mRNA_H-elongata_contig60652.13606.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60652.13606.1
Unique NamemRNA_H-elongata_contig60652.13606.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.640e-51
Identity = 106/295 (35.93%), Postives = 172/295 (58.31%), Query Frame = 1
Query:    1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            VFK K D+ G+I K K RLVA+GF+Q  G+ Y E+ SPT   A  ++V+++      +    D++ A+++++++ E+ +++P       ++V RL K++Y L  A   + K    EL+  GF+ S +DP V R+++   VV ++ ++VDD+L A  TK   E  V AL    P K LGE  ++LGC  +RDR A T++  Q  YI+++ ERF + +TS IP+       S ++  ++  E E    + +RE+VG+LMW A+ TR DIS     +A+ +  P  +HW+ AQK L Y
Sbjct:  939 VFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPA-------SLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNY 1225          
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 4.820e-51
Identity = 105/295 (35.59%), Postives = 167/295 (56.61%), Query Frame = 1
Query:    1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            VFK   D+  +I K K RLVA+GF+Q  G+ Y E+ SPT   A  ++V+++      +    D++ A+++++++ E+ ++LP        +V RL K++Y L  A   + K    EL+  GF+ S +DP V R+++   VV ++ ++VDD+L A  T    E  V AL    P K LGE  ++LGC  +RDR A T++  Q  YI+++ ERF V +TS IP+       S ++  ++  E E    + +RE+VG+LMW A  TR DIS     +A+ +  P  +HW+ AQK L Y
Sbjct:   32 VFKWNADETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSL-AEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNY 318          
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 5.460e-51
Identity = 109/294 (37.07%), Postives = 160/294 (54.42%), Query Frame = 1
Query:    4 FKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            F  K +K+G+I  +K RLVA+GF Q+  + Y  SSSP P  A IK++L++    G      DV  AY  A ++EE+ ++LP    D   ++ +  +AIY L  +G  W       L   GF+  +ADP VFR ++   VV++IV+YVDD+L+A + + D E+ + +L   FP K LGE  ++ GC + RD  A TL+  Q  YI +M ERF V  TS IP+  G     K        E EE  +   RE +G++MW +T +R D+S     +A+   +P   HW   QK L Y
Sbjct:  788 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1073          
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 5.750e-51
Identity = 109/294 (37.07%), Postives = 160/294 (54.42%), Query Frame = 1
Query:    4 FKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            F  K +K+G+I  +K RLVA+GF Q+  + Y  SSSP P  A IK++L++    G      DV  AY  A ++EE+ ++LP    D   ++ +  +AIY L  +G  W       L   GF+  +ADP VFR ++   VV++IV+YVDD+L+A + + D E+ + +L   FP K LGE  ++ GC + RD  A TL+  Q  YI +M ERF V  TS IP+  G     K        E EE  +   RE +G++MW +T +R D+S     +A+   +P   HW   QK L Y
Sbjct: 1167 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1452          
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 5.790e-51
Identity = 109/294 (37.07%), Postives = 160/294 (54.42%), Query Frame = 1
Query:    4 FKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            F  K +K+G+I  +K RLVA+GF Q+  + Y  SSSP P  A IK++L++    G      DV  AY  A ++EE+ ++LP    D   ++ +  +AIY L  +G  W       L   GF+  +ADP VFR ++   VV++IV+YVDD+L+A + + D E+ + +L   FP K LGE  ++ GC + RD  A TL+  Q  YI +M ERF V  TS IP+  G     K        E EE  +   RE +G++MW +T +R D+S     +A+   +P   HW   QK L Y
Sbjct: 1187 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1472          
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 5.840e-51
Identity = 109/294 (37.07%), Postives = 160/294 (54.42%), Query Frame = 1
Query:    4 FKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            F  K +K+G+I  +K RLVA+GF Q+  + Y  SSSP P  A IK++L++    G      DV  AY  A ++EE+ ++LP    D   ++ +  +AIY L  +G  W       L   GF+  +ADP VFR ++   VV++IV+YVDD+L+A + + D E+ + +L   FP K LGE  ++ GC + RD  A TL+  Q  YI +M ERF V  TS IP+  G     K        E EE  +   RE +G++MW +T +R D+S     +A+   +P   HW   QK L Y
Sbjct: 1330 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1615          
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.840e-50
Identity = 105/295 (35.59%), Postives = 171/295 (57.97%), Query Frame = 1
Query:    1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            VFK K D+ G+I K K RLVA+GF+Q  G+ Y E+ SPT   A  ++V+++      +    D++ A+++++++ E+ +++P       ++V RL K++Y L  A   + K    EL+  GF+ S +DP V  +++   VV ++ ++VDD+L A  TK   E  V AL    P K LGE  ++LGC  +RDR A T++  Q  YI+++ ERF + +TS IP+       S ++  ++  E E    + +RE+VG+LMW A+ TR DIS     +A+ +  P  +HW+ AQK L Y
Sbjct:  729 VFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPA-------SLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNY 1015          
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI)

HSP 1 Score: 180 bits (456), Expect = 2.140e-50
Identity = 106/299 (35.45%), Postives = 172/299 (57.53%), Query Frame = 1
Query:    1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQ--VGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTS--IIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            VFK K+D +G I+++K RLVA+GF Q  G+ Y+E+ SP   +  +++V++++A    +  Q+DV  A+L  +++EE+ ++ PE +    K+  V +L+K+IY L  A   W   F   + + GF+ +  D  ++  I  G+  +++V+YVDD+L+A+       Q    L   F +K +GEASY +G  + RDR+   L   Q  YI  + ERF + K S  I+P   G K  S +  P+ + E ++M QI Y  IVG+LM+A T TR  IS     L ++  +PG  HW+ A+K L+Y
Sbjct:   13 VFKTKLDSNGNIERHKARLVAKGFTQKDGVDYKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRY 309          
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 4.740e-50
Identity = 108/295 (36.61%), Postives = 170/295 (57.63%), Query Frame = 1
Query:    1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            VFK K D+ G+I K K RLVA+GF+Q  G+ Y E+ SPT   A  ++V+++      +    D++ A+++++++ E+ ++LP        +V RL K++Y L  A   + K    EL+  GF+ S +DP V R+++   VV ++ ++VDD+L A  TK   E  V AL    P K LGE  ++LGC  +RDR A T++  Q  YI+++ ERF V +TS IP+       S ++  ++  E E    + +RE+VG+LMW A  TR DIS     +A+ +  P  +HW+ AQK L Y
Sbjct:  498 VFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNY 784          
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 186 bits (472), Expect = 5.060e-50
Identity = 108/299 (36.12%), Postives = 172/299 (57.53%), Query Frame = 1
Query:    1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQ--VGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSI--IPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
            VFK K D  G I+++K RLVA+GF Q +GI++ E+ SP   +   +++++++A    +  Q+DV  A+L  ++EEEI +  PE + ++ K+  V RL+K+IY L  A   W K F   + + GF  +  D  V+  ++ G   + +++YVDD+L+AS+  +  +     L S F +K LGEASY LG  + RDR    L   Q  YI  + +RFG+   +   +P + G K L+K+  P+T+ E  EM  I Y  +VG+LM+A   TR D+S     L++F  +PG  HW   +K L+Y
Sbjct:  297 VFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRY 593          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZH7_9PHAE1.640e-5135.93Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQD0_9PHAE4.820e-5135.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE5.460e-5137.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE5.750e-5137.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE5.790e-5137.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.840e-5137.07Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5L3I1_9PHAE1.840e-5035.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4V1T029_9SPHI2.140e-5035.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE4.740e-5036.61Integrase catalytic domain-containing protein n=2 ... [more]
A0A2P6SMQ0_ROSCH5.060e-5036.12Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60652contigH-elongata_contig60652:4..888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue6.3e-14
Seed eggNOG ortholog164328.Phyra85923
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size885
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.622786-UTR-H-elongata_contig60652:3..5671622930980.622786-UTR-H-elongata_contig60652:3..567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60652 4..567 +
1691679649.4076817-UTR-H-elongata_contig60652:3..5671691679649.4076817-UTR-H-elongata_contig60652:3..567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60652 4..567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.6382666-CDS-H-elongata_contig60652:567..8881622930980.6382666-CDS-H-elongata_contig60652:567..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60652 568..888 +
1691679649.4220722-CDS-H-elongata_contig60652:567..8881691679649.4220722-CDS-H-elongata_contig60652:567..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60652 568..888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60652.13606.1prot_H-elongata_contig60652.13606.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60652 568..888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60652.13606.1

>prot_H-elongata_contig60652.13606.1 ID=prot_H-elongata_contig60652.13606.1|Name=mRNA_H-elongata_contig60652.13606.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTD
AEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRV
AQKALQY
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mRNA from alignment at H-elongata_contig60652:4..888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60652.13606.1 ID=mRNA_H-elongata_contig60652.13606.1|Name=mRNA_H-elongata_contig60652.13606.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at H-elongata_contig60652:4..888+ (Himanthalia elongata Himel1 dioecious)
GTGTTCAAGCGCAAAATCGACAAGGATGGAAGGATCAAGAAGTATAAATG TCGCCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGG AATCATCCTCTCCGACTCCTGTGCAGGCCAGGATTAAGATGGTACTCAGC ATTATCGCGGCTCTCGGCTGGAAAGCGCGGCAGCTGGACGTCGATATGGC CTACCTGGAGGCCGATGTGGAGGAGGAGATCTGCGTTGAGCTCCCGGAGG CATACCGTGACTCCAAGAAGCAAGTCGGCCGACTAAGGAAGGCAATCTAC AGACTCGTCCACGCCGGGCTGCTGTGGTAAAAAACGTTCGGGATCGAGCT CGAGGCGAAGGGTTTTCAGATATCTCAAGCCGACCCATACGTGTTCCGGT GGATTCTCCATGGGACAGTGGTAGTCGTCATCGTGGTCTACGTCGACGAC CTGCTGATTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGGC CCTGTGCTCCTGTTTCCCCATCAAGTATCTGGGGGAGGCTTCATATTACC TGGGATGCCACGTCATGCGGGACCGAAACGCCAGGACACTGAAGTTCGAT CAGCATCAGTACATACAGACTATGGCGGAACGTTTTGGCGTGACGAAGAC CAGCATCATCCCGTCTGCGGCAGGAGGAAAAGCCCTTTCGAAATCAGACA GCCCGCAAACGGACGCAGAGTTTGAAGAAATGCGCCAGATTATCTACCGA GAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCTCGACAT TTCATTGGTTGCGCATCAACTGGCGAAATTCAACGACAGCCCGGGACCGA CACACTGGAGGGTAGCCCAGAAAGCGCTGCAATAT
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Coding sequence (CDS) from alignment at H-elongata_contig60652:4..888+

>mRNA_H-elongata_contig60652.13606.1 ID=mRNA_H-elongata_contig60652.13606.1|Name=mRNA_H-elongata_contig60652.13606.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig60652:4..888+ (Himanthalia elongata Himel1 dioecious)
ATGCGGGACCGAAACGCCAGGACACTGAAGTTCGATCAGCATCAGTACAT
ACAGACTATGGCGGAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGT
CTGCGGCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGAC
GCAGAGTTTGAAGAAATGCGCCAGATTATCTACCGAGAAATCGTTGGGGC
CCTAATGTGGGCAGCGACGATGACCAGGCTCGACATTTCATTGGTTGCGC
ATCAACTGGCGAAATTCAACGACAGCCCGGGACCGACACACTGGAGGGTA
GCCCAGAAAGCGCTGCAATATATGCGGGACCGAAACGCCAGGACACTGAA
GTTCGATCAGCATCAGTACATACAGACTATGGCGGAACGTTTTGGCGTGA
CGAAGACCAGCATCATCCCGTCTGCGGCAGGAGGAAAAGCCCTTTCGAAA
TCAGACAGCCCGCAAACGGACGCAGAGTTTGAAGAAATGCGCCAGATTAT
CTACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGC
TCGACATTTCATTGGTTGCGCATCAACTGGCGAAATTCAACGACAGCCCG
GGACCGACACACTGGAGGGTAGCCCAGAAAGCGCTGCAATAT
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