mRNA_H-elongata_contig60895.13629.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60895.13629.1
Unique NamemRNA_H-elongata_contig60895.13629.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: A0A6H5KTZ2_9PHAE (Myosin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTZ2_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.010e-26
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDNKDWCVL 174
            FESFEHN FEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDF+EFPDNKD   L
Sbjct:  535 FESFEHNYFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFIEFPDNKDCITL 592
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BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: D7G635_ECTSI (Myosin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G635_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 5.010e-26
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDNKDWCVL 174
            FESFEHN FEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDF+EFPDNKD   L
Sbjct:  533 FESFEHNYFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFIEFPDNKDCITL 590
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BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: A0A836CM17_9STRA (Myosin-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM17_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.640e-22
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDNKDWCVL 174
            FESF HN +EQFLINYANEKLQQQFN FVFE+EQEEY+ EGIKWDFVEFPDNKD   L
Sbjct:  511 FESFHHNYYEQFLINYANEKLQQQFNHFVFEMEQEEYKREGIKWDFVEFPDNKDSIEL 568
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BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: A0A835YX87_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX87_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.270e-20
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDNKDWCVL 174
            FESF+ N FEQFLINYANEKLQQQFN FVFE+E  EYR EGIKWDFVEFP+NKD   L
Sbjct:  519 FESFDQNYFEQFLINYANEKLQQQFNHFVFEMEAVEYRKEGIKWDFVEFPNNKDSIEL 576
[Close]
BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: A0A7S3Y0W6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0W6_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 2.560e-18
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDN 156
            FE+FEHN FEQFLINYANE LQQQFN FVFEVEQEEYR E I W FV FPDN
Sbjct:  389 FETFEHNYFEQFLINYANEMLQQQFNTFVFEVEQEEYRQERITWSFVSFPDN 440
[Close]
BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: A0A6H5KDB8_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDB8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.530e-18
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDNKDWCVL 174
            FE FEHN+FEQ  INY NE LQQQFNQFVF++EQ+EY  EGI+W FVEFPDN+D   L
Sbjct:  423 FECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDL 480
[Close]
BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: A0A7S3PQR1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQR1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.530e-18
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDNKDWCVL 174
            FE FEHN+FEQ  INYANE LQQQFNQFVF++EQ+EY  E IKWDF++FPDN+    L
Sbjct:  152 FEVFEHNSFEQLCINYANETLQQQFNQFVFKLEQQEYERENIKWDFIDFPDNQKCLTL 209
[Close]
BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 6.550e-18
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDNKDWCVL 174
            FE FEHN+FEQ  INY NE LQQQFNQFVF++EQ+EY  EGI+W FVEFPDN+D   L
Sbjct:  474 FECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDL 531
[Close]
BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: A0A6H5LBZ3_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBZ3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.230e-17
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDNK 159
            FE FEHN+FEQ  INY NE LQQQFNQFVF++EQ+EY  EGI+W FVEFPDN+
Sbjct:  461 FECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQ 513
[Close]
BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Match: A0A446VQJ3_TRITD (Myosin motor domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446VQJ3_TRITD)

HSP 1 Score: 80.1 bits (196), Expect = 7.490e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFPDNKDWCVL 174
            FESF+HN+FEQF IN+ANEKLQQ FN+ VF++EQEEY+SE I W ++EF DN+D   L
Sbjct:  133 FESFKHNSFEQFCINFANEKLQQHFNEHVFKMEQEEYKSEKINWSYIEFIDNQDMLDL 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60895.13629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTZ2_9PHAE5.010e-2691.38Myosin motor domain-containing protein (Fragment) ... [more]
D7G635_ECTSI5.010e-2691.38Myosin-like protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CM17_9STRA1.640e-2282.76Myosin-like protein (Fragment) n=1 Tax=Tribonema m... [more]
A0A835YX87_9STRA3.270e-2079.31P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3Y0W6_HETAK2.560e-1882.69Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5KDB8_9PHAE6.530e-1870.69Myosin motor domain-containing protein n=2 Tax=Ect... [more]
A0A7S3PQR1_9STRA6.530e-1868.97Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
D8LTS1_ECTSI6.550e-1870.69Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5LBZ3_9PHAE4.230e-1773.58Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A446VQJ3_TRITD7.490e-1765.52Myosin motor domain-containing protein n=1 Tax=Tri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60895contigH-elongata_contig60895:3172..3345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue7.5e-22
Seed eggNOG ortholog2880.D7G635
KEGG koko:K10357
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930983.4614565-CDS-H-elongata_contig60895:3171..33451622930983.4614565-CDS-H-elongata_contig60895:3171..3345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60895 3172..3345 +
1691679650.4267182-CDS-H-elongata_contig60895:3171..33451691679650.4267182-CDS-H-elongata_contig60895:3171..3345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60895 3172..3345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60895.13629.1prot_H-elongata_contig60895.13629.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60895 3172..3345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60895.13629.1

>prot_H-elongata_contig60895.13629.1 ID=prot_H-elongata_contig60895.13629.1|Name=mRNA_H-elongata_contig60895.13629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
FESFEHNNFEQFLINYANEKLQQQFNQFVFEVEQEEYRSEGIKWDFVEFP
DNKDWCVL
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mRNA from alignment at H-elongata_contig60895:3172..3345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60895.13629.1 ID=mRNA_H-elongata_contig60895.13629.1|Name=mRNA_H-elongata_contig60895.13629.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig60895:3172..3345+ (Himanthalia elongata Himel1 dioecious)
TTCGAGTCGTTTGAGCACAACAACTTCGAGCAGTTCCTGATCAACTACGC
AAACGAGAAGCTACAACAGCAGTTCAACCAGTTCGTATTCGAGGTGGAAC
AAGAGGAGTACCGAAGCGAGGGCATCAAGTGGGACTTCGTCGAGTTTCCC
GACAATAAAGACTGGTGTGTTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig60895:3172..3345+

>mRNA_H-elongata_contig60895.13629.1 ID=mRNA_H-elongata_contig60895.13629.1|Name=mRNA_H-elongata_contig60895.13629.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig60895:3172..3345+ (Himanthalia elongata Himel1 dioecious)
TTCGAGTCGTTTGAGCACAACAACTTCGAGCAGTTCCTGATCAACTACGC
AAACGAGAAGCTACAACAGCAGTTCAACCAGTTCGTATTCGAGGTGGAAC
AAGAGGAGTACCGAAGCGAGGGCATCAAGTGGGACTTCGTCGAGTTTCCC
GACAATAAAGACTGGTGTGTTTTGTTCGAGTCGTTTGAGCACAACAACTT
CGAGCAGTTCCTGATCAACTACGCAAACGAGAAGCTACAACAGCAGTTCA
ACCAGTTCGTATTCGAGGTGGAACAAGAGGAGTACCGAAGCGAGGGCATC
AAGTGGGACTTCGTCGAGTTTCCCGACAATAAAGACTGGTGTGTTTTG
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