prot_H-elongata_contig6091.13632.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6091.13632.1
Unique Nameprot_H-elongata_contig6091.13632.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length264
Homology
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 2.080e-79
Identity = 137/272 (50.37%), Postives = 168/272 (61.76%), Query Frame = 0
Query:    1 MYGDPTQTQGIVIPAVMVSQEAGKYLWFKRFWLAS--GTMRVSINATGHILLRTPPVGTLESLGIYILLVVMLLTFSGIFGLIFAMAYTWYQRGARARGMRRLKSFVYHQQKPVLV--------GTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDNNGM--RADDDTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRETFSRGVLPWVSVPQIEAIMAELAELCTDNLTVMVLFFLSSVACGYVAARLS 260
            MYGDP  TQGI IPAV+VS   G+ LW  R WL    G +R S+ A GHI++   PVG LE LGIY+LL V+LL FSG+ GL+FA+ +TWYQRG R R MR+LKSF + ++ P           GTS                                    ++NG   R DDD CAICLE+YE+GDSLT LPC+HSFH+ CIR WLSG S LCPMCK E F +G L   + P++EA  AELA LCT+NL V+ LFFL+SVACG +AA+LS
Sbjct:  203 MYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRPPPPTLGNQSDPAGTSSSNSGRASGTVDATTGQASSLGNGTGSAASEDNSSSNDNGFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLS 474          
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: A0A7S2RLQ5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLQ5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.400e-14
Identity = 63/227 (27.75%), Postives = 91/227 (40.09%), Query Frame = 0
Query:   11 IVIPAVMVSQEAGKYLW-----------FKRFW--LASGT---------MRVSINATGHILLRTPPVGTLESLGIYILLVVMLLTFSGIFGLIFAMAYTWYQRGARARGMRRLKSFVYHQQKPVLVGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDNNGMRADDDTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRETFSRGV 215
            + IP++ VS   G+ LW             + W  L SG           RVS+NATG++++    V  LE+  IY+++ + LLT S    L  A+   WY +  R R +  L  F Y     V    +                                   E  + +   D TC+ICL+ Y  G++L  LPC H FH  CI  WL   S  CP+CK+     G+
Sbjct:  176 VSIPSIFVSYRTGQRLWQAAQIHGTGGGMTQRWRLLLSGVGFTAAGMRFPRVSVNATGNVMVSMQLVRPLETFIIYVVVSLALLTLSACLWLSLALGLAWYTQLQRRRALMALHRFKYDPSTTVAPPATPYTSPSASSHS------------------------EKRSPVLCRDTTCSICLDDYASGETLRALPCGHVFHDRCITPWLERRSVDCPLCKQPALPAGI 378          
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: A0A7R9A671_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A671_9CRUS)

HSP 1 Score: 75.5 bits (184), Expect = 6.230e-12
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0
Query:  163 DTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRETFSRGVLP 217
            DTCAICLE Y EG+ L  LPC H+FHS C+  WL+    +CP CKR+ F+R   P
Sbjct:  238 DTCAICLEDYNEGEKLRVLPCSHAFHSKCVDPWLTKTKRVCPCCKRKVFTRDENP 292          
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: A0A397V5L1_9GLOM (RING-type domain-containing protein (Fragment) n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397V5L1_9GLOM)

HSP 1 Score: 67.8 bits (164), Expect = 1.900e-11
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0
Query:  162 DDTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRE 209
            ++TCAICLE +E+GD +  LPC H +H  CI  WL+  S  CP+CK++
Sbjct:    9 EETCAICLEDFEDGDKIRELPCHHCYHVECIDPWLTTKSSSCPLCKKD 56          
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: A0A6A4VM16_AMPAM (E3 ubiquitin-protein ligase RNF13 n=4 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VM16_AMPAM)

HSP 1 Score: 73.6 bits (179), Expect = 2.910e-11
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0
Query:  163 DTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRETFSRGVLPWVSVPQIEAIM 228
            +TCAICLE Y EGD L  LPCKH+FH HC+  WL  +  +CP+CKR   S  +   VS  + + ++
Sbjct:  227 ETCAICLEDYLEGDQLRVLPCKHAFHCHCVDPWLLRSRRVCPVCKRRLVSATLAVLVSESEDDQLL 292          
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: A0A6L2PPI6_COPFO (RING-type domain-containing protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PPI6_COPFO)

HSP 1 Score: 73.6 bits (179), Expect = 3.050e-11
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0
Query:  163 DTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRETFSRG 214
            +TCAICLE Y+EG+ L  LPC H++HS CI  WL+    +CP+CKR+ F+ G
Sbjct:  241 ETCAICLEDYQEGEKLRILPCSHAYHSKCIDPWLTRNRRVCPVCKRKVFAEG 292          
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: A0A1J1IBN3_9DIPT (CLUMA_CG011065, isoform A n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1IBN3_9DIPT)

HSP 1 Score: 73.6 bits (179), Expect = 3.430e-11
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0
Query:  163 DTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRETFSRG 214
            DTCAICL+ YEEGD L  LPC+H++H+ CI  WL+    +CP+CKR+ ++ G
Sbjct:  229 DTCAICLDDYEEGDKLRILPCRHAYHTKCIDVWLTKNRRVCPVCKRKVYTIG 280          
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: A0A2J7PE22_9NEOP (RING-type domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PE22_9NEOP)

HSP 1 Score: 73.2 bits (178), Expect = 4.130e-11
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0
Query:  163 DTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRETFSRG 214
            +TCAICLE Y+EG+ L  LPC H++HS CI  WL+    +CP+CKR+ F+ G
Sbjct:  242 ETCAICLEDYQEGEKLRILPCAHAYHSKCIDPWLTRNRRVCPVCKRKVFAEG 293          
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: A0A7R9S8S5_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9S8S5_9CRUS)

HSP 1 Score: 72.8 bits (177), Expect = 4.350e-11
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:  163 DTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRETFS 212
            D CAICLE YEEGDSL  LPC H +H+ C+  WL+    +CP CKR+ F+
Sbjct:  235 DVCAICLEEYEEGDSLRILPCSHGYHTKCVDPWLTKNKRVCPCCKRKVFA 284          
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Match: A0A6J1TLT9_FRAOC (E3 ubiquitin-protein ligase RNF13 isoform X1 n=2 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1TLT9_FRAOC)

HSP 1 Score: 73.2 bits (178), Expect = 4.590e-11
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0
Query:  163 DTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGASGLCPMCKRETFSR 213
            DTCAICLE Y+EG+ L  LPC H++HS CI  WL+    +CP+CKR+ F++
Sbjct:  252 DTCAICLEDYQEGEKLRILPCSHAYHSKCIDPWLTRNRRVCPVCKRKVFAQ 302          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6091.13632.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL22_ECTSI2.080e-7950.37RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2RLQ5_9STRA1.400e-1427.75Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7R9A671_9CRUS6.230e-1254.55Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A397V5L1_9GLOM1.900e-1150.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A6A4VM16_AMPAM2.910e-1146.97E3 ubiquitin-protein ligase RNF13 n=4 Tax=Amphibal... [more]
A0A6L2PPI6_COPFO3.050e-1153.85RING-type domain-containing protein n=1 Tax=Coptot... [more]
A0A1J1IBN3_9DIPT3.430e-1153.85CLUMA_CG011065, isoform A n=1 Tax=Clunio marinus T... [more]
A0A2J7PE22_9NEOP4.130e-1153.85RING-type domain-containing protein n=2 Tax=Crypto... [more]
A0A7R9S8S5_9CRUS4.350e-1156.00Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
A0A6J1TLT9_FRAOC4.590e-1154.90E3 ubiquitin-protein ligase RNF13 isoform X1 n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 165..206
e-value: 2.4E-9
score: 47.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 163..207
e-value: 1.1E-13
score: 51.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 165..207
score: 13.168
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 136..211
e-value: 3.1E-20
score: 73.6
NoneNo IPR availablePANTHERPTHR45977FAMILY NOT NAMEDcoord: 48..209
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 238..257
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..237
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..60
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 258..263
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..89
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 159..212
NoneNo IPR availableTMHMMTMhelixcoord: 61..83
NoneNo IPR availableTMHMMTMhelixcoord: 238..257

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6091contigH-elongata_contig6091:8812..9851 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6091.13632.1mRNA_H-elongata_contig6091.13632.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6091 1981..11165 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6091.13632.1 ID=prot_H-elongata_contig6091.13632.1|Name=mRNA_H-elongata_contig6091.13632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MYGDPTQTQGIVIPAVMVSQEAGKYLWFKRFWLASGTMRVSINATGHILL
RTPPVGTLESLGIYILLVVMLLTFSGIFGLIFAMAYTWYQRGARARGMRR
LKSFVYHQQKPVLVGTSSSGGDDDHRALRSSGGTVDDAGRDSTSASGRGG
SREDNNGMRADDDTCAICLESYEEGDSLTRLPCKHSFHSHCIRQWLSGAS
GLCPMCKRETFSRGVLPWVSVPQIEAIMAELAELCTDNLTVMVLFFLSSV
ACGYVAARLSSDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD