prot_H-elongata_contig60938.13634.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig60938.13634.1
Unique Name	prot_H-elongata_contig60938.13634.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	113

Homology

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: D7G0D5_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D5_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 4.150e-52
Identity = 81/106 (76.42%), Postives = 93/106 (87.74%), Query Frame = 0

Query:    6 NQAATTTATSMSSMDGMVGVSNEAGGKVFDPLGLAELHTINPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 111
            ++A++ T  SMS++DG VGVS EAGG VFDPLGLAELH+INP VNPHPKWL+E+EIKHCRICMLAFVGI AAQ+G  FPGL Y+AVPWYDQF EF SKNPGGLAQ+
Sbjct:   32 SKASSKTPLSMSAVDGEVGVSLEAGGAVFDPLGLAELHSINPLVNPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFVFPGLGYDAVPWYDQFHEFASKNPGGLAQL 137

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A836CLY0_9STRA (Light harvesting complex protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.950e-25
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 0

Query:   23 VGVSNEAGGKVFDPLGLAELHTINPY-VNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 111
            +G   E G + +DP+G ++++ +N   +NPHP+WL+ESEIKH R  MLAFVG +   AGIH PGL Y    WY+ F EF +KNP GLAQV
Sbjct:    6 LGAGVETGNEPWDPMGFSQMYKVNSLGINPHPQWLQESEIKHGRTAMLAFVGTLVIHAGIHIPGLDY-TTDWYNSFPEFAAKNPLGLAQV 94

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: Q9ATC4_VAULI (Light harvesting complex protein 2 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=Q9ATC4_VAULI)

HSP 1 Score: 93.2 bits (230), Expect = 6.860e-22
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0

Query:   49 VNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 111
            +NPHP+WL+ESEIKH RICMLAFVG +   AGIH P L Y +  WY+ F EFV+KNP GLAQV
Sbjct:    4 INPHPQWLQESEIKHGRICMLAFVGTLVIHAGIHIPNLGYTS-DWYNSFPEFVAKNPLGLAQV 65

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A8J5XJ42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJ42_DIALT)

HSP 1 Score: 93.2 bits (230), Expect = 2.480e-21
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 0

Query:   18 SMDGMVGVSNEAGGKVFDPLGLAELHTI----NPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 111
            S+  + G S E GGK +DPLG A+L+ +     P  NP  KWLRE+E+KHCR+ MLAF+G      G H PG A+    W+     F ++NPGG AQ+
Sbjct:   27 SLSDLPGASIELGGKPWDPLGFAKLNALPTGSGPASNPSLKWLREAEVKHCRVAMLAFLGTAFQTFGPHLPGAAFSEPDWFKASYTFSAQNPGGAAQI 124

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A7S2BU75_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU75_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.660e-19
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 0

Query:   19 MDGMVGVSNEAGGKVFDPLGLAELHTI----NPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPG----LAYEAVPWYDQFGEFVSKNPGGLAQV 111
            +D MVGV  E+G KV+DP+    +  +    +  V P  KWLRE+EIKH R+CMLAFVG   A  G+ FPG      YEA  WYD     +S N  G+AQ+
Sbjct:   51 LDSMVGVGPESGNKVWDPMSFGSVSKVIAGEHSTVMPDVKWLREAEIKHGRVCMLAFVGTCFAANGVVFPGDLGGFHYEACAWYDGLASGLSTNSFGMAQL 151

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A6V1SPG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SPG2_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 3.640e-18
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 0

Query:   19 MDGMVGVSNEAGGKVFDPLGLAELHTINPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 111
            ++ MVG   E G K +DPL L++L  ++   NPH  WLRESE+KH R+ MLA VG+ A   G   PG   E   W   +GE + KNP    Q+
Sbjct:   36 LEDMVGAGVETGNKPWDPLNLSKLSDVSQN-NPHVNWLRESELKHGRVAMLASVGVFATSIGARIPGYPVETKDWTAAYGEMIEKNPLAFVQI 127

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A7S0PWE2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PWE2_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 3.720e-15
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 0

Query:   23 VGVSNEAGGKVFDPLGLAELHTINPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 111
            VG S E G K +DP  L EL  ++   NP   WLRE+E+KH R+ MLAF G++A   G+H PG  +    W    G    KN GG+ Q+
Sbjct:   61 VGSSVELGDKPWDPWSLTELWKVSAN-NPDVAWLREAELKHGRLSMLAFAGVLATNGGLHLPGEFWTDSDWTTALGSTFGKNSGGMTQI 148

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A7S0NXV2_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NXV2_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 5.550e-15
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 0

Query:   23 VGVSNEAGGKVFDPLGLAELHTINPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 111
            VG S E G   +DP  L EL  ++   NP   WLRE+E+KH R+ MLAF GI+A   G+H PG  +    W    G   +KNP G+ Q+
Sbjct:   65 VGASVEFGDAPWDPWSLTELWKVSAN-NPDVAWLREAELKHGRLSMLAFAGILATNGGLHLPGEFWTDSDWTSALGSTFAKNPSGMLQI 152

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: I2CR44_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR44_NANGC)

HSP 1 Score: 75.9 bits (185), Expect = 1.080e-14
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 0

Query:   19 MDGMVGVSNEAGGKVFDPLGLAELHTINPY-VNPHPKWLRESEIKHCRICMLAFVG-IVAAQAGIHFPGLAYEAVPWYDQ-FGEFVSKNPGGLAQV 111
            ++G VG   E GGK +DPLG A +   N   +NPH KWL+ESEIKH R  MLAF+G IV    G++ P   Y   P + Q F + +  NP G+AQ+
Sbjct:   17 LEGQVGYDVETGGKPWDPLGFAGISERNNLGINPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGVYVP--TYPQEPDFTQAFYKALQNNPLGMAQI 110

[Close]

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A4D9CZC1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZC1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.690e-14
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 0

Query:   19 MDGMVGVSNEAGGKVFDPLGLAELHTINPY-VNPHPKWLRESEIKHCRICMLAFVG-IVAAQAGIHFPGLAYEAVPWYDQ-FGEFVSKNPGGLA 109
            ++G VG   E GGK +DPLGLA +   N   +NPH KWL+ESEIKH R  MLAF+G IV    G++ P   Y   P + Q F + +  NP G+A
Sbjct:   33 LEGQVGYDVETGGKPWDPLGLAGISERNNLGINPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGVYVP--TYPQEPDFTQAFYKALQNNPLGMA 124

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot

BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G0D5_ECTSI	4.150e-52	76.42	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A836CLY0_9STRA	4.950e-25	52.22	Light harvesting complex protein 2 n=1 Tax=Tribone...	[more]
Q9ATC4_VAULI	6.860e-22	66.67	Light harvesting complex protein 2 (Fragment) n=4 ...	[more]
A0A8J5XJ42_DIALT	2.480e-21	44.90	Uncharacterized protein n=1 Tax=Diacronema lutheri...	[more]
A0A7S2BU75_9STRA	7.660e-19	45.54	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A6V1SPG2_HETAK	3.640e-18	43.01	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S0PWE2_9EUKA	3.720e-15	42.70	Hypothetical protein n=1 Tax=Coccolithus braarudii...	[more]
A0A7S0NXV2_9EUKA	5.550e-15	42.70	Hypothetical protein n=2 Tax=Calcidiscus leptoporu...	[more]
I2CR44_NANGC	1.080e-14	45.83	Uncharacterized protein n=1 Tax=Nannochloropsis ga...	[more]
A0A4D9CZC1_9STRA	7.690e-14	46.81	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 25..95 e-value: 4.2E-14 score: 53.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 11..111 e-value: 9.7E-13 score: 50.3
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 8..88
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 8..88
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 28..96
None	No IPR available	TMHMM	TMhelix		coord: 66..88

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig60938	contig	H-elongata_contig60938:937..3499 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig60938.13634.1	mRNA_H-elongata_contig60938.13634.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig60938 937..3499 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig60938.13634.1 ID=prot_H-elongata_contig60938.13634.1|Name=mRNA_H-elongata_contig60938.13634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MCIVQNQAATTTATSMSSMDGMVGVSNEAGGKVFDPLGLAELHTINPYVN
PHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEF
VSKNPGGLAQVH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln