prot_H-elongata_contig60871.13627.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60871.13627.1
Unique Nameprot_H-elongata_contig60871.13627.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length264
Homology
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A535S533_9CHLR (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535S533_9CHLR)

HSP 1 Score: 64.7 bits (156), Expect = 4.020e-8
Identity = 72/262 (27.48%), Postives = 106/262 (40.46%), Query Frame = 0
Query:   20 VESAGGTLLPVAGYGHLRLLVDQGNGTFTDSTRQLTLKHVAHVLDLGQHNLLSTKRLTQFFDAPMRVYPPAALIRPRRGGMPLFFRPLRPENGLLDIKMRRHVAAKSSLPKPPTAAALAVTK-----RGPRDIMKFHQVLGHPAEQITRNTVRMAGV----QLSGIWQPCVHCSESRVRRYAADRRAGRLL----IDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPE-----GLKIDVIRTDGG 263
            +E A  T +   G G++RL +        +   +LTL++V ++   G +NLLS   L +           A L R +     L              K+ R    +    KP   A  A T      +   +  K+HQ LGH   ++ +    +AG         I + C+     R       RRA R L     DL GP   TS GG  + M  IDD++R+KMV FLK KS+A +  +          G KI  I++D G
Sbjct:  341 LEMADRTTVEALGIGNVRLRL-------YNPEHELTLQNVLYLPQSGNNNLLSMHLLAEKGITAKMDNKNAQLYRGKTLQATL-------------RKINRLYVLEGHTIKPEETAMAATTNDIDDNKDNNNARKWHQRLGHAPARVIQAIPELAGTVSTTTTKTICESCIMGKFIRKPFQLLQRRATRPLELVHTDLCGPMETTSTGGARYFMTFIDDYSRYKMVYFLKKKSEAFDKFKEMKAYTENLCGHKILRIKSDNG 582          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA)

HSP 1 Score: 62.0 bits (149), Expect = 2.330e-7
Identity = 46/163 (28.22%), Postives = 73/163 (44.79%), Query Frame = 0
Query:  111 NGLLDIKMRRHVAAKSSLPKPPTAAALAVTKRGPRDIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHC------SESRVRRYAADRRAGRLL-IDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPE----GLKIDVIRTDG 262
            NG+ ++ MR     K +     TA A          +  +H+ L H  ++  +  +    +++    Q C  C       E    R    R  G+L+  DL GP H TSLGG+ + ++  DDF+R+++V FLK K D    L  F  E    G  ++ I +DG
Sbjct:  261 NGVYELHMRVCTPEKPAYVHVSTADA---------SLQLWHERLCHQNKRHVQQVLNNHAIKVHAKEQFCTGCVFGKHHREGFHSRKYRPRAPGKLIHADLCGPMHVTSLGGSKYFLIFKDDFSRYRLVFFLKRKDDVAQCLETFLSEARTAGNTVEYILSDG 414          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A1Y1K2V0_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K2V0_PHOPY)

HSP 1 Score: 61.6 bits (148), Expect = 4.070e-7
Identity = 36/131 (27.48%), Postives = 65/131 (49.62%), Query Frame = 0
Query:  145 RDIMKFHQVLGHPAEQITRNTVRMAGVQLSG---IWQPCVHCSESR----VRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALR---NFAPE--GLKIDVIRTDGG 263
            + I ++H++LGH         +   G++ +      + CV   + R    VR+  A R    + +DL GP   TS GG+ + +    D+++F++++FLK KS+ T  +    NF     G  + ++R DGG
Sbjct:  433 KSIQEWHEMLGHQNRVQVEKVLNRNGIEYTKQDFFCEACVKGKQHRKVFQVRQQRAQREGEVMNVDLCGPMEITSYGGSRYFICFTCDYSKFRLIKFLKEKSETTKGIAEVLNFVKNQCGRPLKMLRCDGG 563          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: UPI0010256B59 (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. 4DZ3-17B2 TaxID=2511990 RepID=UPI0010256B59)

HSP 1 Score: 58.2 bits (139), Expect = 9.540e-7
Identity = 39/132 (29.55%), Postives = 64/132 (48.48%), Query Frame = 0
Query:  146 DIMKFHQVLGHPAE---QITRNTVRMAGVQLSGIWQPCVHC----SESRVRRYAADRRAGRLLI--DLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAP-----EGLKIDVIRTDGG 263
            ++  +H  LGH ++   +I   +  + G   +   + C HC       +  ++ + RR  +L +  DL GP    SLGG ++ M  IDD++R   V FLKHK +A +  + F        G K+  +RTD G
Sbjct:   27 NVSLWHSRLGHMSKKGMEILSRSGYLPGFSFNDF-EFCEHCLYGKQTQQPHKHRSSRRDTQLALHRDLCGPMPNLSLGGASYFMTFIDDYSRKVWVYFLKHKDEAFSVFKTFVTLVENQSGKKLKCLRTDNG 157          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A5N6NGQ5_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NGQ5_9ASTR)

HSP 1 Score: 58.2 bits (139), Expect = 4.520e-6
Identity = 51/177 (28.81%), Postives = 79/177 (44.63%), Query Frame = 0
Query:  104 FRPLRPENGLLDIKMRRHVAAKSSLPKPPTAAALAVTKRGPRDIMKFHQVLGHPAEQITRNTVRMAGVQ----LSGIWQPCVHC--------SESRVRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPE-----GLKIDVIRTDGG 263
            F  LR E G L +K++R       + K  +A  + ++ +   +   +H  LGH   Q+  +  R   V+    L+   Q C  C        S S+  ++ A      L  DL GP    S GGN ++ L +DDF+R+  V  LK K +A +  + F  E     G  I ++RTD G
Sbjct:  141 FLKLRDEQGRLLMKVKRSPNHLYKI-KITSAKTVCLSSKLEEEAWIWHVRLGHVNIQLLESMARRGCVKGLPVLTHPRQVCEGCLLAKQTRGSFSKEAQWRAKEPLELLHADLCGPITPLSKGGNRYIFLIVDDFSRYMWVYLLKAKDEALSKFKIFKTEVEKETGFAIKMLRTDQG 316          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: UPI0010275709 (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. GF14B TaxID=2511982 RepID=UPI0010275709)

HSP 1 Score: 57.8 bits (138), Expect = 7.640e-6
Identity = 39/133 (29.32%), Postives = 64/133 (48.12%), Query Frame = 0
Query:  146 DIMKFHQVLGHPAE---QITRNTVRMAGVQLSGIWQPCVHC----SESRVRRYAADRRAGRLLI---DLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAP-----EGLKIDVIRTDGG 263
            ++  +H  LGH ++   +I   +  + G   +   + C HC       +  ++ + RR  +L +   DL GP    SLGG ++ M  IDD++R   V FLKHK +A +  + F        G K+  +RTD G
Sbjct:  442 NVSLWHSRLGHMSKKGMEILSRSGYLPGFSFNDF-EFCEHCLYGKQTQQPHKHRSSRRDTQLALVHSDLCGPMPNLSLGGASYFMTFIDDYSRKVWVYFLKHKDEAFSVFKTFVTLVENQSGKKLKCLRTDNG 573          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: UPI00137765F5 (DDE-type integrase/transposase/recombinase n=1 Tax=Weizmannia coagulans TaxID=1398 RepID=UPI00137765F5)

HSP 1 Score: 57.4 bits (137), Expect = 1.060e-5
Identity = 41/122 (33.61%), Postives = 59/122 (48.36%), Query Frame = 0
Query:  147 IMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAP-----EGLKIDVIRTDGG 263
            + K   VLG P  +++R +  + G    G      H S    +  A  R    L +DL+GP    SLGG  ++M+ +DDFTR+  V  L+ KSDA   +          + LKID IR+D G
Sbjct:  156 VSKHESVLGIP--KLSRMSNVVCGPCQLGKQTKAKHPS---TQASATSRPLELLHLDLMGPTRTESLGGKRYIMVVVDDFTRYTWVILLRSKSDAPEHIEALCTRLQNEKNLKIDRIRSDHG 272          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A5A7TCJ0_CUCME (Envelope-like protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TCJ0_CUCME)

HSP 1 Score: 57.0 bits (136), Expect = 1.370e-5
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0
Query:  184 SESRVRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFA-----PEGLKIDVIRTDGG 263
            S   ++R + +R    L +DL+GP    SLGG  +V++ +DDF+RF  VRFLK KSD      +        + +KI  IR+D G
Sbjct:  165 SHKSLKRCSTNRVLELLHMDLMGPMQTKSLGGKKYVLVAVDDFSRFTWVRFLKGKSDTPKVCISLCLILQREKEVKIVRIRSDHG 249          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A5A7TVE6_CUCME (Integrase catalytic domain-containing protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TVE6_CUCME)

HSP 1 Score: 56.6 bits (135), Expect = 1.920e-5
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 0
Query:  183 CSESRVRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATN-----ALRNFAPEGLKIDVIRTDGG 263
            CS +RV           L +DL+GP    SLGG  +V++ +DD++RF  VRFLK KSDA        L     +G KI  IR+D G
Sbjct:   86 CSTTRVHEL--------LHLDLMGPMQIESLGGKKYVLVVVDDYSRFTWVRFLKGKSDAVKICISLCLNLQREKGKKIIRIRSDHG 163          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A151SK87_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SK87_CAJCA)

HSP 1 Score: 56.6 bits (135), Expect = 2.010e-5
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 0
Query:  200 LLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAP-----EGLKIDVIRTDGG 263
            L +DL GP    SLGGNT+ ++ IDD++RF  V F+ HK +A  A R  +      + LKI  +R+D G
Sbjct:  714 LHMDLFGPSRTKSLGGNTYALVLIDDYSRFTWVAFISHKDNAFKAFRIISKRIQNEKDLKIKSLRSDHG 782          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A535S533_9CHLR4.020e-827.48DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A0V1HEX2_9BILA2.330e-728.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y1K2V0_PHOPY4.070e-727.48Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
UPI0010256B599.540e-729.55DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A5N6NGQ5_9ASTR4.520e-628.81Integrase catalytic domain-containing protein n=1 ... [more]
UPI00102757097.640e-629.32DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI00137765F51.060e-533.61DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A5A7TCJ0_CUCME1.370e-537.65Envelope-like protein n=2 Tax=Cucumis melo var. ma... [more]
A0A5A7TVE6_CUCME1.920e-540.70Integrase catalytic domain-containing protein n=2 ... [more]
A0A151SK87_CAJCA2.010e-542.03Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 189..263
e-value: 2.0E-6
score: 29.1
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 189..263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60871contigH-elongata_contig60871:2531..3346 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60871.13627.1mRNA_H-elongata_contig60871.13627.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60871 2153..3376 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60871.13627.1 ID=prot_H-elongata_contig60871.13627.1|Name=mRNA_H-elongata_contig60871.13627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MTQYPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNGTFTDS
TRQLTLKHVAHVLDLGQHNLLSTKRLTQFFDAPMRVYPPAALIRPRRGGM
PLFFRPLRPENGLLDIKMRRHVAAKSSLPKPPTAAALAVTKRGPRDIMKF
HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAADRRAGRL
LIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAP
EGLKIDVIRTDGG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf