ID=prot_H-elongata_contig60945.13636.1|Name=mRNA_H-elongata_contig60945.13636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MKNQKPLYTSPPPPGQRFHNEAEWKAWHYGVDAIQTDPFQQESNWLDLRN
NKHQAYFRRQQDREKAMYGVGRGHKFNASRQRYEVIERVRMRREVRLQRE
KETRMRSEGGTGRESASDAVCSIS*
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mRNA from alignment at H-elongata_contig60945:590..2811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60945.13636.1 ID=mRNA_H-elongata_contig60945.13636.1|Name=mRNA_H-elongata_contig60945.13636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2222bp|location=Sequence derived from alignment at H-elongata_contig60945:590..2811- (Himanthalia elongata Himel1 dioecious)
CAGGGCTTCGAAGAGGAGTTCAAGAACGCGACAGAGGCGTACGGCGTGCT
CTCCGACGATGGACAAAGAAAAATATACGATAGAACCCTTGGCGTGCGCA
AGATTGACTCTCCGAGCTCGCGGTGCGTTCGGGCAGCTCCGGCGGCGGCA
GCGCAACGGATCAGTCGCCCCGCCGAGCGATCGCGCGTCGAGTCTTTTTT
TAAGACGGTTATGTGGCACTAAGGCGTCGCCGGGCTTCCCCGGCGCCAAG
GAAGAGGAGATCGTTGTCTAGCCGTAGGCTGCTGCAACTCTCGATGTTGA
TTTATCCTACCACCGACTCCCTCGCGGTTGCAGCGGCGCGGTTACCCCGC
GCGATCTTTCACGAGTACAACAGCCCTCGCACAAAATTCACCCAAGGGAA
TACTTGGCCTCTTTGCCTTCCTGCCTGACGTTTCCCCCCTCCGAGCGTGA
CGATAGAATTGCCCGCTAGATTGCTCGAATGGTCGCGGCTTCGTCGCGTC
TTGTCACGTGACATCAGGTCCTCTCCGATCGCGGGGTCTGGAGTTTTCGT
ACCGTACTCTAGTAGCGTCGTTCGCCGGTGGGGAAAGGGAAGGGAAAGGG
AGGGGAGGCTGGGGTTTAAGGGGATGCGTAGAAGGGCTTCGGGGCTGCAC
GATATTACACTTGAACAAACCGCCGAAGATGTCGCCCGGTTTCAGACGTC
TCCAATCCGGGTCCCACGGTACATAATACATACATACACATACTTCAGTG
CCGATTATCGTTCTTTGGAGTTAACACATTTTTAAAAGCTATTTACATAT
ATAACGTTTTCGTACCGCGAGCGCAGTTGGGCGGAAGCAGCGAAAAAGAT
GAAGAACCAGAAGCCTCTTTACACGTCGCCGCCACCGCCGGGACAAAGAT
TCCATAACGAGGCGGAGTGGAAAGCGTGGCACTATGGAGTCGACGCCATA
CAGACTGACCCCTTTCAGCAGTGAGTGTGTCTGAGTCTGTGTATGTGTAA
GAAAGAGAGAGAGAGAAAGGGGGTAGGGGAGACGCAGAAAATCATTGCAC
AGGAAGACAAGCACGGGCATAAAACCGCACACATCGTGCGGGACATGATG
GGAAGTGCGCTGTGGATCAAAGCTCGCTGCTGGATGCCACGGCGTACCGT
TAGAAGCAGTCGGTTTCCCCTTTAACAGCCTACCGCGCTGCATGGTGGTC
TGTCATGATACCCCTGGGTTTTCCGCTTGATGACGTCATGATTTGATACT
ACTGTAGAGCGCGGCAGTCCGCGCGCGCTCTCTTGACCTTAATCCCTGGT
TGCACCGTGAACTGTGCGAGAGGAACGGATCTCAGTCATAACCTCTCCGT
CCCCCCCCCGTACCCCGCCGGAGCAATGCTCTATCTTCCCTCCCGAGTTT
GCGCGTGGTCAATGATCAATGGCCTAACAGCTAATACATGCAAAACTTGA
GTACGCCCCCTCCACCCCTCCTCCCTTGGAAGCAGTACCACCGTGGGCAT
CGCCCTAGCTAGGTATTAGGGTGCCTAGCGTCTCCGTACATGCTGTCGTA
TGCTCCACCGCGGTGTCGATGACGATGTCATTATACAATATACAAAATAC
ATGTTACATCACTCGTGGACACCGGCGGTAACCATGTGCGACATACGATC
AATTATTATAATGATGCTCCTCGAGGACAAAAGCCGCAGCACCTCGCCTT
TCCTCTCACCCCGAACTCGTGCTCTCTCCGGCTCGGTCGACGGTCGGGGG
ACCGCTTACCCCCCCCCCCCTCCCTCCTATTGCGGGCGGAAAGAGAATCG
AACTGGTTAGACTTGCGGAACAACAAACATCAGGCGTACTTTCGCAGACA
GCAGGACAGGGAGAAGGCGATGTACGGGGTGGGCCGGGGGCACAAGTTCA
ACGCCAGTCGGCAGCGGTACGAGGTGATCGAGAGGGTTCGGATGCGGCGG
GAGGTGCGGCTGCAGCGCGAGAAGGAGACAAGGATGCGGTCGGAGGGCGG
GACCGGGAGAGAGAGCGCGTCCGACGCCGTCTGTTCGATCTCTTGACGTG
GTGGGGGGTGGGGGATAACTTTCTTATTCTCTTTTGCGAAGAAGCCCAGG
TAGAAAGCGAATGGCGGGAGGGCGTTCGCCTCGTTTCAAGAAGCGTGTGA
AAAATAACCCATAAATTAGTATAGCTCTTTTTGTTGTTGAAAGTTTAGGA
AGTGAGTAATTCATATTTGTGT
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Coding sequence (CDS) from alignment at H-elongata_contig60945:590..2811-

>mRNA_H-elongata_contig60945.13636.1 ID=mRNA_H-elongata_contig60945.13636.1|Name=mRNA_H-elongata_contig60945.13636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig60945:590..2811- (Himanthalia elongata Himel1 dioecious)
ATGAAGAACCAGAAGCCTCTTTACACGTCGCCGCCACCGCCGGGACAAAG
ATTCCATAACGAGGCGGAGTGGAAAGCGTGGCACTATGGAGTCGACGCCA
TACAGACTGACCCCTTTCAGCAATGAAGAACCAGAAGCCTCTTTACACGT
CGCCGCCACCGCCGGGACAAAGATTCCATAACGAGGCGGAGTGGAAAGCG
TGGCACTATGGAGTCGACGCCATACAGACTGACCCCTTTCAGCAAGAATC
GAACTGGTTAGACTTGCGGAACAACAAACATCAGGCGTACTTTCGCAGAC
AGCAGGACAGGGAGAAGGCGATGTACGGGGTGGGCCGGGGGCACAAGTTC
AACGCCAGTCGGCAGCGGTACGAGGTGATCGAGAGGGTTCGGATGCGGCG
GGAGGTGCGGCTGCAGCGCGAGAAGGAGACAAGGATGCGGTCGGAGGGCG
GGACCGGGAGAGAGAGCGCGTCCGACGCCGTCTGTTCGATCTCTTGAAGA
ATCGAACTGGTTAGACTTGCGGAACAACAAACATCAGGCGTACTTTCGCA
GACAGCAGGACAGGGAGAAGGCGATGTACGGGGTGGGCCGGGGGCACAAG
TTCAACGCCAGTCGGCAGCGGTACGAGGTGATCGAGAGGGTTCGGATGCG
GCGGGAGGTGCGGCTGCAGCGCGAGAAGGAGACAAGGATGCGGTCGGAGG
GCGGGACCGGGAGAGAGAGCGCGTCCGACGCCGTCTGTTCGATCTCTTGA
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