mRNA_H-elongata_contig117436.1363.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117436.1363.1
Unique NamemRNA_H-elongata_contig117436.1363.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 55.5 bits (132), Expect = 3.680e-7
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   28 LHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYCTAFGIDPKCWMRAAQDE 216
            L + G VARM D+RLP +++ GE+  GKR +    KR +D +     AF I+P  W  AAQD+
Sbjct:  835 LRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDK 897
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BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 52.0 bits (123), Expect = 5.570e-6
Identity = 23/71 (32.39%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 IEAAVMKRILHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYCTAFGIDPKCWMRAAQD 213
            +E+ + KR L + G + RM D+RLP I++ GE+  G R   +P KR +D + +   +  +  + W   A+D
Sbjct:  221 VESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAED 291
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BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 52.0 bits (123), Expect = 5.930e-6
Identity = 23/71 (32.39%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 IEAAVMKRILHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYCTAFGIDPKCWMRAAQD 213
            +E+ + KR L + G + RM D+RLP I++ GE+  G R   +P KR +D + +   +  +  + W   A+D
Sbjct:  288 VESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAED 358
[Close]
BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 52.0 bits (123), Expect = 6.090e-6
Identity = 23/71 (32.39%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 IEAAVMKRILHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYCTAFGIDPKCWMRAAQD 213
            +E+ + KR L + G + RM D+RLP I++ GE+  G R   +P KR +D + +   +  +  + W   A+D
Sbjct:  574 VESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAED 644
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8C5PP25_9ANUR3.680e-742.86Reverse transcriptase domain-containing protein n=... [more]
A0A6S7JKI9_PARCT5.570e-632.39Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7K883_PARCT5.930e-632.39RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT6.090e-632.39RNA-directed DNA polymerase from mobile element jo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117436contigH-elongata_contig117436:1462..1686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929684.4247544-CDS-H-elongata_contig117436:1461..16711622929684.4247544-CDS-H-elongata_contig117436:1461..1671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117436 1462..1671 -
1691679118.4475386-CDS-H-elongata_contig117436:1461..16711691679118.4475386-CDS-H-elongata_contig117436:1461..1671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117436 1462..1671 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929684.4399178-UTR-H-elongata_contig117436:1671..16861622929684.4399178-UTR-H-elongata_contig117436:1671..1686Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117436 1672..1686 -
1691679118.4572637-UTR-H-elongata_contig117436:1671..16861691679118.4572637-UTR-H-elongata_contig117436:1671..1686Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117436 1672..1686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117436.1363.1prot_H-elongata_contig117436.1363.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117436 1462..1671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117436.1363.1

>prot_H-elongata_contig117436.1363.1 ID=prot_H-elongata_contig117436.1363.1|Name=mRNA_H-elongata_contig117436.1363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MKRILHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYC
TAFGIDPKCWMRAAQDEPE*
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mRNA from alignment at H-elongata_contig117436:1462..1686-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117436.1363.1 ID=mRNA_H-elongata_contig117436.1363.1|Name=mRNA_H-elongata_contig117436.1363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig117436:1462..1686- (Himanthalia elongata Himel1 dioecious)
ATTGAGGCTGCTGTGATGAAGCGCATCCTCCACTACACCGGCCAAGTCGC
GCGCATGCACGACGATCGCCTCCCCAACATCGTCATGCGTGGCGAAATGA
TCGGAGGGAAGAGAAAACGGGACCAGCCTGCGAAACGCCTCCAAGACCGT
GTCACGGAATACTGCACTGCCTTCGGAATCGACCCCAAGTGTTGGATGCG
GGCCGCTCAAGATGAACCTGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig117436:1462..1686-

>mRNA_H-elongata_contig117436.1363.1 ID=mRNA_H-elongata_contig117436.1363.1|Name=mRNA_H-elongata_contig117436.1363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig117436:1462..1686- (Himanthalia elongata Himel1 dioecious)
ATGAAGCGCATCCTCCACTACACCGGCCAAGTCGCGCGCATGCACGACGA
TCGCCTCCCCAACATCGTCATGCGTGGCGAAATGATCGGAGGGAAGAGAA
AACGGGACCAGCCTGCGAAACGCCTCCAAGACCGTGTCACGGAATACTGC
ACTGCCTTCGGAATCGACCCCAAGTGTTGGATGCGGGCCGCTCAAGATGA
ACCTGAGTAGATGAAGCGCATCCTCCACTACACCGGCCAAGTCGCGCGCA
TGCACGACGATCGCCTCCCCAACATCGTCATGCGTGGCGAAATGATCGGA
GGGAAGAGAAAACGGGACCAGCCTGCGAAACGCCTCCAAGACCGTGTCAC
GGAATACTGCACTGCCTTCGGAATCGACCCCAAGTGTTGGATGCGGGCCG
CTCAAGATGAACCTGAGTAG
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