mRNA_H-elongata_contig60893.13628.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60893.13628.1
Unique NamemRNA_H-elongata_contig60893.13628.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: D8LN95_ECTSI (RPN1_RPN2_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN95_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 5.130e-117
Identity = 189/242 (78.10%), Postives = 210/242 (86.78%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDD---DGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
            MTMA+PG RVSL++KL GTKGDLGRWGHEFLRSLAGEIGQEY+ARR   + A++E  + G G EAM D    G+ADV DLM LVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLL+ PYVD+KNYERVCLYLLRMADYMSDPDDL     EMM+TAFELYRM+GK+CDAVRVAL MDD D LAQLLAECED  + QQMSF+M RHR+SYEHPDDDD+N+IIGNG+LSEHYLAL RDLDVM+AK
Sbjct:  195 MTMADPGSRVSLKYKLVGTKGDLGRWGHEFLRSLAGEIGQEYSARR---IGAVKEGAD-GEGDEAMADAAGGGDADVSDLMALVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLDLPYVDDKNYERVCLYLLRMADYMSDPDDLM----EMMTTAFELYRMRGKYCDAVRVALRMDDSDLLAQLLAECEDKGMTQQMSFIMARHRASYEHPDDDDVNEIIGNGSLSEHYLALARDLDVMEAK 428          
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A6H5K5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T2_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 1.970e-112
Identity = 189/241 (78.42%), Postives = 208/241 (86.31%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDD--DGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
            MTMA+PG RVSL++KLEGTKGDLGRWGHEFLRSLAGEIGQEY+ARR  I A  E A+  G G E M D    EADV DL+ LVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLL+ PYVD+KNYERVCLYLLRMADYMSDPDDL     EMM+TAFELYRM+GK+CDAVRVAL MDD D LAQLLAECED  + QQMSF+M RHR+SYEHPDDD++N+IIGNG+LSEHYLAL RDLDVM+AK
Sbjct:  191 MTMADPGSRVSLKYKLEGTKGDLGRWGHEFLRSLAGEIGQEYSARR--IGAVTEGAD--GEGDEEMADAAGAEADVSDLIALVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLDLPYVDDKNYERVCLYLLRMADYMSDPDDLM----EMMTTAFELYRMRGKYCDAVRVALRMDDSDLLAQLLAECEDKGMTQQMSFIMARHRASYEHPDDDEVNEIIGNGSLSEHYLALARDLDVMEAK 423          
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A836CK10_9STRA (26S proteasome non-ATPase regulatory subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK10_9STRA)

HSP 1 Score: 293 bits (751), Expect = 5.450e-90
Identity = 154/239 (64.44%), Postives = 187/239 (78.24%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
            MT A PG R SLR+KL G   +LG+WGHEFLR+LAG+IG+EY+AR         EA   G G EA  +D E DV DLM LVD+IVPFHLQHNAEAEAVDLLVEVQRL KLLE P+VD+KNYERVCLYLLRMADYMSDPDDL +    M+  A  LYR++G++ +A+RVAL +D QD +A+L AECED  VR+QM+ ++GRHRSSY HP+DD IN+++GN  LS+H+LAL RDLDVM+AK
Sbjct:  147 MTTAAPGARDSLRYKLAGNVKELGQWGHEFLRTLAGQIGEEYSARITG------EAPAGGEG-EAKPEDEEPDVSDLMVLVDEIVPFHLQHNAEAEAVDLLVEVQRLPKLLELPFVDDKNYERVCLYLLRMADYMSDPDDLAS----MLEVAHRLYRLRGRYVEALRVALRLDRQDEIAELFAECEDGAVRKQMALLLGRHRSSYTHPEDDAINELVGNAALSDHFLALARDLDVMEAK 374          
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7S2G4T1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4T1_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.270e-68
Identity = 124/240 (51.67%), Postives = 168/240 (70.00%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDD-RVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
            MTM  PG R +L++KL G + +LG WGHE++R+L+GE+G+EY AR    V A  + E       AMD    AD LDLM LVDDIVPFH++HNAEAEAVDLL+EVQ+L KL     +DE N+ER+CLYLLR AD+MSDPDDL    +EM+  ++ LY  Q    DA+RVAL + D++++ + +    D+  +++QM  M+ RHR ++E  +DDD+N+IIGN  LSEH+L L RDLDVM+ K
Sbjct:  111 MTMGVPGARETLKYKLVGNRSELGSWGHEYIRALSGEVGEEYNARLTAEVKAPADGE-------AMDVSAPADNLDLMALVDDIVPFHVKHNAEAEAVDLLIEVQQLAKLTAIDAIDENNFERICLYLLRSADFMSDPDDL----QEMLQVSYALYLAQKALVDALRVALRIGDEEKVKETMDAASDNVLLKKQMGLMLARHRVNFEEEEDDDLNEIIGNNKLSEHFLHLARDLDVMEPK 339          
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7S2V4A2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A2_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.730e-67
Identity = 130/253 (51.38%), Postives = 171/253 (67.59%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHP--------------YVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
            MTM +PG R SL +KLEG + DLG WGHEFLRSLAGEIG+EY++R+                 EA   D E DV DLMELVD+IVP+H+QHNAEAEAVDLLVEVQ+L KL                   VD+ N+ R+CLYLLR++ +M +P+DL    +EM+ TAFELYR   KF DA+RVA+ MDD+D++  L +EC D  V++QM++++ RH  S E  +D++I +IIGN  +SE YL L ++LDVM+AK
Sbjct:  134 MTMGKPGDRESLNYKLEGHRTDLGPWGHEFLRSLAGEIGEEYSSRQ-----------------EAAAADAEVDVSDLMELVDEIVPYHVQHNAEAEAVDLLVEVQQLHKLRPAAGQGQGEEGTGKLASVVDKDNHARLCLYLLRLSSFMPEPEDL----QEMLLTAFELYRTHDKFTDALRVAIKMDDRDKVIALFSECTDVLVKKQMAYILARHGYSVELMEDEEITNIIGNNQVSELYLKLAKELDVMEAK 365          
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7R9Z915_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z915_9STRA)

HSP 1 Score: 221 bits (563), Expect = 6.600e-67
Identity = 129/259 (49.81%), Postives = 166/259 (64.09%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEGTKG----------------DLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRV-RQQMSFMMGRHRSSYEHPDDDD---INDIIGNGTLSEHYLALGRDLDVMDAK 717
            MTM +   R SL+FKL   K                 +LG WGHEF+RSLAGEIGQEY AR +            G G    D D +A   DL+ +VD IVPFH+ HNAEAEAVDLL+EVQRLKKLL    +DE NY R+CLYL++ AD+MSDPDD      EM+ TAFEL+R Q ++ DA+RVAL M  +D + +L ++C DD + ++QM  ++ RHR +YE  DD+D   +N++IGN  LSE +L L +DLDVMDAK
Sbjct:  141 MTMGKHEERESLKFKLSAFKDYSALEARGESSRVDDDNLGSWGHEFVRSLAGEIGQEYNARVLD-----------GAG----DPDDDAPFSDLLSMVDVIVPFHVSHNAEAEAVDLLIEVQRLKKLLNLETIDENNYGRICLYLIKTADFMSDPDDYM----EMLETAFELFRKQSQYFDALRVALRMGKEDAIPELFSQCSDDALMKKQMCLLLARHRVNYEVEDDEDEDELNELIGNVQLSEQFLKLAQDLDVMDAK 380          
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A662YH41_9STRA (RPN1_RPN2_N domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH41_9STRA)

HSP 1 Score: 228 bits (580), Expect = 7.940e-67
Identity = 120/239 (50.21%), Postives = 161/239 (67.36%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
            MTMA+ G R SL+FKL G   DLG WGHEF+RSLAGE+G+EY AR                     +D  + DV DL+++VD IVPFH+QHNAE EA+D+L+EVQ+L KLL+ P +DEKNY+RVCLYLL  +DYMSD DDL      +++TAF L+    ++ DA+RVAL + + D + ++  +C+D  VR QM +++GR R  YE   D   ND+IGN  LS+ +L+L RDLDVM+AK
Sbjct:  122 MTMAKEGSRESLKFKLLGNSTDLGSWGHEFVRSLAGEVGEEYNARL------------------TAEDAVDPDVSDLLKVVDAIVPFHMQHNAEPEAIDILIEVQQLAKLLDSPDIDEKNYQRVCLYLLACSDYMSDVDDLV----NLLNTAFALFLRLEQYPDALRVALRLSNDDLVGEVFQKCQDVAVRNQMGYILGRQRCFYEDESDASANDLIGNAELSDKFLSLARDLDVMEAK 338          
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: W7TKW5_9STRA (Armadillo-like helical n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKW5_9STRA)

HSP 1 Score: 231 bits (589), Expect = 9.410e-67
Identity = 128/244 (52.46%), Postives = 163/244 (66.80%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMD-DQDRLAQLLAECEDDRVRQQMSFMMGRHRSSY----EHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
            MTMA PG R SLRFKLE    DLG WGHEF+RSLAGEIG+EY +R                       D    V DL+ LV DIVPFH+QHNA AEAVDLL+EVQRL +LLE   VDE NY+R+CLYLLR AD+M+DPDDL    +EM+ TA+ELYR QG + DA+RVA+ ++ D  R+ QL  E  D+  ++Q++FM+GR   +     E  D +++N+++GN  LSEHYL L +DLDV+D K
Sbjct:  152 MTMATPGSRESLRFKLESNAQDLGSWGHEFVRSLAGEIGEEYVSRTTA--------------------DAPQPVEDLLALVKDIVPFHIQHNAFAEAVDLLLEVQRLPQLLELTSVDEANYQRICLYLLRCADFMADPDDL----QEMLVTAYELYRKQGSYADALRVAIKLNNDMARIHQLFEEVSDETQKRQLAFMVGRSHVNLQYEGEEADAEEVNELVGNSKLSEHYLLLAKDLDVLDPK 371          
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7S2EH43_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EH43_TRICV)

HSP 1 Score: 224 bits (570), Expect = 4.520e-66
Identity = 127/259 (49.03%), Postives = 166/259 (64.09%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEGTKG----------------DLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRV-RQQMSFMMGRHRSSYEHPDD---DDINDIIGNGTLSEHYLALGRDLDVMDAK 717
            MTM +P  R SL+FKL   K                 +LG WGHEF+RSLAGEIGQEY  R +                +  D + +   +DL+ +VD IVPFH+ HNAEAEAVDLL+EVQRLKKLL+   +DE NY R+CLYL++ AD+MSDPDD      EM+ TAFEL+R Q ++ DA+RVAL M   D ++ L +EC DD + ++QM  ++ RHR ++E  DD   DD+N++IGN  LSE +L LG+DLDVMDAK
Sbjct:  141 MTMGKPEERESLKFKLTAFKDYDQLKKRGEAPKVDDDNLGSWGHEFVRSLAGEIGQEYNTRVL----------------DGADPESDVPFVDLLSMVDVIVPFHVSHNAEAEAVDLLIEVQRLKKLLDLDTIDENNYGRICLYLVKTADFMSDPDDYA----EMLETAFELFRKQKQYFDALRVALRMGKDDAVSDLFSECTDDLLMKKQMCLLLARHRVNFEVEDDENEDDLNELIGNAQLSEQFLKLGQDLDVMDAK 379          
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7S0GCY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCY1_9STRA)

HSP 1 Score: 218 bits (555), Expect = 4.550e-66
Identity = 121/256 (47.27%), Postives = 164/256 (64.06%), Query Frame = 1
Query:    1 MTMAEPGGRVSLRFKLEG----------------TKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDD-INDIIGNGTLSEHYLALGRDLDVMDAK 717
            MTM +   R SL+FKL G                T  ++G WGHEF+RSLAGEIGQEY AR                  +  D D ++   D++ +VD IVPFH+ HNAE+EAVDLL+EVQRLK+LL+   +D  NY R+CLYL++ AD+MSDPDDL+    EMM TA  LYR + +  DA+RVAL M + D +++L  ECEDD +++QM  ++ RH  SY++ DDDD +N++IGN  LSE +L + +DLDV +AK
Sbjct:   71 MTMGKIEERESLKFKLMGLADYALLKERKVEHSVTDDNMGSWGHEFVRSLAGEIGQEYNARVN----------------DGADPDEDSSFADILGMVDIIVPFHVSHNAESEAVDLLIEVQRLKRLLDIDTIDNTNYRRICLYLVKTADFMSDPDDLS----EMMETALSLYRKKNEHFDALRVALRMGNDDIISELFEECEDDLIKKQMCLLLARHNMSYQYEDDDDDLNELIGNVNLSEQFLKVAQDLDVTEAK 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN95_ECTSI5.130e-11778.10RPN1_RPN2_N domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K5T2_9PHAE1.970e-11278.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CK10_9STRA5.450e-9064.4426S proteasome non-ATPase regulatory subunit 2 n=1... [more]
A0A7S2G4T1_9STRA1.270e-6851.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2V4A2_9STRA2.730e-6751.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9Z915_9STRA6.600e-6749.81Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A662YH41_9STRA7.940e-6750.21RPN1_RPN2_N domain-containing protein (Fragment) n... [more]
W7TKW5_9STRA9.410e-6752.46Armadillo-like helical n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S2EH43_TRICV4.520e-6649.03Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S0GCY1_9STRA4.550e-6647.27Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60893contigH-elongata_contig60893:586..3598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.1
Seed ortholog evalue2e-97
Seed eggNOG ortholog2880.D8LN95
Preferred nameRPN1
KEGG koko:K03028
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0001101,GO:0002376,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009506,GO:0009628,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0010033,GO:0010498,GO:0014070,GO:0016020,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030163,GO:0031597,GO:0032182,GO:0032991,GO:0034515,GO:0042221,GO:0042493,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045087,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051726,GO:0055044,GO:0065007,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.regulation of protein catabolic process
EggNOG OGsCOG5110@1,KOG2005@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-04_004670.1
Exons4
Model size717
Cds size717
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60893.13628.1prot_H-elongata_contig60893.13628.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60893 586..3598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930983.3694036-CDS-H-elongata_contig60893:585..7181622930983.3694036-CDS-H-elongata_contig60893:585..718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60893 586..718 -
1691679650.384759-CDS-H-elongata_contig60893:585..7181691679650.384759-CDS-H-elongata_contig60893:585..718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60893 586..718 -
1622930983.384421-CDS-H-elongata_contig60893:1908..20541622930983.384421-CDS-H-elongata_contig60893:1908..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60893 1909..2054 -
1691679650.3951478-CDS-H-elongata_contig60893:1908..20541691679650.3951478-CDS-H-elongata_contig60893:1908..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60893 1909..2054 -
1622930983.4013352-CDS-H-elongata_contig60893:2583..27061622930983.4013352-CDS-H-elongata_contig60893:2583..2706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60893 2584..2706 -
1691679650.405335-CDS-H-elongata_contig60893:2583..27061691679650.405335-CDS-H-elongata_contig60893:2583..2706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60893 2584..2706 -
1622930983.4182208-CDS-H-elongata_contig60893:3283..35981622930983.4182208-CDS-H-elongata_contig60893:3283..3598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60893 3284..3598 -
1691679650.4151187-CDS-H-elongata_contig60893:3283..35981691679650.4151187-CDS-H-elongata_contig60893:3283..3598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60893 3284..3598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60893.13628.1

>prot_H-elongata_contig60893.13628.1 ID=prot_H-elongata_contig60893.13628.1|Name=mRNA_H-elongata_contig60893.13628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp
MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIV
AAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDL
LVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMS
TAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGR
HRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK
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mRNA from alignment at H-elongata_contig60893:586..3598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60893.13628.1 ID=mRNA_H-elongata_contig60893.13628.1|Name=mRNA_H-elongata_contig60893.13628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3013bp|location=Sequence derived from alignment at H-elongata_contig60893:586..3598- (Himanthalia elongata Himel1 dioecious)
ATGACCATGGCCGAGCCCGGGGGGCGAGTGAGTCTCCGCTTCAAGCTGGA GGGCACAAAGGGGGACCTGGGTCGGTGGGGACACGAGTTCCTGCGGTCCC TGGCCGGCGAAATTGGGCAGGAGTATACGGCTCGGCGGATGAAGATCGTG GCGGCGATGGAGGAGGCGGAGGAAGCGGGGATCGGGGTTGAAGCTATGGA TGACGACGGCGAGGCGGACGTTTTGGACCTCATGGAGCTGGTGGACGATA TCGTGCCGTTTCACCTACAGCACAACGCAGAGGCGGAGGCGGTGGACCTA CTCGTCGAAGTGCAGGTCGAGTGGGCCCCGTGCTCGAGAGTTGTGCAGCG CCTTTTCTCCCTTCCCTTTCCCCTCCTCTTCTCGAAACCCTATTACATTT TGTTTTTGTTTTTGTGTTTCATAGTCGAAAAAAAAAGCTCTTAAAAGAAG TAGAGGACAAAAAGTGTGGAAAACGGGGTTTGATTTGTCGAATGATCAAG CATCGCTACGCTTTGCTTAGCTACGCCGTTGAGGGAGGGGGCATGTAGGG GTAAAGGGTGATATTATGGCGTATGTATAATAATTTGTCATGTATTCGGA TGACGGGGAGGTAGGGGAGGGGAGGAATGTGATATGCTAAACCAACACGC AGGAAGCAAGGAATTCCGGCGGCTTTCATCTTTTTTTGAACATTTCATGA AGCGGAGCGGTGTTACTCGGAGCCCACGCTCAGACCGTGTGCGATTGCGC TCCAGGTTCGATGATATCCTTGCCCGTGTATTCGTACTCAATGTGCTACT GTTTGTCGTTTGATTGCATTTGCGCATAAACGCGGAATCCCTCCGTTATC CCCCCCCCTCTCCCCCTCTTCTCATCTCCCCCAAATTTGCAGCGCCTCAA GAAACTGCTGGAACACCCGTACGTTGACGAGAAGAACTACGAGCGGGTCT GCCTCTACCTGCTGCGGATGGCGGACTACATGTCCGATCCGGATGATCTA ACGGCAAGGATAAAAGTGCTACTGCTGTCGACTGTTCGCCACACTACATT TCGGTGCCACTTAAGCTATACTACACTATTACGGTATAGTTTGGTGATAA AATAGCCTTGTGACGATAATGAAAAGAAGGATGTGTATGGAGGGGGCGGG AAGCCACGGTCCCCGGGGACACCGAGGTCGAGGTAATGTCGGACGCGACA GTCGATCCGTAAAAGTCAAGCGGACTGGGATATGATGGGAAGGTCCATGC TGCCGCAAGTTTTTTATATATCTTCTTTACTATGTCTCCGAGCAACCAGC CTTATAAATATTTTTTATGGCTGCTTTATCTCTGTAGACCCCCAAGATTT ATCATACGATGTATTATGTTTTTTTCTCGCAGCTTCACTTACTAGTACGG TACGGTTTCTCTGACATGCGAGCTATCGTCCCAACCCATCATCGTCCTCT CTTTTCACCTCCCCCCCCCCTTCCTGAACGCCTGCGACGATCTTCAAACC CCTTCCTCTTCGATCTCTGGTTTTCCAACTTCCACACTACACAGGAAATG ATGTCTACGGCGTTCGAGCTGTACCGTATGCAGGGCAAGTTCTGCGACGC GGTCAGAGTGGCTCTCTGCATGGACGACCAAGACCGATTGGCGCAGTTGC TGGCGGAGTGCGAGGACGACCGCGTCCGCCAGCAGATGAGGTACCACTCA TAGACATTAGTTAACTCTCAGGTATACTATACTAGATACTACTAATCCAG GCGATGTTCATACGAGGTGGCCCTTCCGCAGATAAATATAACTTGGGTAC AGTAGCGGGTCAAGCTTACATCTTTGAAAAAATGGGGGATTTTGCGGTGC TATCCCTCCCCCGGGTTGAAGATATGATAGGCGGGGAGAAGGGTGGTCAA GTTCTTTTATGTCTTCACTGTAAGACGTGAATGGGATCCCTGACATTATA CCGTCGACCCGATTAACTTACTATTAGGGAACATGATTTATCACGTGTGG CGATTTTGTTCTTCAATGTAGTAATGTACACATTCGAACCTAACGATAGT TGATCCCTTGGGCTGCACCTCTCATGGTGCTAAGAAGTCGTGGATGTTTG GAGGGTTGTAATGAGTGCATGTTTAAAAAAAAAAAAATGTTGTTGGTTTA TTGTGCGCGTAAATGGGAGAGAAAACATGGCGGTGCCACACCGCTCTGAA GAGTCCAGGGACGGAGCCAAGATAATGTTGGACATCCCTTTCCTCTTACT TCGGCTGTAGTAATCTATTTATAGGAAAGGCTTTATCATTATACCCCCCC CCTCGCTTAAGGATGGTTATCAATTTTTGGCCGGTGTGACCGCAATGATC ATACGTAACATTCCCGATCCCCCATCCCCCATCCCCCCCTTGACCCGGCG GAAGCATATCGATATCAGCATACAAGCCTTGCCTGCAACGGTGGAGGGGA AAAGCCTATCTAAACAACCCCCCCCCCAAAAAACAAAACAAAACAAAAAA AACGCAGAAAAAATAAAGATACTTTTTGCGTTTGTACCTCAGTATATGAG GGCAGGGGCGTGCGTACCCAGAATAATGTGTTCCGCCCCCGCCTCCCCCT CTCCCTCCCCCTCCATCTCTCGAAGACAATACCGATAAATAGAGTTAAAC TCTACAAATATATGTAAATTACAAGGTCGCATCGTGTTGCGCTATCGCTT GTTATCCCTTTTTTTTTAAACACTCGCACTCTACACCAAGGAGTTGGTAT TGATAACGTCCTTTTAACTATTCTGCTCTTGTTTGTACCCACATCGTCAA TGGTGTTTCCACGCCTTCCCCCGTTCTTACCGTCCCGTCCCGTTCCTCTT CGTCCTTTGGTGCGAACACTGAAATGGTAGCTTCATGATGGGTCGCCACC GGTCATCGTACGAGCACCCGGACGACGATGATATCAACGATATCATCGGG AACGGAACCCTAAGCGAGCACTACCTCGCGCTAGGGAGGGATCTCGACGT TATGGATGCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig60893:586..3598-

>mRNA_H-elongata_contig60893.13628.1 ID=mRNA_H-elongata_contig60893.13628.1|Name=mRNA_H-elongata_contig60893.13628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1434bp|location=Sequence derived from alignment at H-elongata_contig60893:586..3598- (Himanthalia elongata Himel1 dioecious)
ATGACCATGGCCGAGCCCGGGGGGCGAGTGAGTCTCCGCTTCAAGCTGGA
GGGCACAAAGGGGGACCTGGGTCGGTGGGGACACGAGTTCCTGCGGTCCC
TGGCCGGCGAAATTGGGCAGGAGTATACGGCTCGGCGGATGAAGATCGTG
GCGGCGATGGAGGAGGCGGAGGAAGCGGGGATCGGGGTTGAAGCTATGGA
TGACGACGGCGAGGCGGACGTTTTGGACCTCATGGAGCTGGTGGACGATA
TCGTGCCGTTTCACCTACAGCACAACGCAGAGGCGGAGGCGGTGGACCTA
CTCGTCGAAGTGCAGATGACCATGGCCGAGCCCGGGGGGCGAGTGAGTCT
CCGCTTCAAGCTGGAGGGCACAAAGGGGGACCTGGGTCGGTGGGGACACG
AGTTCCTGCGGTCCCTGGCCGGCGAAATTGGGCAGGAGTATACGGCTCGG
CGGATGAAGATCGTGGCGGCGATGGAGGAGGCGGAGGAAGCGGGGATCGG
GGTTGAAGCTATGGATGACGACGGCGAGGCGGACGTTTTGGACCTCATGG
AGCTGGTGGACGATATCGTGCCGTTTCACCTACAGCACAACGCAGAGGCG
GAGGCGGTGGACCTACTCGTCGAAGTGCAGCGCCTCAAGAAACTGCTGGA
ACACCCGTACGTTGACGAGAAGAACTACGAGCGGGTCTGCCTCTACCTGC
TGCGGATGGCGGACTACATGTCCGATCCGGATGATCTAACGGCAAGGATA
AAACGCCTCAAGAAACTGCTGGAACACCCGTACGTTGACGAGAAGAACTA
CGAGCGGGTCTGCCTCTACCTGCTGCGGATGGCGGACTACATGTCCGATC
CGGATGATCTAACGGCAAGGATAAAAGAAATGATGTCTACGGCGTTCGAG
CTGTACCGTATGCAGGGCAAGTTCTGCGACGCGGTCAGAGTGGCTCTCTG
CATGGACGACCAAGACCGATTGGCGCAGTTGCTGGCGGAGTGCGAGGACG
ACCGCGTCCGCCAGCAGATGAGGAAATGATGTCTACGGCGTTCGAGCTGT
ACCGTATGCAGGGCAAGTTCTGCGACGCGGTCAGAGTGGCTCTCTGCATG
GACGACCAAGACCGATTGGCGCAGTTGCTGGCGGAGTGCGAGGACGACCG
CGTCCGCCAGCAGATGAGCTTCATGATGGGTCGCCACCGGTCATCGTACG
AGCACCCGGACGACGATGATATCAACGATATCATCGGGAACGGAACCCTA
AGCGAGCACTACCTCGCGCTAGGGAGGGATCTCGACGTTATGGATGCCAA
GCTTCATGATGGGTCGCCACCGGTCATCGTACGAGCACCCGGACGACGAT
GATATCAACGATATCATCGGGAACGGAACCCTAAGCGAGCACTACCTCGC
GCTAGGGAGGGATCTCGACGTTATGGATGCCAAG
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