mRNA_H-elongata_contig60817.13619.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A6H5KT04_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT04_9PHAE) HSP 1 Score: 214 bits (544), Expect = 6.300e-64 Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S +LGFLAAGV LGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSV R++AMKRD FG+GLATFG++AAAVAG YLAGLTGAQM+VIGGGVALSSSAFVLQLL+DRDD+GTRYGRACFGILLFQ
Sbjct: 363 SPVLGFLAAGVALGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVTRLMAMKRDVFGLGLATFGMSAAAVAGACYLAGLTGAQMVVIGGGVALSSSAFVLQLLRDRDDLGTRYGRACFGILLFQ 489
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: D8LS49_ECTSI (Similarity to sodium/hydrogen exchanger and potassium exchanger n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS49_ECTSI) HSP 1 Score: 214 bits (544), Expect = 7.780e-62 Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S +LGFLAAGV LGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSV R++AMKRD FG+GLATFGV+AAAVAG Y+AGLTGAQM+VIGGGVALSSSAFVLQLL+DRDD+GTRYGRACFGILLFQ
Sbjct: 331 SPVLGFLAAGVALGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVTRLMAMKRDVFGLGLATFGVSAAAVAGACYVAGLTGAQMVVIGGGVALSSSAFVLQLLRDRDDLGTRYGRACFGILLFQ 457
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A835Z5B4_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B4_9STRA) HSP 1 Score: 171 bits (434), Expect = 9.520e-48 Identity = 92/127 (72.44%), Postives = 105/127 (82.68%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S ILGFLA G +LGPN L +++DVKA EVLGE+GIVFFLFEMGLELS+QR+ AMK+D FG+GLA F +TA VA V AGL ++VIGGG+ALSSSAFVLQLLKDRDDMGTRYGRA FGILL Q
Sbjct: 16 SPILGFLATGTLLGPNGLRLIADVKATEVLGELGIVFFLFEMGLELSIQRLAAMKKDVFGLGLAQFFLTALGVAAVASRAGLGAPALVVIGGGIALSSSAFVLQLLKDRDDMGTRYGRASFGILLLQ 142
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A4D9D2S5_9STRA (Na_H_Exchanger domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2S5_9STRA) HSP 1 Score: 151 bits (382), Expect = 2.010e-43 Identity = 77/127 (60.63%), Postives = 101/127 (79.53%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S ILGFL G+VLGP LS+V+D+K E L E+GIVFFLFEMGLELSV+R+++M+RD FG+G A F ++A A+ + + GL G +V+GG +ALSSSAFVLQLL+D+D +GTR+GRA FG+LLFQ
Sbjct: 71 SPILGFLLTGMVLGPRGLSVVNDIKTTEALAELGIVFFLFEMGLELSVERLISMRRDVFGLGFAQFSLSAVAIFILSRMRGLPGPTSVVVGGALALSSSAFVLQLLRDKDSLGTRHGRASFGVLLFQ 197
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S2A6S9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6S9_TRICV) HSP 1 Score: 152 bits (383), Expect = 3.570e-43 Identity = 81/128 (63.28%), Postives = 101/128 (78.91%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLA-GLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S ILGFLAAG +LGPN L +S + E L E+GIVFFLFEMG+ELS +R+L+MK+D FG+GL+ F TA AVA VG +A GL ++V+GGG+ALSSSAFVLQLLKD+D + TR+GRA FG+LLFQ
Sbjct: 126 SPILGFLAAGTILGPNALGWISGIHTTETLAELGIVFFLFEMGIELSFERLLSMKKDVFGLGLSQFLTTAVAVAAVGRVAFGLPANALVVLGGGLALSSSAFVLQLLKDKDQLATRFGRASFGVLLFQ 253
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S3L4P7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4P7_9STRA) HSP 1 Score: 157 bits (397), Expect = 6.510e-42 Identity = 80/127 (62.99%), Postives = 103/127 (81.10%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S ILGFLA+G++LGPN ++S + E L E+GIVFFLFEMG+ELSV+R++ M++D FG+GL FG+TA AVAG G L GL G ++V+GGG+ALSSSAFVLQLLKD+D + TR+G+A FGILLFQ
Sbjct: 254 SPILGFLASGMLLGPNGCGLISGIHTTETLAELGIVFFLFEMGIELSVERLMQMRKDVFGLGLGQFGLTALAVAGFGSLFGLPGNALVVLGGGLALSSSAFVLQLLKDKDQLATRFGKASFGILLFQ 380
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S2MX89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX89_9STRA) HSP 1 Score: 152 bits (383), Expect = 7.110e-42 Identity = 78/127 (61.42%), Postives = 99/127 (77.95%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S ILGFLAAG++LGPN ++S + E L E+GIVFFLFEMG+ELS R+L+MK+D FG+GL+ F TA + GVG L GL G +V+GGG+ALSSSAFVLQLLKD+D + TR+G+A FG+LLFQ
Sbjct: 239 SPILGFLAAGMLLGPNGFGLISGIHTTETLAELGIVFFLFEMGIELSFNRLLSMKKDVFGLGLSQFLTTAITIGGVGRLCGLPGNAGVVLGGGLALSSSAFVLQLLKDKDQLATRFGKASFGVLLFQ 365
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S4VUL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VUL3_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.250e-41 Identity = 78/127 (61.42%), Postives = 99/127 (77.95%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S ILGFLAAG++LGPN ++S + E L E+GIVFFLFEMG+ELS R+++MK+D FG+GL+ F TA AV GVG GL G +V+GGG+ALSSSAFVLQLLKD+D + TR+G+A FG+LLFQ
Sbjct: 242 SPILGFLAAGMLLGPNGFGLISGIHTTETLAELGIVFFLFEMGIELSFDRLISMKKDVFGLGLSQFITTAIAVGGVGKFCGLPGNACVVLGGGLALSSSAFVLQLLKDKDQLATRFGKASFGVLLFQ 368
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S0Y7X8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7X8_9STRA) HSP 1 Score: 153 bits (386), Expect = 8.920e-41 Identity = 76/127 (59.84%), Postives = 104/127 (81.89%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S ILGFLA+G++LGPN +++D+ EVL E+GIVFFLFEMG+ELS++R+ +MKRD FG+GL+ F +A A+AGVG + GL ++V+GGG+ALSSSAFVLQLLKD++ + TR+G+A FG+LLFQ
Sbjct: 5 SPILGFLASGMLLGPNGFGLIADIHTTEVLAELGIVFFLFEMGIELSIERLTSMKRDVFGLGLSQFLASAIAIAGVGKVVGLPANAVVVLGGGLALSSSAFVLQLLKDKNQLATRFGKASFGVLLFQ 131
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A1E7FVM6_9STRA (Na_H_Exchanger-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVM6_9STRA) HSP 1 Score: 150 bits (380), Expect = 2.930e-40 Identity = 79/127 (62.20%), Postives = 101/127 (79.53%), Query Frame = 1
Query: 1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
S ILGFLA+G++LGPN ++ + A E L E+GIVFFLFEMGLELSV R+L+MKRD FG+GL+ F +A A+AGVG + L ++VIGGG+ALSSSAFVLQLLKD++ M TR+G+A FG+LLFQ
Sbjct: 39 SPILGFLASGMLLGPNGFGLIGGIHATETLAELGIVFFLFEMGLELSVARLLSMKRDVFGLGLSQFLCSALAIAGVGKILKLPANALVVIGGGLALSSSAFVLQLLKDKNQMATRFGKASFGVLLFQ 165 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60817.13619.1 >prot_H-elongata_contig60817.13619.1 ID=prot_H-elongata_contig60817.13619.1|Name=mRNA_H-elongata_contig60817.13619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRback to top mRNA from alignment at H-elongata_contig60817:1742..3069+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60817.13619.1 ID=mRNA_H-elongata_contig60817.13619.1|Name=mRNA_H-elongata_contig60817.13619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1328bp|location=Sequence derived from alignment at H-elongata_contig60817:1742..3069+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60817:1742..3069+ >mRNA_H-elongata_contig60817.13619.1 ID=mRNA_H-elongata_contig60817.13619.1|Name=mRNA_H-elongata_contig60817.13619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig60817:1742..3069+ (Himanthalia elongata Himel1 dioecious)back to top |