prot_H-elongata_contig60646.13604.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig60646.13604.1
Unique Name	prot_H-elongata_contig60646.13604.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	176

Homology

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BLAST of mRNA_H-elongata_contig60646.13604.1 vs. uniprot
Match: A0A6H5L3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V4_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 6.600e-39
Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 0

Query:    8 VRWRGPPGYHEASPRLPPDSIDEVRQRLLSSPEYDKLVNRVGVNNPF---GDKNVAGVTEEEAEDPAAFRLLWSTVRFAVNVGIVLVAVVLCVSSGKLPPSILAPFESVATSISGSPIEQVLATWPWETTLVLRFAAEGLVALIFSAVADRLVVAPAIHMWGQFRLWYISS 175
             R +GPP +  ++    P+ IDEVRQRL++S +YD++V R+  N+PF   GDK  A    +E E+     +L  TVR  V+V + LV VVL V+  KLPP +L    S AT+I GSP+E VL   PWE  +VL++AA+G VA++ S V DRLVV+PAIH W Q +L  +SS
Sbjct:   43 ARHQGPPRHLMSTAGNSPEDIDEVRQRLMASSKYDEMVGRIEGNSPFLEAGDKGSA----KEGEESPILPVLRQTVRVVVDVAVGLVPVVLVVTYAKLPPPLLEALGSAATAIKGSPLEPVLEALPWEPVVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 209

[Close]

BLAST of mRNA_H-elongata_contig60646.13604.1 vs. uniprot
Match: D8LQA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA5_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.340e-37
Identity = 76/154 (49.35%), Postives = 101/154 (65.58%), Query Frame = 0

Query:   25 PDSIDEVRQRLLSSPEYDKLVNRVGVNNPF---GDKNVAGVTEEEAEDPAAFRLLWSTVRFAVNVGIVLVAVVLCVSSGKLPPSILAPFESVATSISGSPIEQVLATWPWETTLVLRFAAEGLVALIFSAVADRLVVAPAIHMWGQFRLWYISS 175
            P+ IDEVRQRL++S  Y+++V R+  N+PF   GDK  A    +E E+     +L  TVR  V+V I LV VVL V+  KLPP +L    S AT+I GSP+E VL   PWE  +VL++AA+G VA++ S V DRLVV+PAIH W Q +L  +SS
Sbjct:    8 PEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSA----KEGEESPILPVLRQTVRVVVDVAITLVPVVLVVTYAKLPPPLLEALGSAATTIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 157

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig60646.13604.1 vs. uniprot

BLAST of mRNA_H-elongata_contig60646.13604.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L3V4_9PHAE	6.600e-39	46.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LQA5_ECTSI	1.340e-37	49.35	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 82..100
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..81
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 135..158
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 101..134
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 159..175

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig60646	contig	H-elongata_contig60646:1190..2359 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig60646.13604.1	mRNA_H-elongata_contig60646.13604.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig60646 536..2359 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig60646.13604.1 ID=prot_H-elongata_contig60646.13604.1|Name=mRNA_H-elongata_contig60646.13604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
RRPRTIRVRWRGPPGYHEASPRLPPDSIDEVRQRLLSSPEYDKLVNRVGV
NNPFGDKNVAGVTEEEAEDPAAFRLLWSTVRFAVNVGIVLVAVVLCVSSG
KLPPSILAPFESVATSISGSPIEQVLATWPWETTLVLRFAAEGLVALIFS
AVADRLVVAPAIHMWGQFRLWYISS*