mRNA_H-elongata_contig60625.13603.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60625.13603.1
Unique NamemRNA_H-elongata_contig60625.13603.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: D8LTN8_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN8_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.400e-15
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGIQ 108
            QIWIKTLTGRKQQYSFEPDN VSMVKQ+LQEKEGIQ
Sbjct:    2 QIWIKTLTGRKQQYSFEPDNQVSMVKQSLQEKEGIQ 37
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BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: A0A836CG90_9STRA (Ubiquitin-related domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG90_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.940e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGIQ 108
            QIWIKTLTGRKQQ++FEP + V +VKQALQEKEGIQ
Sbjct:    2 QIWIKTLTGRKQQFNFEPSDQVLLVKQALQEKEGIQ 37
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BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: B8BQ41_THAPS (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ41_THAPS)

HSP 1 Score: 56.6 bits (135), Expect = 1.400e-9
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGIQ 108
            QI+IKTLTGRKQ ++FEP+N V  VKQALQEKEGIQ
Sbjct:    1 QIFIKTLTGRKQAFNFEPENQVLAVKQALQEKEGIQ 36
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BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: M4BXH5_HYAAE (Ubiquitin-like domain-containing protein n=25 Tax=Oomycota TaxID=4762 RepID=M4BXH5_HYAAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.630e-9
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGIQ 108
            QI IKTLTGRKQ ++FEPDN +  VKQALQEKEGIQ
Sbjct:    2 QIQIKTLTGRKQTFNFEPDNTILHVKQALQEKEGIQ 37
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BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: A0A7S1V0J3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V0J3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.810e-9
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGIQ 108
            QI+IKTLTGRKQ ++FEP+N V  VKQALQEKEGIQ
Sbjct:   34 QIFIKTLTGRKQAFNFEPENQVLAVKQALQEKEGIQ 69
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BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: A0A0G4F771_VITBC (Ubiquitin-like domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F771_VITBC)

HSP 1 Score: 55.5 bits (132), Expect = 3.820e-9
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGI 105
            QI IKTLTGRKQ ++FEPDN +  VKQALQEKEGI
Sbjct:    2 QILIKTLTGRKQNFNFEPDNTILQVKQALQEKEGI 36
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BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: A0A7S3L110_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L110_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.130e-9
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGIQ 108
            QI+IKTLTGRKQ ++FEP+N V  +KQALQEKEGIQ
Sbjct:   47 QIFIKTLTGRKQAFNFEPENQVLAIKQALQEKEGIQ 82
[Close]
BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: A0A125YX02_TOXGV (Ubiquitin family protein n=16 Tax=Sarcocystidae TaxID=5809 RepID=A0A125YX02_TOXGV)

HSP 1 Score: 55.1 bits (131), Expect = 5.300e-9
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGI 105
            QI IKTLTGRKQ ++FEPDN V  VKQALQEKEGI
Sbjct:    2 QILIKTLTGRKQSFNFEPDNTVLHVKQALQEKEGI 36
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BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: A0A7S2KTK1_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2KTK1_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 6.240e-9
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGIQ 108
            QI+IKTLTGRK  ++FEPDN V  VK+ALQEKEGIQ
Sbjct:   26 QIFIKTLTGRKTNFNFEPDNTVRQVKEALQEKEGIQ 61
[Close]
BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Match: A0A1R2CSB4_9CILI (Ubiquitin-like domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CSB4_9CILI)

HSP 1 Score: 54.3 bits (129), Expect = 9.940e-9
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGI 105
            QI +KTLTG+KQ  +FEPDN VS VKQALQEKEGI
Sbjct:    2 QIIVKTLTGKKQPMNFEPDNTVSQVKQALQEKEGI 36
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60625.13603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN8_ECTSI4.400e-1594.44Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A836CG90_9STRA1.940e-1180.56Ubiquitin-related domain-containing protein n=1 Ta... [more]
B8BQ41_THAPS1.400e-977.78Ubiquitin-like domain-containing protein (Fragment... [more]
M4BXH5_HYAAE2.630e-977.78Ubiquitin-like domain-containing protein n=25 Tax=... [more]
A0A7S1V0J3_9STRA2.810e-977.78Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A0G4F771_VITBC3.820e-977.14Ubiquitin-like domain-containing protein n=1 Tax=V... [more]
A0A7S3L110_9STRA5.130e-975.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A125YX02_TOXGV5.300e-980.00Ubiquitin family protein n=16 Tax=Sarcocystidae Ta... [more]
A0A7S2KTK1_9DINO6.240e-975.00Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A1R2CSB4_9CILI9.940e-977.14Ubiquitin-like domain-containing protein n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60625contigH-elongata_contig60625:2094..2495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog2880.D8LTN8
Preferred nameUBA52
KEGG koko:K02927,ko:K02977
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000122,GO:0000165,GO:0000184,GO:0000187,GO:0000209,GO:0000715,GO:0000731,GO:0000956,GO:0001666,GO:0001932,GO:0001934,GO:0002181,GO:0002218,GO:0002221,GO:0002224,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002755,GO:0002756,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006296,GO:0006297,GO:0006301,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006625,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006974,GO:0006996,GO:0007031,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007249,GO:0007254,GO:0007267,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009636,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016032,GO:0016043,GO:0016055,GO:0016070,GO:0016071,GO:0016192,GO:0016197,GO:0016310,GO:0016567,GO:0016579,GO:0017015,GO:0017085,GO:0018130,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019867,GO:0019941,GO:0019985,GO:0022607,GO:0022625,GO:0022626,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030139,GO:0030163,GO:0030512,GO:0030522,GO:0030659,GO:0030666,GO:0030867,GO:0031090,GO:0031098,GO:0031145,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031347,GO:0031349,GO:0031386,GO:0031399,GO:0031401,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0033674,GO:0033683,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035556,GO:0035666,GO:0035872,GO:0036211,GO:0036293,GO:0036294,GO:0036297,GO:0042175,GO:0042221,GO:0042276,GO:0042325,GO:0042327,GO:0042769,GO:0042886,GO:0042981,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043487,GO:0043488,GO:0043549,GO:0043574,GO:0043603,GO:0043604,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044766,GO:0045047,GO:0045088,GO:0045089,GO:0045184,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046700,GO:0046794,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051603,GO:0051606,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0055085,GO:0060255,GO:0060548,GO:0061013,GO:0061024,GO:0061418,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070482,GO:0070498,GO:0070555,GO:0070646,GO:0070647,GO:0070727,GO:0070848,GO:0070887,GO:0070911,GO:0070972,GO:0070987,GO:0071310,GO:0071345,GO:0071347,GO:0071363,GO:0071453,GO:0071456,GO:0071495,GO:0071559,GO:0071560,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071900,GO:0071902,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0072662,GO:0072663,GO:0075733,GO:0080090,GO:0080134,GO:0090092,GO:0090101,GO:0090150,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097708,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:0198738,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902531,GO:1902533,GO:1902579,GO:1902679,GO:1902680,GO:1903311,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903845,GO:1905114,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
Ec32 ortholog descriptionUbiquitin
Ec32 orthologEc-28_003390.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size112
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.4209237-CDS-H-elongata_contig60625:2094..21721622930980.4209237-CDS-H-elongata_contig60625:2094..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60625 2095..2172 -
1691679649.3119996-CDS-H-elongata_contig60625:2094..21721691679649.3119996-CDS-H-elongata_contig60625:2094..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60625 2095..2172 -
1622930980.4363377-CDS-H-elongata_contig60625:2462..24951622930980.4363377-CDS-H-elongata_contig60625:2462..2495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60625 2463..2495 -
1691679649.3292458-CDS-H-elongata_contig60625:2462..24951691679649.3292458-CDS-H-elongata_contig60625:2462..2495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60625 2463..2495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60625.13603.1prot_H-elongata_contig60625.13603.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60625 2095..2495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60625.13603.1

>prot_H-elongata_contig60625.13603.1 ID=prot_H-elongata_contig60625.13603.1|Name=mRNA_H-elongata_contig60625.13603.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
QIWIKTLTGRKQQYSFEPDNMVSMVKQALQEKEGIQA
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mRNA from alignment at H-elongata_contig60625:2094..2495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60625.13603.1 ID=mRNA_H-elongata_contig60625.13603.1|Name=mRNA_H-elongata_contig60625.13603.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig60625:2094..2495- (Himanthalia elongata Himel1 dioecious)
CAGATCTGGATCAAGACCTTGACCGGCCGCAAAGTGAGGTTCCGACCGTT
TTCTTGTAGACGACGTGCTCAGACGTTCGAGCACCAACAACAGTCATCCC
ATGCCTCTGGGTGCTCGTGGTCAGCACGCAAAGCCGTATCTTAAAAAATT
ACTTCCTGACAATAATGTTAACGTCTTCAATCAATAGAGCTACTTCCGCC
ATGAATATACTTGAATACACGCGATCGTCACCAATATAGTACTGACTCCA
GTCCGTCATATCGTAAGCCATCAATGGTGCAGGTCCTTGTCGGTGCTTGG
CGTTTTCCGTTTCGTCTTTGCAGCAACAATACAGCTTCGAGCCGGACAAT
ATGGTGAGCATGGTGAAGCAGGCGTTGCAAGAAAAGGAAGGGATTCAGGC
AA
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Coding sequence (CDS) from alignment at H-elongata_contig60625:2094..2495-

>mRNA_H-elongata_contig60625.13603.1 ID=mRNA_H-elongata_contig60625.13603.1|Name=mRNA_H-elongata_contig60625.13603.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig60625:2094..2495- (Himanthalia elongata Himel1 dioecious)
CAGATCTGGATCAAGACCTTGACCGGCCGCAAACAGATCTGGATCAAGAC
CTTGACCGGCCGCAAACAACAATACAGCTTCGAGCCGGACAATATGGTGA
GCATGGTGAAGCAGGCGTTGCAAGAAAAGGAAGGGATTCAGGCACAACAA
TACAGCTTCGAGCCGGACAATATGGTGAGCATGGTGAAGCAGGCGTTGCA
AGAAAAGGAAGGGATTCAGGCA
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