mRNA_H-elongata_contig117407.1361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117407.1361.1
Unique NamemRNA_H-elongata_contig117407.1361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.260e-23
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 DPLDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELLVALKNTWGVVEEWQRS 225
            +PLD WR   +++PLLAALAR +LAIP+SQAQSERVFS+AG   T TR+RL  ENVELLV L+N WGVV+EW++S
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKS 556          
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.650e-22
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 DPLDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELLVALKNTWGVVEEWQRS 225
            DPLDWWR+    FP LA LAR +LAIPA+QA+SER+FS AG I T+ RN L+   VELLV L+++W +VEEW++S
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQS 296          
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: A0A2G9RVU8_LITCT (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RVU8_LITCT)

HSP 1 Score: 79.3 bits (194), Expect = 2.320e-16
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 DPLDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELLVALK 189
            DPL WW+ N  K+P +A +ARC LA+P S   SERVFS+AG I T TR+ LS +NV++LV LK
Sbjct:  153 DPLTWWKSNECKYPHIATMARCYLAVPGSSVPSERVFSTAGDIVTATRSTLSPDNVDILVFLK 215          
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: A0A151I7P1_9HYME (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7P1_9HYME)

HSP 1 Score: 75.1 bits (183), Expect = 4.500e-16
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 DPLDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELLVAL 186
            D +DWW+ N  +FP+LAA+AR  LAIPA+Q  SER+FS AG I T TR++L  ENVE L  L
Sbjct:   16 DIIDWWKCNVTRFPILAAVARQYLAIPATQVSSERLFSDAGNIVTATRSKLIPENVEKLCFL 77          
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.230e-16
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 PLDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELLVALKNT 195
            PL+WWR+   ++P LA+LAR +L IPA QAQSERVFSSAG + T+TR R+  ENV L+V L+NT
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F)

HSP 1 Score: 76.6 bits (187), Expect = 9.300e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    7 LDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELL 177
            + WW+ N V+FPLLAA+AR LLAIPA+Q  SER+FS+AG I  + R+RL SENVE+L
Sbjct:  104 ISWWKANIVRFPLLAAVARNLLAIPATQVTSERLFSTAGNIVNEKRSRLCSENVEML 160          
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.970e-15
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   37 FPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELLVALKNTWGVVEEWQRS 225
            FP LA LAR +LAIPA+QA+SER+FS AG I T+ RN L+   VELLV L+++W +VEEW++S
Sbjct:  154 FPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQS 216          
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: A0A3N0YQ94_ANAGA (Zinc finger BED domain-containing protein 1 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YQ94_ANAGA)

HSP 1 Score: 77.8 bits (190), Expect = 2.870e-15
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 DPLDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELLVALKNTWGVV 207
            DPL WW+ N  K+P +A +ARC LA+P S   SERVFS+AG I T  R+ LS +NV++LV LK  + ++
Sbjct:   95 DPLTWWKSNECKYPHIAKMARCYLAVPGSSVPSERVFSTAGDIVTAKRSTLSLDNVDILVFLKKIFEII 163          
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: UPI0020143E0A (zinc finger BED domain-containing protein 4-like n=4 Tax=Euteleostomi TaxID=117571 RepID=UPI0020143E0A)

HSP 1 Score: 76.6 bits (187), Expect = 9.970e-15
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 DPLDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELLVALK 189
            DPL WW+ N  K+P +A +ARC LA+P S   SERVFS+AG I T  R+ LS +NV++LV LK
Sbjct:  270 DPLTWWKSNECKYPHIAKMARCYLAVPGSSVPSERVFSTAGDIVTAKRSTLSPDNVDILVFLK 332          
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA)

HSP 1 Score: 70.5 bits (171), Expect = 2.260e-14
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 DPLDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNRLSSENVELLVAL 186
            DPL WW+ +   +P++AAL +  LAI AS A SERVFS+AG I T  RN LS+ENV LL+ L
Sbjct:    1 DPLKWWKAHENLYPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLIFL 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117407.1361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI1.260e-2366.67Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JWI1_9PHAE1.650e-2260.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A2G9RVU8_LITCT2.320e-1657.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Li... [more]
A0A151I7P1_9HYME4.500e-1658.06Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A6H5JHP9_9PHAE7.230e-1660.94Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI000EAB1B8F9.300e-1663.16zinc finger BED domain-containing protein 1-like n... [more]
A0A6H5JPB0_9PHAE1.970e-1560.32Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A3N0YQ94_ANAGA2.870e-1550.72Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
UPI0020143E0A9.970e-1555.56zinc finger BED domain-containing protein 4-like n... [more]
E2BS40_HARSA2.260e-1456.45Zinc finger BED domain-containing protein 1 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117407contigH-elongata_contig117407:450..692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929684.3223672-CDS-H-elongata_contig117407:449..6921622929684.3223672-CDS-H-elongata_contig117407:449..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117407 450..692 +
1691679118.4171197-CDS-H-elongata_contig117407:449..6921691679118.4171197-CDS-H-elongata_contig117407:449..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117407 450..692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117407.1361.1prot_H-elongata_contig117407.1361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117407 450..692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117407.1361.1

>prot_H-elongata_contig117407.1361.1 ID=prot_H-elongata_contig117407.1361.1|Name=mRNA_H-elongata_contig117407.1361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
DPLDWWRLNTVKFPLLAALARCLLAIPASQAQSERVFSSAGQIFTQTRNR
LSSENVELLVALKNTWGVVEEWQRSKATPV*
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mRNA from alignment at H-elongata_contig117407:450..692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117407.1361.1 ID=mRNA_H-elongata_contig117407.1361.1|Name=mRNA_H-elongata_contig117407.1361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig117407:450..692+ (Himanthalia elongata Himel1 dioecious)
GACCCGCTGGATTGGTGGCGATTGAACACCGTCAAGTTCCCACTGCTAGC GGCACTTGCCCGGTGCCTTTTGGCAATCCCGGCATCGCAGGCGCAGTCAG AGCGTGTGTTTTCGAGCGCTGGGCAGATTTTCACCCAAACCCGCAACCGC CTGTCATCGGAAAATGTCGAGCTTTTGGTCGCGTTGAAGAATACCTGGGG TGTAGTGGAGGAATGGCAGCGGTCTAAGGCCACCCCTGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig117407:450..692+

>mRNA_H-elongata_contig117407.1361.1 ID=mRNA_H-elongata_contig117407.1361.1|Name=mRNA_H-elongata_contig117407.1361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig117407:450..692+ (Himanthalia elongata Himel1 dioecious)
GACCCGCTGGATTGGTGGCGATTGAACACCGTCAAGTTCCCACTGCTAGC
GGCACTTGCCCGGTGCCTTTTGGCAATCCCGGCATCGCAGGCGCAGTCAG
AGCGTGTGTTTTCGAGCGCTGGGCAGATTTTCACCCAAACCCGCAACCGC
CTGTCATCGGAAAATGTCGAGCTTTTGGTCGCGTTGAAGAATACCTGGGG
TGTAGTGGAGGAATGGCAGCGGTCTAAGGCCACCCCTGTGTGAGACCCGC
TGGATTGGTGGCGATTGAACACCGTCAAGTTCCCACTGCTAGCGGCACTT
GCCCGGTGCCTTTTGGCAATCCCGGCATCGCAGGCGCAGTCAGAGCGTGT
GTTTTCGAGCGCTGGGCAGATTTTCACCCAAACCCGCAACCGCCTGTCAT
CGGAAAATGTCGAGCTTTTGGTCGCGTTGAAGAATACCTGGGGTGTAGTG
GAGGAATGGCAGCGGTCTAAGGCCACCCCTGTGTGA
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