mRNA_H-elongata_contig60760.13614.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60760.13614.1
Unique NamemRNA_H-elongata_contig60760.13614.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: D8LHX2_ECTSI (Serine/threonine protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX2_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 9.050e-89
Identity = 176/367 (47.96%), Postives = 205/367 (55.86%), Query Frame = 1
Query:    1 GFPLGVRHIFGIFDGHGGDSVAEFCRSQLIDGIVKRLGERHSSSRVKRTCYNGST----------------EDTHEY------------------------GPLDIADCVRNMSREVDARAKGKFFTPTGRYVVPSVYDPLDVTPPPKEEKDDENGTGITSGMLIHNWHRSLKCYIESRASPFINRYCPCFCCPSSE-----------GRRKSKSPEAYDG------------TIDAD--ELSISTCGTT-SIIVVITDAFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVKHKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDVM 903
            G PLGVRHIF +FDGHGGDSVAE+CR+ L D IV+R+ E  + +    T    +T                E  +E+                         P   A CVR+  REVDA  KG FFTP GRYV P V DPLD +P     K     T  +SG       ++    +E R      R       PS++           G RK    E   G            T DAD      STCGTT S+IVV++DAFI+CCN GDSRAVLASEG S+ LS+DH+PDN  ER+RIEAAGG V+H RV+G LAVSRCIGDH FKSDP LPLERQMVVCDPEVTV  RSDEDEF+VMACDGVWDVM
Sbjct:   77 GCPLGVRHIFCLFDGHGGDSVAEYCRTYLADRIVQRIREAQALATTSATTTEAATIAQSAQARVPANGAGKEGINEHPGGGGGGRTFGDGERGSDGGTATAAPYMAAGCVRDACREVDAEVKGTFFTPAGRYVAPRVDDPLDPSP-----KQQPTRTSSSSGGFGEGADQARPMSMEERRLEKAKRK------PSTQANKSPARDGDAGARKENGGETNAGFAGGWGDGSGNATDDADGGPTRFSTCGTTTSLIVVVSDAFIICCNTGDSRAVLASEGASRQLSVDHKPDNRAERQRIEAAGGKVEHNRVEGKLAVSRCIGDHPFKSDPNLPLERQMVVCDPEVTVIKRSDEDEFVVMACDGVWDVM 432          
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: A0A024UCH5_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCH5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.400e-34
Identity = 65/119 (54.62%), Postives = 87/119 (73.11%), Query Frame = 1
Query:  547 GTTSIIVVITDAFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVKHKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDVM 903
            G T+I   +TD FIV  N+GDSR+VLA++G   P+S DH+P+N  ER+RIE AGG+V++ RV+G LAVSR +GD  +K  P LP   Q V  +P+V V  R+ EDEFL++ACDG+WDVM
Sbjct:  120 GCTAIAAFVTDLFIVVANSGDSRSVLATDGGVIPMSYDHKPNNTGERQRIENAGGSVRNNRVNGDLAVSRALGDFIYKQRPDLPAAAQQVSAEPDVKVAERTKEDEFLLLACDGIWDVM 238          
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: A0A7S2V4V3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.910e-34
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  547 GTTSIIVVITDAFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVKHKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDVM 903
            G T+I  VIT + IVC +AGDSR ++ + G  + LS DH+PD   ER RIE+AGG V  +RVDG LAV+R +GD  +K  P LP++RQ V C P+V  T RS  DE LV+ACDG+WDVM
Sbjct:  126 GCTAICAVITPSHIVCASAGDSRGIMVTSGQVRALSEDHKPDGAIERERIESAGGCVSMRRVDGDLAVARALGDFQYKDRPDLPVDRQKVTCVPDVRTTPRSSGDEVLVLACDGIWDVM 244          
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: A0A507CA16_9FUNG (PPM-type phosphatase domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CA16_9FUNG)

HSP 1 Score: 136 bits (343), Expect = 3.100e-34
Identity = 64/120 (53.33%), Postives = 89/120 (74.17%), Query Frame = 1
Query:  547 GTTSIIVVITD-AFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVKHKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDVM 903
            G T++  ++TD   ++C NAGDSRAVL+ +GV++P+S DH+P NP+E RRI AAGG V+  RV+G LA+SR IGD  FK  P+LP E Q+V  +PE+     +++DEFLV+ACDG+WD M
Sbjct:  126 GCTAVCAILTDDGKVICGNAGDSRAVLSVKGVAEPMSYDHKPVNPEESRRIVAAGGFVEFGRVNGNLALSRAIGDFDFKQSPQLPAEDQIVTVNPEIITRQMTEDDEFLVLACDGIWDCM 245          
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: A0A6G0WXM2_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXM2_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.230e-33
Identity = 64/119 (53.78%), Postives = 87/119 (73.11%), Query Frame = 1
Query:  547 GTTSIIVVITDAFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVKHKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDVM 903
            G T+I  VITD  I+  N+GDSR+VLAS+G   P+S DH+P+N  ER+RIE AGG+V++ RV+G LAVSR +GD  +K    L  E Q V  +PE+ V +R+ +DEFL++ACDG+WDVM
Sbjct:  120 GCTAIAAVITDTHIIVSNSGDSRSVLASDGGVVPMSFDHKPNNLPERKRIENAGGSVRNNRVNGDLAVSRALGDFVYKQRGDLKAEEQQVSAEPEIVVHSRTKDDEFLILACDGIWDVM 238          
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: A0A812LQD7_SYMPI (Ptc2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812LQD7_SYMPI)

HSP 1 Score: 135 bits (341), Expect = 3.720e-33
Identity = 103/321 (32.09%), Postives = 146/321 (45.48%), Query Frame = 1
Query:    1 GFPLGVRHIFGIFDGHGGDSVAEFCRSQLIDGIVKRL------GERHSSSRVKRTCYNG--STEDT-----HEYGPLDIADCVRNMSREVDARAKGKFFTPTGRYVVPSVYDPLDVTPPPKEEKDDENGTGITSGMLIHNWHRSLKCYIESRASPFINRYCPCFCCPSSEGRRKSKSPEAYDGTIDADELSISTCGTTSIIVVITDAFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVK--------HKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDV 900
            G  L    +FG+FDGHGG  VA FC+  L D I ++L      G R S   +     +   + +D      HE   L +   VR  ++ + A                             E++D +   G+ S  L+ N  +S       + S             +   R +SK+P        AD +     G T++ V+++D  IVC NAGDSRAVL   G    LS DH+P+   ER RIEAAGG ++        H RV+G L +SR IGD  +K  P L  ERQM+   P++   A + ED+F+ +ACDGVWDV
Sbjct:   47 GDELDELSLFGVFDGHGGAEVAAFCKQHLPDEIRRQLRKRLADGARLSGDVLGEALISAFHAMDDMLRSPEHERQLLALKQAVRPSAKGIGAAXXXXXXXXXXXXXXXXXXXXX------XEKEDGKKPRGVLS--LLSNSIQSTLEQARDKGSLSREEAKQVMMKMALLRRLESKAPSLSSDAAAADNV-----GCTAVCVLLSDTEIVCANAGDSRAVLCRGGSPVELSHDHKPNEAGERERIEAAGGRIEEIPVGARVHYRVNGNLNLSRSIGDLEYKKQPALGHERQMICSTPDIVKMALNKEDDFIALACDGVWDV 354          
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: A0A0N5A867_9BILA (PPM-type phosphatase domain-containing protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5A867_9BILA)

HSP 1 Score: 133 bits (334), Expect = 5.370e-33
Identity = 63/119 (52.94%), Postives = 87/119 (73.11%), Query Frame = 1
Query:  547 GTTSIIVVITDAFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVKHKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDVM 903
            G+T+++V+I D  I C N GDSRAV++  GV+KPLS+DH+P N  ER+RI AAGG V+  RV+G LA+SR +GD  FK+D     E Q++   P+VTV   +D+ EFL++ACDG+WDVM
Sbjct:  116 GSTAVVVIIKDNKIYCGNVGDSRAVVSVRGVAKPLSLDHKPVNANERQRIYAAGGYVELNRVNGNLALSRALGDFSFKTDLDRSAEEQIITAYPDVTVEKLTDDHEFLILACDGIWDVM 234          
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: A0A7S3W7P7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W7P7_9SPIT)

HSP 1 Score: 127 bits (319), Expect = 5.910e-33
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  547 GTTSIIVVITDAFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVKHKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDVM 903
            G T+ + +IT   I+C N+GDSR VL+ +G +  +S DH+PDN  ER RI++AGG V+  RV G L++SR +GD  +K    LP E+QM+ C PE+   AR D+DEFL++ACDG+WD +
Sbjct:   13 GCTACVAMITKDEIICANSGDSRCVLSRKGSAIEMSEDHKPDNAGERSRIQSAGGFVEEGRVKGVLSLSRALGDLEYKMSSHLPEEKQMITCVPEMRKQARKDDDEFLIIACDGIWDCL 131          
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: A0A812UGV4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UGV4_9DINO)

HSP 1 Score: 133 bits (334), Expect = 6.210e-33
Identity = 99/319 (31.03%), Postives = 147/319 (46.08%), Query Frame = 1
Query:    1 GFPLGVRHIFGIFDGHGGDSVAEFCRSQLIDGIVKRLGERHSSS---------RVKRTCYNGSTE----DTHEYGPLDIADCVRNMSREVDARAKGKFFTPTGRYVVPSVYDPLDVTPPPKEEKDD-ENGTGITSGMLIHNWHRSLKCYIESRASPFINRYCPCFCCPSSEGRRKSKSPEAYDGTIDADELSISTCGTTSIIVVITDAFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVK--------HKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGV 891
            G  L    +FG+FDGHGG  VA FC+  L D + ++L +R +               + ++   E      HE   L +    R  ++ +   +                           EEKDD +   G+ S  L+ N  +S       + S             +   R +SK+P     ++ AD  +    G T++ V+++D  IVC NAGDSRAVL  EG +  LS DH+P+  +ER RIEAAGG ++        H RV+G L +SR IGD  +K  P +  ERQM+   P++     S ED+F+V+ACDGV
Sbjct:   19 GEELDGLSLFGVFDGHGGAEVAAFCKQYLPDEVRRQLRKRLADGARLSGDVLGEALISSFHAMDEMLRSPEHERQLLALKQAARPSAKGIGGASSSXXXXXXXXXXXXXXXX---------EEKDDGKKPRGVLS--LLSNSIQSTLAQARDKGSLSREEAKQVMMKMALLRRLESKAP-----SLSADPAAADNVGCTAVCVLLSDTEIVCANAGDSRAVLCREGQAVELSQDHKPNEARERERIEAAGGRIEEIPVGARVHYRVNGNLNLSRSIGDLEYKKQPTMGHERQMICSTPDIVKMPLSKEDDFIVIACDGV 321          
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Match: A0A812RQN1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812RQN1_9DINO)

HSP 1 Score: 134 bits (337), Expect = 6.430e-33
Identity = 100/322 (31.06%), Postives = 145/322 (45.03%), Query Frame = 1
Query:    1 GFPLGVRHIFGIFDGHGGDSVAEFCRSQLIDGIVKRLGERHSSS---------RVKRTCYNGSTE----DTHEYGPLDIADCVRNMSREVDARAKGKFFTPTGRYVVPSVYDPLDVTPPPKEEKDD-ENGTGITSGMLIHNWHRSLKCYIESRASPFINRYCPCFCCPSSEGRRKSKSPEAYDGTIDADELSISTCGTTSIIVVITDAFIVCCNAGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVK--------HKRVDGCLAVSRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDV 900
            G  L    +FG+FDGHGG  VA FC+  L D + ++L +R +            V  + ++   +      HE   L +    R  S+ +   +                           EEKD+ +   G+ S  L+ N  +S       + S             +   R +SK+P        AD +     G T++ V++ D+ IVC NAGDSRAVL        LS DH+P+   ER RIEAAGG ++        H RV+G L +SR IGD  +K  P L  ERQM+   P++     S ED+F+++ACDGVWDV
Sbjct:   39 GDELDELSLFGVFDGHGGAEVAAFCKQFLPDEVRRQLRKRLADGARLSGDVLGEVLISSFHAMDDMLRSPEHERQLLALKQVARTTSKGIGGASSSSXXXXXXXXXXXXXXX--------XEEKDEGKKPHGVLS--LLSNSIQSTLAQARDKGSLSREEAKQVMMKMALLRRLESKAPSLSPDAAAADNV-----GCTAVCVLLNDSEIVCANAGDSRAVLCRASNPVELSQDHKPNEAGERERIEAAGGRIEEIPVGARVHYRVNGNLNLSRSIGDFEYKKQPSLGHERQMICSTPDIVKMPLSKEDDFVILACDGVWDV 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60760.13614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX2_ECTSI9.050e-8947.96Serine/threonine protein phosphatase n=1 Tax=Ectoc... [more]
A0A024UCH5_9STRA2.400e-3454.62PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S2V4V3_9STRA2.910e-3454.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A507CA16_9FUNG3.100e-3453.33PPM-type phosphatase domain-containing protein n=1... [more]
A0A6G0WXM2_9STRA1.230e-3353.78PPM-type phosphatase domain-containing protein n=1... [more]
A0A812LQD7_SYMPI3.720e-3332.09Ptc2 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A0N5A867_9BILA5.370e-3352.94PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S3W7P7_9SPIT5.910e-3348.74Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A812UGV4_9DINO6.210e-3331.03Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812RQN1_9DINO6.430e-3331.06Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60760contigH-elongata_contig60760:1118..3604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.0
Seed ortholog evalue1.2e-75
Seed eggNOG ortholog2880.D8LHX2
KEGG koko:K01090,ko:K04457,ko:K14803,ko:K17499,ko:K19705
KEGG Pathwayko04010,map04010
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Exons6
Model size903
Cds size903
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60760.13614.1prot_H-elongata_contig60760.13614.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60760 1118..3604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.9650867-CDS-H-elongata_contig60760:1117..13571622930981.9650867-CDS-H-elongata_contig60760:1117..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 1118..1357 +
1691679649.8306563-CDS-H-elongata_contig60760:1117..13571691679649.8306563-CDS-H-elongata_contig60760:1117..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 1118..1357 +
1622930981.9963999-CDS-H-elongata_contig60760:1659..17841622930981.9963999-CDS-H-elongata_contig60760:1659..1784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 1660..1784 +
1691679649.8447216-CDS-H-elongata_contig60760:1659..17841691679649.8447216-CDS-H-elongata_contig60760:1659..1784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 1660..1784 +
1622930982.0487294-CDS-H-elongata_contig60760:2158..24851622930982.0487294-CDS-H-elongata_contig60760:2158..2485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 2159..2485 +
1691679649.854421-CDS-H-elongata_contig60760:2158..24851691679649.854421-CDS-H-elongata_contig60760:2158..2485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 2159..2485 +
1622930982.068397-CDS-H-elongata_contig60760:2753..28161622930982.068397-CDS-H-elongata_contig60760:2753..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 2754..2816 +
1691679649.8667946-CDS-H-elongata_contig60760:2753..28161691679649.8667946-CDS-H-elongata_contig60760:2753..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 2754..2816 +
1622930982.0840917-CDS-H-elongata_contig60760:3171..32751622930982.0840917-CDS-H-elongata_contig60760:3171..3275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 3172..3275 +
1691679649.8751168-CDS-H-elongata_contig60760:3171..32751691679649.8751168-CDS-H-elongata_contig60760:3171..3275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 3172..3275 +
1622930982.1000898-CDS-H-elongata_contig60760:3560..36041622930982.1000898-CDS-H-elongata_contig60760:3560..3604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 3561..3604 +
1691679649.8833537-CDS-H-elongata_contig60760:3560..36041691679649.8833537-CDS-H-elongata_contig60760:3560..3604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60760 3561..3604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60760.13614.1

>prot_H-elongata_contig60760.13614.1 ID=prot_H-elongata_contig60760.13614.1|Name=mRNA_H-elongata_contig60760.13614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
GFPLGVRHIFGIFDGHGGDSVAEFCRSQLIDGIVKRLGERHSSSRVKRTC
YNGSTEDTHEYGPLDIADCVRNMSREVDARAKGKFFTPTGRYVVPSVYDP
LDVTPPPKEEKDDENGTGITSGMLIHNWHRSLKCYIESRASPFINRYCPC
FCCPSSEGRRKSKSPEAYDGTIDADELSISTCGTTSIIVVITDAFIVCCN
AGDSRAVLASEGVSKPLSIDHRPDNPQERRRIEAAGGTVKHKRVDGCLAV
SRCIGDHHFKSDPKLPLERQMVVCDPEVTVTARSDEDEFLVMACDGVWDV
M
back to top

mRNA from alignment at H-elongata_contig60760:1118..3604+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60760.13614.1 ID=mRNA_H-elongata_contig60760.13614.1|Name=mRNA_H-elongata_contig60760.13614.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2487bp|location=Sequence derived from alignment at H-elongata_contig60760:1118..3604+ (Himanthalia elongata Himel1 dioecious)
GGATTTCCTCTGGGCGTCCGACATATATTTGGTATTTTCGATGGCCACGG TGGTGACTCTGTTGCCGAGTTCTGCCGGAGCCAACTCATTGACGGTATAG TGAAGCGCCTTGGGGAACGACATTCATCTTCGAGAGTAAAAAGAACATGC TATAATGGCAGCACTGAAGATACCCATGAATATGGACCCTTGGATATAGC CGATTGCGTCCGAAACATGTCTCGAGAGGTCGACGCACGGGTGGGTTTGT GCTCCTTCAAAGTCTCCTTCGGAGCTTGCCGAGATATTTGAAAGCTCGGC TTGGATTAAATAAAGTGCGGCACAAAGAGTTTGTATGTTCCGTGGCTATA CTGTAGACACCCAAATCTTCTAACCTCGCCGGAAAGGCAGCTCACAATAG TTTAGTAGGAATTTGGCCAAGGTACTTATCACCCTGTGCATAACACCTCA AAACCTACCCAAAACCAACTCCACGCATCCCCGCCAAATCTCTGATACCT GCAATTCTTCGCTTCTACCCTACTTCTTCGTGAACGCTGAAGGCGAAGGG TAAATTCTTCACGCCGACCGGTAGATATGTCGTCCCTAGCGTTTACGATC CCCTCGACGTAACGCCTCCGCCAAAGGAAGAAAAAGACGACGAAAACGGC ACGGGAATCACCTCAGGGTAAGCGCATGCGGGTTACCTAATATATTGTAA ACTAGATGGTAACTGGACTCCTTGTTGAAGGATATTGAAAATGTGTAACA GGAAATCCAGTTGCCATCCTGCGCGAGCAAGGAGGGCACATGTGTAGACT CCATCTCGCTGTGCGCACGAAGCTGGAAGCACGAGGCAGGACTTGGGGAT ATGTTTACCAAGAATAATCGGTGATCAACGATGGTCGCCGCAAACCGCAA TAGTTCTAGTTCTACTGTTGTCGCGGTACACTTATTATGGAAATTTCCCT AGCACACAGGATAGACATGACTTGCGCACCATGAATCGAGCTGTACATGA AGATAATCTATCTTCTGAGCTGTGTCGAAATCTCCACAAAGCATGCTCAT TCACAACTGGCACCGCTCGCTCAAATGCTACATAGAATCACGAGCAAGTC CATTTATCAATCGCTACTGCCCCTGCTTTTGTTGCCCATCAAGCGAGGGT CGAAGGAAATCAAAGTCGCCGGAAGCCTATGATGGAACAATCGATGCCGA TGAATTATCGATTTCCACGTGCGGCACGACGTCGATCATCGTTGTCATTA CCGATGCTTTTATTGTATGCTGCAACGCGGGGGATTCCAGGGCGGTGCTC GCTTCAGAGGGTGTTTCAAAGCCCCTTTCGATAGACCACAGGCCGGACAA CCCACAGGAGCGAAGAAGGTGCGTCAGGACAGCCACAAATTGAAAGGAGG CAGAAAAAACAAGAGATTTCAGGATATCGATCCCTTCTTCACGTGAAAGA AGTTCAGAATCGTTTAACGTCGGGCTTTTATCCGTATCTAATACATGCTC CCCGCCTTCCCTGCCCCGCCCCCCTCTATCTGAAGTGTCGCCCCCTTTTG CTTGTCAACCCGTCATTACACGTGATATGTTGCCCGCTGTCACTCGAGAG CTCTTTTTTTCCTGTTGCGTGGTTGTCCATTGGTAGAATCGAGGCAGCTG GAGGGACGGTGAAGCACAAGCGCGTGGACGGCTGTCTAGCAGTGTCCAGG TACCTGACCCAAATTACCCAGTCTGTCGCCAGTCACGAAATAAATCCAGC AAAACAAGCGGTGGTGTACAATGATATACCCTAACATTTTGGTCACCATG CACCATAGGAGTGCGGTCAGATCACGATCATATCCCACAGCGAGGTGTTC TATCCCCTATTCTCGAGATAGCAGCGTATATTGACGACGCGGTGTAAAAT GGGCCGTCATGTCGGATTTCCGTTGATCAATGTTATGATTACTTGAGGAA GAACCAGGTCACGTATTGTAAGAGCGCTCTTTCAAAACTTCGCCCCGTCT CAGAAGACCGCGAAGATCCGTCTAGCATCGGTTTCCGGCTCGTGTCAAGC GCAGATGTATAGGTGATCATCATTTTAAGTCTGACCCAAAGTTACCCCTG GAGCGTCAAATGGTGGTGTGCGACCCAGAGGTGACGGTGACCGCTAGGAG CGATGAAGGTGGTGTGTACAAGAGCACATAATTAGTGATGTTTTTTTCAG TCCTTTTATTGTGCTGCTAGGACACTATTTATGAATTAGATCATACAGTA TATTTTTTAGAAAATATTACAAGTTCGCATTCTTCTTCGTGCGCATGGAA TTTCGCGTTCATTTGCACGGATGTAAAATACCGTAAATCTCATGAAATAC ATCTCGAGGATGTAGTTTTCTCATCTGGTTAAGAATCTAATATCAGTTCT ACATGATTAGTCGATAGCTGCACGCCTGCGTTTTCCCTCGCAGACGAGTT CCTCGTCATGGCTTGCGACGGCGTCTGGGATGTAATG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig60760:1118..3604+

>mRNA_H-elongata_contig60760.13614.1 ID=mRNA_H-elongata_contig60760.13614.1|Name=mRNA_H-elongata_contig60760.13614.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig60760:1118..3604+ (Himanthalia elongata Himel1 dioecious)
GGATTTCCTCTGGGCGTCCGACATATATTTGGTATTTTCGATGGCCACGG
TGGTGACTCTGTTGCCGAGTTCTGCCGGAGCCAACTCATTGACGGTATAG
TGAAGCGCCTTGGGGAACGACATTCATCTTCGAGAGTAAAAAGAACATGC
TATAATGGCAGCACTGAAGATACCCATGAATATGGACCCTTGGATATAGC
CGATTGCGTCCGAAACATGTCTCGAGAGGTCGACGCACGGGGATTTCCTC
TGGGCGTCCGACATATATTTGGTATTTTCGATGGCCACGGTGGTGACTCT
GTTGCCGAGTTCTGCCGGAGCCAACTCATTGACGGTATAGTGAAGCGCCT
TGGGGAACGACATTCATCTTCGAGAGTAAAAAGAACATGCTATAATGGCA
GCACTGAAGATACCCATGAATATGGACCCTTGGATATAGCCGATTGCGTC
CGAAACATGTCTCGAGAGGTCGACGCACGGGCGAAGGGTAAATTCTTCAC
GCCGACCGGTAGATATGTCGTCCCTAGCGTTTACGATCCCCTCGACGTAA
CGCCTCCGCCAAAGGAAGAAAAAGACGACGAAAACGGCACGGGAATCACC
TCAGGGCGAAGGGTAAATTCTTCACGCCGACCGGTAGATATGTCGTCCCT
AGCGTTTACGATCCCCTCGACGTAACGCCTCCGCCAAAGGAAGAAAAAGA
CGACGAAAACGGCACGGGAATCACCTCAGGCATGCTCATTCACAACTGGC
ACCGCTCGCTCAAATGCTACATAGAATCACGAGCAAGTCCATTTATCAAT
CGCTACTGCCCCTGCTTTTGTTGCCCATCAAGCGAGGGTCGAAGGAAATC
AAAGTCGCCGGAAGCCTATGATGGAACAATCGATGCCGATGAATTATCGA
TTTCCACGTGCGGCACGACGTCGATCATCGTTGTCATTACCGATGCTTTT
ATTGTATGCTGCAACGCGGGGGATTCCAGGGCGGTGCTCGCTTCAGAGGG
TGTTTCAAAGCCCCTTTCGATAGACCACAGGCCGGACAACCCACAGGAGC
GAAGAAGCATGCTCATTCACAACTGGCACCGCTCGCTCAAATGCTACATA
GAATCACGAGCAAGTCCATTTATCAATCGCTACTGCCCCTGCTTTTGTTG
CCCATCAAGCGAGGGTCGAAGGAAATCAAAGTCGCCGGAAGCCTATGATG
GAACAATCGATGCCGATGAATTATCGATTTCCACGTGCGGCACGACGTCG
ATCATCGTTGTCATTACCGATGCTTTTATTGTATGCTGCAACGCGGGGGA
TTCCAGGGCGGTGCTCGCTTCAGAGGGTGTTTCAAAGCCCCTTTCGATAG
ACCACAGGCCGGACAACCCACAGGAGCGAAGAAGAATCGAGGCAGCTGGA
GGGACGGTGAAGCACAAGCGCGTGGACGGCTGTCTAGCAGTGTCCAGAAT
CGAGGCAGCTGGAGGGACGGTGAAGCACAAGCGCGTGGACGGCTGTCTAG
CAGTGTCCAGATGTATAGGTGATCATCATTTTAAGTCTGACCCAAAGTTA
CCCCTGGAGCGTCAAATGGTGGTGTGCGACCCAGAGGTGACGGTGACCGC
TAGGAGCGATGAAGATGTATAGGTGATCATCATTTTAAGTCTGACCCAAA
GTTACCCCTGGAGCGTCAAATGGTGGTGTGCGACCCAGAGGTGACGGTGA
CCGCTAGGAGCGATGAAGACGAGTTCCTCGTCATGGCTTGCGACGGCGTC
TGGGATGTAATGACGAGTTCCTCGTCATGGCTTGCGACGGCGTCTGGGAT
GTAATG
back to top