mRNA_H-elongata_contig60871.13627.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60871.13627.1
Unique NamemRNA_H-elongata_contig60871.13627.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.200e-43
Identity = 147/430 (34.19%), Postives = 203/430 (47.21%), Query Frame = 1
Query:    1 WVNDSGATEHMTQYPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNGTFTDSTRQLTLKHVAHVLDLGQHNLLSTKRLTQFFDAPM--RVYPPAALIRPRRGGMPLFFRPLRPENGLLDIK--MRRHVAAKSSLPKPPTAAALAVTKRGPRDIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESR--------VRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPE----GLKIDV--IRTDGG*EW-HGQFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYGGRPTFDNIPPFGTAGYLR----RSKPGHKLAPRGASCIMLG 1200
            +V D+GAT HM     G   Y       RV  A G   P+ GYG + + +   +GT TD    L LK VAHV  L  +NL+S   LT  FD     +      L   R GG  ++F    P  G L ++   R H     +   P  A A +     P DI  FH   GH  E + R T +  G  L G  + C+ CS ++             A ++  R+ +DL G     SLGG  + ++  DD+TR+  V FLKHKSDA  A   +  E    G   DV  +R+D G E+  G+F     +  IK+E TP ++P+YNGVAERALGL+ D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  369 YVADTGATTHMFANSDGFVRYEECDR--RVRVAAGETFPIVGYGDVTVTLSSRDGT-TD----LLLKRVAHVPRLD-YNLVS---LTSLFDDGFETKTLNKHELELERGGGEVVYF----PRCGNLYVQNGFRTHTEHACAAIAPGNAKAPST----PVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 772          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.220e-43
Identity = 147/430 (34.19%), Postives = 203/430 (47.21%), Query Frame = 1
Query:    1 WVNDSGATEHMTQYPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNGTFTDSTRQLTLKHVAHVLDLGQHNLLSTKRLTQFFDAPM--RVYPPAALIRPRRGGMPLFFRPLRPENGLLDIK--MRRHVAAKSSLPKPPTAAALAVTKRGPRDIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESR--------VRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPE----GLKIDV--IRTDGG*EW-HGQFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYGGRPTFDNIPPFGTAGYLR----RSKPGHKLAPRGASCIMLG 1200
            +V D+GAT HM     G   Y       RV  A G   P+ GYG + + +   +GT TD    L LK VAHV  L  +NL+S   LT  FD     +      L   R GG  ++F    P  G L ++   R H     +   P  A A +     P DI  FH   GH  E + R T +  G  L G  + C+ CS ++             A ++  R+ +DL G     SLGG  + ++  DD+TR+  V FLKHKSDA  A   +  E    G   DV  +R+D G E+  G+F     +  IK+E TP ++P+YNGVAERALGL+ D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  382 YVADTGATTHMFANSDGFVRYEECDR--RVRVAAGETFPIVGYGDVTVTLSSRDGT-TD----LLLKRVAHVPRLD-YNLVS---LTSLFDDGFETKTLNKHELELERGGGEVVYF----PRCGNLYVQNGFRTHTEHACAAIAPGNAKAPST----PVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 785          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.250e-43
Identity = 147/430 (34.19%), Postives = 203/430 (47.21%), Query Frame = 1
Query:    1 WVNDSGATEHMTQYPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNGTFTDSTRQLTLKHVAHVLDLGQHNLLSTKRLTQFFDAPM--RVYPPAALIRPRRGGMPLFFRPLRPENGLLDIK--MRRHVAAKSSLPKPPTAAALAVTKRGPRDIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESR--------VRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPE----GLKIDV--IRTDGG*EW-HGQFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYGGRPTFDNIPPFGTAGYLR----RSKPGHKLAPRGASCIMLG 1200
            +V D+GAT HM     G   Y       RV  A G   P+ GYG + + +   +GT TD    L LK VAHV  L  +NL+S   LT  FD     +      L   R GG  ++F    P  G L ++   R H     +   P  A A +     P DI  FH   GH  E + R T +  G  L G  + C+ CS ++             A ++  R+ +DL G     SLGG  + ++  DD+TR+  V FLKHKSDA  A   +  E    G   DV  +R+D G E+  G+F     +  IK+E TP ++P+YNGVAERALGL+ D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  525 YVADTGATTHMFANSDGFVRYEECDR--RVRVAAGETFPIVGYGDVTVTLSSRDGT-TD----LLLKRVAHVPRLD-YNLVS---LTSLFDDGFETKTLNKHELELERGGGEVVYF----PRCGNLYVQNGFRTHTEHACAAIAPGNAKAPST----PVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 928          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 3.080e-43
Identity = 102/267 (38.20%), Postives = 142/267 (53.18%), Query Frame = 1
Query:  466 DIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYA--------ADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPE----GLK--IDVIRTD-GG*EWHGQFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYGGRPTFDNIPPFGTAGYLRRSKPGHKLAPRGASCIMLG 1200
            DI +FH +  H  E + R T +  G +L G    C  CS S+  R          +D++ GR+  DL G     S+GG  + ++  DDFTR   + FL++KSDA +A R F       G+   ++++R+D GG  + G F S  +EL IK+E TP Y+PQYNGVAER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G
Sbjct:   33 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG-EPRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVG 297          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 5.150e-43
Identity = 139/430 (32.33%), Postives = 207/430 (48.14%), Query Frame = 1
Query:    1 WVNDSGATEHMTQYPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNGTFTDSTRQLTLKHVAHVLDLGQHNLLSTKRLTQFFDAPM--RVYPPAALIRPRRGGMPLFFRPLRPENGLLDIKMRRHVAAKSSLPKPPTAAALA-VTKRGPR-----DIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSES--------RVRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAP----EGLK--IDVIRTDGG*EWHG-QFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYGGRPTFDNIPPFGTAGYLRRSKPGHKLAPRGASCIMLG 1200
            W  D+G   HMT   A ++D  P      V   GG    ++  G L L+         DS   + LK+V +  +LG +NL S    +  FD      +  P  ++   +G +       +  +G+L       +A+   L +      LA +T   P+     D+ +FH +  H  + + R T +  G +L G    C  CS +        R  +  +D++ GR+ +DL G     S+GG  + M+  DDFTR   + FLKHKSDA  A R+F      +G+   ++++R+D G E+ G +F S  +EL IK+E TP Y+PQYNGVAER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G
Sbjct:  525 WYADTGTAFHMTDSLACMKDLKPCHKS--VNGIGGVSCEISFSGTLELVF-----VTADSEFSMELKNVLYSPNLG-YNLFSP---SAEFDGESWNGLGGPDGVMTAFKGQVTF-----QNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG-EPRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 929          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 7.120e-43
Identity = 139/430 (32.33%), Postives = 207/430 (48.14%), Query Frame = 1
Query:    1 WVNDSGATEHMTQYPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNGTFTDSTRQLTLKHVAHVLDLGQHNLLSTKRLTQFFDAPM--RVYPPAALIRPRRGGMPLFFRPLRPENGLLDIKMRRHVAAKSSLPKPPTAAALA-VTKRGPR-----DIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSES--------RVRRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAP----EGLK--IDVIRTDGG*EWHG-QFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYGGRPTFDNIPPFGTAGYLRRSKPGHKLAPRGASCIMLG 1200
            W  D+G   HMT   A ++D  P      V   GG    ++  G L L+         DS   + LK+V +  +LG +NL S    +  FD      +  P  ++   +G +       +  +G+L       +A+   L +      LA +T   P+     D+ +FH +  H  + + R T +  G +L G    C  CS +        R  +  +D++ GR+ +DL G     S+GG  + M+  DDFTR   + FLKHKSDA  A R+F      +G+   ++++R+D G E+ G +F S  +EL IK+E TP Y+PQYNGVAER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G
Sbjct:  232 WYADTGTAFHMTDSLACMKDLKPCHKS--VNGIGGVSCEISFSGTLELVF-----VTADSEFSVELKNVLYSPNLG-YNLFSP---SAEFDGESWNGLGGPDGVMTAFKGQVTF-----QNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG-EPRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 636          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.590e-42
Identity = 141/430 (32.79%), Postives = 200/430 (46.51%), Query Frame = 1
Query:    1 WVNDSGATEHMTQYPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNGTFTDSTRQLTLKHVAHVLDLGQHNLLSTKRLTQFFDAPMRVYPPAALIRPRRGGMPLFFRPLRPEN--GLLDIKMRRHVAAKSSLPKPPTAAALA-VTKRGPR-----DIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYA--------ADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPEGLK------IDVIRTDGG*EWHG-QFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYGGRPTFDNIPPFGTAGYLRRSKPGHKLAPRGASCIMLG 1200
            W  D+G   HMT   + ++D  P      V   G     VA  G L L+         DS   + LK+V +  +LG +N+ S    +  FD      P         G M  F   +  +N  G+L       +A+   L +      LA +T   P+     DI +FH +  H  E + R T +  G +L G    C  CS S+  R          +D++ GR+ +DL G     S+GG  + M+  DDFTR   + FLK++SDA  A R F            ++++R+D G E+ G +F S  +EL IK+E TP Y+PQYNGVAER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G
Sbjct:  113 WYADTGTAFHMTDSLSCMKDLKPCHKS--VNGIGSVSCEVAFSGTLELVF-----VTADSEFSVELKNVLYSQNLG-YNIFSP---SAEFDGESWNGPGGP-----DGVMTAFNGQVTFQNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG-EPRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 517          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.020e-41
Identity = 102/271 (37.64%), Postives = 147/271 (54.24%), Query Frame = 1
Query:  466 DIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRV--------RRYAADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAP----EGLK--IDVIRTDGG*EWHG-QFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYG----GRPTFDNIPPFGTAGYLRRSKPGHKLAPRGASCIMLG 1200
            D+ +FH +  H  E + R T +  G++L+G    C  CS S+          +  +D++ GR+ +DL G     S+GG  + M+  DDFTR   + FLK KSDA +A R+F      +G+   ++++R+D G E+ G +F S  +EL IK+E TP Y+PQYNGVAER LGL+    +A       L   V   K+DRLWAEAM +AC+  N    S+     SPYE+W+G     RP      PF    Y R  +P  KL P+G +C  +G
Sbjct:  571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPY-----PFLKPAYCRWQRPS-KLLPKGEACFYVG 835          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 3.570e-41
Identity = 103/267 (38.58%), Postives = 144/267 (53.93%), Query Frame = 1
Query:  466 DIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYA--------ADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPE----GLK--IDVIRTDGG*EWHG-QFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYGGRPTFDNIPPFGTAGYLRRSKPGHKLAPRGASCIMLG 1200
            DI +FH +  H  E + R T +  G +L G    C  CS S+  R          +D++ GR+ +DL G     S+GG  + M+  DDFTR   + FL++KSDA +A R F       G+   ++++R+D G E+ G +F S  +EL IK+E TP Y+PQYNGVAER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G
Sbjct:  186 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG-EPRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 450          
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 6.850e-41
Identity = 102/267 (38.20%), Postives = 143/267 (53.56%), Query Frame = 1
Query:  466 DIMKFHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYA--------ADRRAGRLLIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAPE----GLK--IDVIRTDGG*EWHG-QFLSFLSELGIKRESTPPYTPQYNGVAERALGLLCDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWNR*TSSSLDSGTSPYELWYGGRPTFDNIPPFGTAGYLRRSKPGHKLAPRGASCIMLG 1200
            DI +FH +  H  E + R T +  G +L G    C  CS S+  R          +D++ GR+ +DL G     S+GG  + M+  DDFTR   + FL++KSDA +A R F       G+   ++++R+D G E+ G +F S  +EL IK+E TP Y+PQYNGVAER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL P+G SC  +G
Sbjct:  131 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYG-EPRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 395          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60871.13627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZQ8_9PHAE2.200e-4334.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.220e-4334.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.250e-4334.19Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KVR5_9PHAE3.080e-4338.20Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE5.150e-4332.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE7.120e-4332.33Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE2.590e-4232.79Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2M6_9PHAE2.020e-4137.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE3.570e-4138.58Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3Y0_9PHAE6.850e-4138.20Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60871contigH-elongata_contig60871:2153..3376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.0
Seed ortholog evalue4.6e-10
Seed eggNOG ortholog6334.EFV48956
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1200
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60871.13627.1prot_H-elongata_contig60871.13627.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60871 2531..3346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930983.2602472-UTR-H-elongata_contig60871:2152..25301622930983.2602472-UTR-H-elongata_contig60871:2152..2530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60871 2153..2530 -
1691679650.3447483-UTR-H-elongata_contig60871:2152..25301691679650.3447483-UTR-H-elongata_contig60871:2152..2530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60871 2153..2530 -
1622930983.319918-UTR-H-elongata_contig60871:3346..33761622930983.319918-UTR-H-elongata_contig60871:3346..3376Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60871 3347..3376 -
1691679650.3758538-UTR-H-elongata_contig60871:3346..33761691679650.3758538-UTR-H-elongata_contig60871:3346..3376Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60871 3347..3376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930983.2788873-CDS-H-elongata_contig60871:2530..27461622930983.2788873-CDS-H-elongata_contig60871:2530..2746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60871 2531..2746 -
1691679650.3581734-CDS-H-elongata_contig60871:2530..27461691679650.3581734-CDS-H-elongata_contig60871:2530..2746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60871 2531..2746 -
1622930983.2955172-CDS-H-elongata_contig60871:2770..33461622930983.2955172-CDS-H-elongata_contig60871:2770..3346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60871 2771..3346 -
1691679650.367982-CDS-H-elongata_contig60871:2770..33461691679650.367982-CDS-H-elongata_contig60871:2770..3346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60871 2771..3346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60871.13627.1

>prot_H-elongata_contig60871.13627.1 ID=prot_H-elongata_contig60871.13627.1|Name=mRNA_H-elongata_contig60871.13627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MTQYPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNGTFTDS
TRQLTLKHVAHVLDLGQHNLLSTKRLTQFFDAPMRVYPPAALIRPRRGGM
PLFFRPLRPENGLLDIKMRRHVAAKSSLPKPPTAAALAVTKRGPRDIMKF
HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAADRRAGRL
LIDLLGPFHETSLGGNTFVMLCIDDFTRFKMVRFLKHKSDATNALRNFAP
EGLKIDVIRTDGG*
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mRNA from alignment at H-elongata_contig60871:2153..3376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60871.13627.1 ID=mRNA_H-elongata_contig60871.13627.1|Name=mRNA_H-elongata_contig60871.13627.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1224bp|location=Sequence derived from alignment at H-elongata_contig60871:2153..3376- (Himanthalia elongata Himel1 dioecious)
TGGGTGAACGATAGCGGTGCGACAGAGCATATGACACAATACCCGGCGGG TCTAGAGGATTACACGCCGGCACCCGCGGGAGATCGAGTGGAGAGCGCCG GCGGTACCCTCCTTCCGGTGGCGGGATATGGACATCTCCGCCTCCTGGTG GACCAAGGCAACGGAACCTTCACCGACTCGACGCGCCAGCTCACGCTAAA GCACGTCGCACATGTGCTGGATCTTGGACAGCATAATCTGCTCTCTACGA AACGGCTGACGCAGTTTTTCGACGCGCCGATGCGCGTCTACCCACCAGCT GCATTGATCCGCCCCCGGCGAGGGGGCATGCCACTCTTTTTCCGCCCACT TCGACCAGAAAACGGCCTTTTGGATATCAAGATGCGCCGCCACGTCGCTG CGAAGAGCAGCCTACCCAAACCCCCAACAGCAGCAGCGCTCGCGGTGACG AAGCGCGGCCCGCGGGATATCATGAAATTCCACCAGGTGCTGGGGCACCC GGCAGAGCAGATCACGCGCAACACGGTCCGTATGGCGGGTGTGCAATTAA GCGGAATTTGGCAACCATGCGTACACTGCTCCGAATCTAGGGTGCGGCGA TACGCCGTGCCTAAATCCACGGAGAATTAGGCTGACAGGCGCGCGGGACG GCTGCTTATTGATCTCTTAGGACCCTTTCACGAGACGTCTCTCGGAGGAA ATACATTCGTCATGCTGTGCATTGACGACTTCACCCGCTTCAAAATGGTC CGTTTCCTGAAGCACAAGAGCGACGCCACGAATGCGTTAAGGAACTTCGC GCCCGAGGGCCTCAAGATAGACGTCATCCGCACGGACGGTGGGTGAGAAT GGCACGGCCAGTTCCTGTCTTTCCTGAGTGAGCTCGGAATCAAGCGCGAG TCCACACCCCCATATACCCCCCAATACAATGGCGTCGCGGAGCGCGCTCT GGGGCTACTGTGCGACAAGACCGTGGCCCTGCTTCGAGGTGTAATGGAGG GTAAGAGCGACCGTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATG TGGAACCGATGAACCTCCTCCTCCCTCGACAGCGGCACCTCGCCATATGA GCTTTGGTACGGCGGACGTCCGACATTCGACAACATCCCCCCATTCGGGA CCGCAGGATATCTACGACGATCGAAGCCGGGACACAAACTAGCCCCCCGC GGGGCGAGCTGCATCATGCTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig60871:2153..3376-

>mRNA_H-elongata_contig60871.13627.1 ID=mRNA_H-elongata_contig60871.13627.1|Name=mRNA_H-elongata_contig60871.13627.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig60871:2153..3376- (Himanthalia elongata Himel1 dioecious)
ATGACACAATACCCGGCGGGTCTAGAGGATTACACGCCGGCACCCGCGGG
AGATCGAGTGGAGAGCGCCGGCGGTACCCTCCTTCCGGTGGCGGGATATG
GACATCTCCGCCTCCTGGTGGACCAAGGCAACGGAACCTTCACCGACTCG
ACGCGCCAGCTCACGCTAAAGCACGTCGCACATGTGCTGGATCTTGGACA
GCATAATCTGCTCTCTACGAAACGGCTGACGCAGTTTTTCGACGCGCCGA
TGCGCGTCTACCCACCAGCTGCATTGATCCGCCCCCGGCGAGGGGGCATG
CCACTCTTTTTCCGCCCACTTCGACCAGAAAACGGCCTTTTGGATATCAA
GATGCGCCGCCACGTCGCTGCGAAGAGCAGCCTACCCAAACCCCCAACAG
CAGCAGCGCTCGCGGTGACGAAGCGCGGCCCGCGGGATATCATGAAATTC
CACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACGCGCAACACGGTCCG
TATGGCGGGTGTGCAATTAAGCGGAATTTGGCAACCATGCGTACACTGCT
CCGAATCTAGGGTGCGGCGATACGCCATGACACAATACCCGGCGGGTCTA
GAGGATTACACGCCGGCACCCGCGGGAGATCGAGTGGAGAGCGCCGGCGG
TACCCTCCTTCCGGTGGCGGGATATGGACATCTCCGCCTCCTGGTGGACC
AAGGCAACGGAACCTTCACCGACTCGACGCGCCAGCTCACGCTAAAGCAC
GTCGCACATGTGCTGGATCTTGGACAGCATAATCTGCTCTCTACGAAACG
GCTGACGCAGTTTTTCGACGCGCCGATGCGCGTCTACCCACCAGCTGCAT
TGATCCGCCCCCGGCGAGGGGGCATGCCACTCTTTTTCCGCCCACTTCGA
CCAGAAAACGGCCTTTTGGATATCAAGATGCGCCGCCACGTCGCTGCGAA
GAGCAGCCTACCCAAACCCCCAACAGCAGCAGCGCTCGCGGTGACGAAGC
GCGGCCCGCGGGATATCATGAAATTCCACCAGGTGCTGGGGCACCCGGCA
GAGCAGATCACGCGCAACACGGTCCGTATGGCGGGTGTGCAATTAAGCGG
AATTTGGCAACCATGCGTACACTGCTCCGAATCTAGGGTGCGGCGATACG
CCGCTGACAGGCGCGCGGGACGGCTGCTTATTGATCTCTTAGGACCCTTT
CACGAGACGTCTCTCGGAGGAAATACATTCGTCATGCTGTGCATTGACGA
CTTCACCCGCTTCAAAATGGTCCGTTTCCTGAAGCACAAGAGCGACGCCA
CGAATGCGTTAAGGAACTTCGCGCCCGAGGGCCTCAAGATAGACGTCATC
CGCACGGACGGTGGGTGAGCTGACAGGCGCGCGGGACGGCTGCTTATTGA
TCTCTTAGGACCCTTTCACGAGACGTCTCTCGGAGGAAATACATTCGTCA
TGCTGTGCATTGACGACTTCACCCGCTTCAAAATGGTCCGTTTCCTGAAG
CACAAGAGCGACGCCACGAATGCGTTAAGGAACTTCGCGCCCGAGGGCCT
CAAGATAGACGTCATCCGCACGGACGGTGGGTGA
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