mRNA_H-elongata_contig60539.13599.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60539.13599.1
Unique NamemRNA_H-elongata_contig60539.13599.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A6H5L581_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L581_9PHAE)

HSP 1 Score: 431 bits (1108), Expect = 6.230e-139
Identity = 220/249 (88.35%), Postives = 233/249 (93.57%), Query Frame = 1
Query:    4 QAVLPYLKSSMGVENASLVYNSFLPVAQSYADAVEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPNDLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            QAVLPYL+SSMG  +ASLVY+SFLPVA SYADAVEEG+AAELCNIDFSLAYGGKILLHNTRLRLL+GHRYGLLGPNGAGKTTLMRNIA+GAIDGLP +LRTVFVQHDIV S+V+TSIIDYTCNVEELK V REKV+ TLAEVGFSEEGQAAPI SLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDV AVKWLTDYLT L+DVTVI VSHDT FLED+VTDVLHYE LKLV Y GGLKHFI+LKPEAK
Sbjct:  661 QAVLPYLRSSMGEADASLVYDSFLPVAHSYADAVEEGNAAELCNIDFSLAYGGKILLHNTRLRLLAGHRYGLLGPNGAGKTTLMRNIANGAIDGLPTELRTVFVQHDIVASDVDTSIIDYTCNVEELKAVSREKVSATLAEVGFSEEGQAAPITSLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVHAVKWLTDYLTGLKDVTVICVSHDTGFLEDMVTDVLHYEALKLVPYHGGLKHFISLKPEAK 909          
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A836CGS6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS6_9STRA)

HSP 1 Score: 292 bits (747), Expect = 2.320e-88
Identity = 147/219 (67.12%), Postives = 175/219 (79.91%), Query Frame = 1
Query:  109 EGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPNDLRTVFVQHDIVGSEVETSIIDYTCNVEELKG-----VPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            +GDAA+LCNI+FSLAYGGKILLHNTRLRL +GHRYGL+G NGAGKTTLMRNIA+G IDGLP+DLRTV+V+HDIVGS+ +T + ++  +V            R ++  TL+ VGF++   AAP++SLSGGWKMKLALARAML  A VLLLDEPTNHLD  AV WLT YL SL DVTV+ VSHDT FL+DVVTD+LHYE+ KLV Y G L HF+ L+PEAK
Sbjct:  445 DGDAADLCNIEFSLAYGGKILLHNTRLRLRAGHRYGLIGANGAGKTTLMRNIANGNIDGLPDDLRTVYVEHDIVGSDADTPVAEFVASVLPASDDADATARRARIVATLSGVGFTDAMLAAPVSSLSGGWKMKLALARAMLMNANVLLLDEPTNHLDTTAVAWLTRYLASLSDVTVLVVSHDTAFLDDVVTDILHYESQKLVPYHGNLTHFVRLRPEAK 663          
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: K3XBF7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBF7_GLOUD)

HSP 1 Score: 259 bits (662), Expect = 4.630e-76
Identity = 143/249 (57.43%), Postives = 175/249 (70.28%), Query Frame = 1
Query:   10 VLPYLKSSMGVENASLVYNSFLPVAQSYA-DAVEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPNDLRTVFVQH-DIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            VLPYL+  M  E+A  V  +          + V+  D  ++C++DFSLAYGGKILL N RL L  GHRYGL+G NG GKTTLMRNI++GAIDGLP  LRTV+VQH DIV  E + S++D  C   EL    RE V  TL ++GF+++     I +LSGGW+MKLA+ARAML  A VLLLDEPTNHLDV AV WL DYL SL ++TV+ VSHDT FL++V TDVLHYE+ +LV Y G L HF+ L PEAK
Sbjct:  498 VLPYLQPHMHDEDADRVCAALRAAGGGLGGERVKSTDPNDVCDVDFSLAYGGKILLRNARLCLTRGHRYGLVGKNGVGKTTLMRNISTGAIDGLPESLRTVYVQHEDIV--ESKGSLLDSMCAAPELTHQTRETVVKTLTDIGFTQKMLDGEIDALSGGWRMKLAIARAMLYNADVLLLDEPTNHLDVHAVAWLVDYLNSLDNMTVLLVSHDTGFLDNVCTDVLHYESKQLVLYPGTLSHFVELHPEAK 744          
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A2D4C5V3_PYTIN (Elongation factor 3, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5V3_PYTIN)

HSP 1 Score: 255 bits (651), Expect = 8.440e-75
Identity = 139/248 (56.05%), Postives = 166/248 (66.94%), Query Frame = 1
Query:   10 VLPYLKSSMGVENASLVYNSFLPVAQSYA-DAVEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPNDLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            VLPYL   M   +A  V  +          D     D  ++C++D SLAYGGKILL N RLRL  GHRYGL+G NG GKTTLMRNIASGA DGLP +LRTV+VQH+ V  + + S++       EL     E V  TL E+GF+      PI +LSGGW+MKLA+ARAML  A VLLLDEPTNHLDV AV+WL DYL SL D+TV+ VSHDT FL++V TD+LHYE  +LV Y G L HF+ L PEAK
Sbjct:  491 VLPYLTPHMHDSDAERVSEALKAAGGGLGGDRERSTDPNDVCDLDISLAYGGKILLRNARLRLTRGHRYGLVGKNGVGKTTLMRNIASGAXDGLPTELRTVYVQHEDVVPD-QGSLLASMVAAPELSHQTAEHVEATLLEIGFTRAQLDGPIGALSGGWRMKLAIARAMLYNADVLLLDEPTNHLDVHAVQWLVDYLNSLADMTVLLVSHDTGFLDNVCTDILHYEAKQLVLYPGSLSHFVTLHPEAK 737          
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A662X7M3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7M3_9STRA)

HSP 1 Score: 255 bits (651), Expect = 8.990e-75
Identity = 128/211 (60.66%), Postives = 162/211 (76.78%), Query Frame = 1
Query:  124 ELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPN--DLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            +LCN +FSLAYGG ILL+N RLRL  GHRYGL GPNG GK+TLMR IA+G +DG P+  DL+TVFV+H++  SE E S++D+    E+LK  PR+++  TLA VGF+ E QA  + +LSGGWKMKL LARAMLQ+A +LLLDEPTNHLDVK V WL +YL +L +VT I VSHD+ FL+ V T+++HYET KL +Y G L  F+ +KPEAK
Sbjct:  473 DLCNCEFSLAYGGMILLNNARLRLKRGHRYGLCGPNGCGKSTLMRAIANGQLDGFPSREDLKTVFVEHNLQASEAELSVVDFILCDEDLKNTPRDEIVDTLAGVGFTAEMQAQAVGTLSGGWKMKLELARAMLQKADILLLDEPTNHLDVKNVAWLENYLVNLPNVTSIMVSHDSGFLDTVCTNIIHYETRKLKTYKGNLSKFVEVKPEAK 683          
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: G4YKF0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YKF0_PHYSP)

HSP 1 Score: 248 bits (632), Expect = 1.060e-74
Identity = 125/211 (59.24%), Postives = 161/211 (76.30%), Query Frame = 1
Query:  124 ELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPN--DLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            +LCN +FSLAYGG ILL+N RLRL  GHRYGL GPNG GK+TLMR IA+G ++G P+  +L+TVFV+H++  SE E S++D+    ++LK  PR++V   LA+VGF+ E QA  + SLSGGWKMKL L+RAML +A +LLLDEPTNHLDVK V WL +YLTS+ +VT I VSHD+ FL++V T+++HYET KL  Y G L  F+  KPEAK
Sbjct:   37 DLCNCEFSLAYGGMILLNNARLRLKRGHRYGLCGPNGCGKSTLMRAIANGQLEGFPSRDELKTVFVEHNLQASEAELSVVDFILIDDDLKNTPRKEVEDALADVGFTAEMQAQAVGSLSGGWKMKLELSRAMLLKADILLLDEPTNHLDVKNVAWLENYLTSVPNVTSIMVSHDSGFLDNVCTNIIHYETRKLKIYKGNLSKFVEQKPEAK 247          
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: I0YWU5_COCSC (Elongation factor EF-3 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YWU5_COCSC)

HSP 1 Score: 254 bits (648), Expect = 2.020e-74
Identity = 141/257 (54.86%), Postives = 174/257 (67.70%), Query Frame = 1
Query:    4 QAVLPYLKSSMGVENASLVYNSFLP----VAQSYA-DAVEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLP--NDLRTVFVQHDIVGSEVETSIIDYTCNVEELKG-VPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            + V+PYL   M       V   FL     V Q  A D VEE +  +LC+ +FSLAYG KILL+NTRLRL  G RYGL GPNGAGK+TLMR IA+G +DG P   +LRTV+V+HDI     + S++DY      LKG V   +V  TL  VGF+E  Q +P+ASLSGGWKMKLALARAMLQ A+++LLDEPTNHLDVK V WL +YLT+L DVT + VSHD+ FL++V   ++HYE  KL  Y G L  F+  KPEA+
Sbjct:  402 KCVVPYLSEFMEAAAVEKVCAEFLDKSYMVTQDKAHDEVEEEEGVDLCDCEFSLAYGAKILLNNTRLRLKKGRRYGLCGPNGAGKSTLMRAIANGQVDGFPPKEELRTVYVEHDIDAELSDISVVDYVFADPVLKGEVTLPQVTETLGSVGFTENMQNSPVASLSGGWKMKLALARAMLQRAEIMLLDEPTNHLDVKNVAWLVNYLTTLTDVTSVIVSHDSGFLDNVCQSIIHYENRKLKIYKGNLSEFVKKKPEAR 658          
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: EF3_PHYIT (Elongation factor 3 n=26 Tax=Peronosporaceae TaxID=4777 RepID=EF3_PHYIT)

HSP 1 Score: 251 bits (641), Expect = 1.730e-73
Identity = 128/211 (60.66%), Postives = 161/211 (76.30%), Query Frame = 1
Query:  124 ELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPN--DLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            +LCN +FSLAYGG ILL+N RLRL  GHRYGL GPNG GK+TLMR I++G ++G P+  +L+TVFV+H++  SE E S++D+    E+LK  PR++V  TLA VGF+ E QA  + +LSGGWKMKL LARAMLQ+A +LLLDEPTNHLDVK V WL +YLTSL +VT I VSHD+ FL+ V T+++HYET KL  Y G L  F+  KPEAK
Sbjct:  439 DLCNCEFSLAYGGMILLNNARLRLKRGHRYGLCGPNGCGKSTLMRAISNGQLEGFPSRDELKTVFVEHNLQASEAELSVVDFILVDEDLKNTPRKEVEDTLAGVGFTAEMQAQGVGTLSGGWKMKLELARAMLQKADILLLDEPTNHLDVKNVAWLENYLTSLTNVTSIMVSHDSGFLDTVCTNIIHYETRKLKIYKGNLSKFVEQKPEAK 649          
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: K3WQ46_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WQ46_GLOUD)

HSP 1 Score: 251 bits (640), Expect = 2.480e-73
Identity = 130/230 (56.52%), Postives = 169/230 (73.48%), Query Frame = 1
Query:   85 QSYADAVEEGDAAE----LCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLP--NDLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRD--VTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            ++ A  +E+ D  E    LCN +FSLAYGG ILL+N RLRL  GHRYGL GPNG GK+TLMR IA+G ++G P  ++L+T+FV+H++   E + S++D+ C  EELK  PR+++  TL+ VGF++E QA  + SLSGGWKMKL LARAMLQ+A +LLLDEPTNHLDVK V WL +YL SL+D  VT I VSHD+ FL++V T+++HYE  KL  Y G L  F+  KPEAK
Sbjct:  423 ENKAIIIEDVDCDEGKPDLCNCEFSLAYGGMILLNNARLRLKRGHRYGLCGPNGCGKSTLMRAIANGQLEGFPKKDELKTIFVEHNLQAEEADLSVLDFICLDEELKNSPRQEIVDTLSSVGFTDEMQAQAVGSLSGGWKMKLELARAMLQKADILLLDEPTNHLDVKNVAWLENYLNSLQDMGVTSIMVSHDSGFLDNVCTNIIHYENRKLKIYKGNLSKFVEAKPEAK 652          
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A4P9XA09_9FUNG (Uncharacterized protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9XA09_9FUNG)

HSP 1 Score: 250 bits (639), Expect = 4.220e-73
Identity = 136/258 (52.71%), Postives = 178/258 (68.99%), Query Frame = 1
Query:   10 VLPYLKSSMGVENAS-LVYNSFLPVAQSYADA------VEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPN--DLRTVFVQHDIVGSEVETSIIDYTCNVEELK--GVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
            + P L S+M ++NA  LV    L   +  A        V+E +   LC+ DFSLAYGG ILL+N  L+L  G RYGLLGPNG+GKTTLMR IA   ++G P+  +LRTVFV+H +   + +  +ID+  N E+L+   + RE++A TLA VGF+ + QA P+ SLSGGWKMKL LARAML  A +LLLDEPTNHLDV  VKWL +YLTSL DVT I VSHD+ F+++V T+++HYE+ KL +Y G + HF+ L PEAK
Sbjct:  420 IAPKLTSAMSLDNAKKLVEELRLHYVEMDAKRIKAEKEVDEEEGEVLCDCDFSLAYGGMILLNNAHLKLQRGQRYGLLGPNGSGKTTLMRAIAEDKLEGFPSPDELRTVFVEHSLQAEDADFPVIDFVANDEKLQKQNIKREEIAETLASVGFTPDMQAQPVGSLSGGWKMKLELARAMLMHADILLLDEPTNHLDVANVKWLENYLTSLSDVTSIIVSHDSGFIDNVCTNIVHYESRKLKTYKGNMSHFVTLVPEAK 677          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L581_9PHAE6.230e-13988.35ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A836CGS6_9STRA2.320e-8867.12P-loop containing nucleoside triphosphate hydrolas... [more]
K3XBF7_GLOUD4.630e-7657.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4C5V3_PYTIN8.440e-7556.05Elongation factor 3, putative (Fragment) n=1 Tax=P... [more]
A0A662X7M3_9STRA8.990e-7560.66Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
G4YKF0_PHYSP1.060e-7459.24Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
I0YWU5_COCSC2.020e-7454.86Elongation factor EF-3 n=2 Tax=Coccomyxa TaxID=418... [more]
EF3_PHYIT1.730e-7360.66Elongation factor 3 n=26 Tax=Peronosporaceae TaxID... [more]
K3WQ46_GLOUD2.480e-7356.52Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A4P9XA09_9FUNG4.220e-7352.71Uncharacterized protein n=1 Tax=Caulochytrium prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60539contigH-elongata_contig60539:225..3102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score416.4
Seed ortholog evalue9.5e-114
Seed eggNOG ortholog2880.D7G7M2
KEGG koko:K03235
GOsGO:0000302,GO:0003674,GO:0005488,GO:0006417,GO:0006446,GO:0006448,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0009267,GO:0009268,GO:0009605,GO:0009628,GO:0009636,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010447,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0014070,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0032056,GO:0032058,GO:0032268,GO:0032270,GO:0033554,GO:0034198,GO:0034248,GO:0034250,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042594,GO:0043021,GO:0043022,GO:0043555,GO:0043558,GO:0044877,GO:0045727,GO:0045948,GO:0046677,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060992,GO:0065007,GO:0070301,GO:0070887,GO:0071214,GO:0071236,GO:0071262,GO:0071264,GO:0071310,GO:0071407,GO:0071417,GO:0071467,GO:0071468,GO:0071495,GO:0071496,GO:0072755,GO:0080090,GO:0097237,GO:0104004,GO:1901561,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990451,GO:1990928,GO:2000112
EggNOG free text desc.protein kinase regulator activity
EggNOG OGsCOG0488@1,KOG0062@2759,KOG1242@1,KOG1242@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Exons4
Model size753
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60539.13599.1prot_H-elongata_contig60539.13599.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60539 225..3102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.9986694-CDS-H-elongata_contig60539:224..4491622930979.9986694-CDS-H-elongata_contig60539:224..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60539 225..449 -
1691679649.1329265-CDS-H-elongata_contig60539:224..4491691679649.1329265-CDS-H-elongata_contig60539:224..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60539 225..449 -
1622930980.0146163-CDS-H-elongata_contig60539:660..8491622930980.0146163-CDS-H-elongata_contig60539:660..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60539 661..849 -
1691679649.1457283-CDS-H-elongata_contig60539:660..8491691679649.1457283-CDS-H-elongata_contig60539:660..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60539 661..849 -
1622930980.0330503-CDS-H-elongata_contig60539:1737..18671622930980.0330503-CDS-H-elongata_contig60539:1737..1867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60539 1738..1867 -
1691679649.1564043-CDS-H-elongata_contig60539:1737..18671691679649.1564043-CDS-H-elongata_contig60539:1737..1867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60539 1738..1867 -
1622930980.052084-CDS-H-elongata_contig60539:2893..31021622930980.052084-CDS-H-elongata_contig60539:2893..3102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60539 2894..3102 -
1691679649.1683083-CDS-H-elongata_contig60539:2893..31021691679649.1683083-CDS-H-elongata_contig60539:2893..3102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60539 2894..3102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60539.13599.1

>prot_H-elongata_contig60539.13599.1 ID=prot_H-elongata_contig60539.13599.1|Name=mRNA_H-elongata_contig60539.13599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
MQAVLPYLKSSMGVENASLVYNSFLPVAQSYADAVEEGDAAELCNIDFSL
AYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPNDL
RTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQ
AAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLT
SLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK
*
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mRNA from alignment at H-elongata_contig60539:225..3102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60539.13599.1 ID=mRNA_H-elongata_contig60539.13599.1|Name=mRNA_H-elongata_contig60539.13599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2878bp|location=Sequence derived from alignment at H-elongata_contig60539:225..3102- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCTGTCCTCCCGTACCTCAAGTCGTCCATGGGCGTGGAAAATGC CTCCTTGGTGTACAACTCCTTCCTCCCCGTGGCACAGTCTTACGCCGATG CCGTCGAGGAAGGAGATGCCGCCGAATTGTGCAACATCGACTTTTCCCTG GCGTACGGTGGCAAGATCTTGTTGCACAACACCCGCCTGAGGCTGCTCTC GGGCCACAGGTGCGGGACTTTTGAAATACTGTTCTAATAACGTTGTTATT TTTCTCAAATTATTTTTCTTCGCTTGCCCGTTTTTTTCTTGATTTTTTTT AATTAAAAAAAAATGTAGCTTGCTGTAAAAAACATCGCAAACTCGCTGTC CCGTCGATTTGTGAGATATGCTAGATAGAGAGGACCCAGCCATCTCTCAC TGATCTGTCTGTTTAGCAGATGATTCACCATCGTGTGTGTTTGTGTGTGT GTGTGTTTCTTCATTAGGCTTAGATCTCTAGCAGACTACCAACTATTGTA ATATTGATATGTACGGTAATTGGTTGTAGTATACGGTAATTGGTTATAAT ATACAGTAATTGATTGTAATGTATGGTAATAGGTTGTAGTATACTGTAAA TGATTGTAATATACGGTAAATGGTTACAACATACGGTAATTGATTGTAAT ATACGGTAATTGATTGTAATATACGATAATTGATTGTAATATGTGCTAGT ACGGTAATTGTTTGACATCCGTGCATAGTAGTGGGTACAGTACGTATGTT ATATGTGAATGTTATCGCTAGGTCACGGTCGGTTAATGGAGAAAAAAAAC ACTCACATACTAATATCCATATATTAATATATATTCTTAATCGGAAGAAA GAAAATTGGCGGCGGGGCATTGATTGAAATCCACGATCTCGCCCCCAAGA TCTCAACTGATATAATAATGTACCTACAGGATATGTTTTCATCCATCCCC CCTCTATCAATAGTGTTTCATTTCAATACCGAAATGTGCTCCCCTACCCA CATATCATCCCTGATTTCTGCGTCCGCAGCCATTTTTACTGATATTGTTA GCATCCCTTGCTTTGGTTGAACTTGATAGAATCCCCCAACGCTGACCGAA CCGTGTGTCTTTCTCCCGCACAACGAGCAACGTCATCATGATGATCCTAT CGAACATGGTATCCTGCCTCCCTAACGGATAGCTCCTGTGTGCTGCTGCT GCTGCGAAAACTCTTGCTCGTCCTTCTTGGTCCAGATACGGGCTGCTGGG ACCCAACGGCGCGGGAAAGACGACACTGATGCGCAACATCGCAAGCGGCG CAATCGACGGGCTACCCAACGACCTCCGCACTGTCTTCGTCCAGCATGAT ATCGTCGGAAGCGAGGTGCGGTGTAGTTAGGTGTAGGCTCTAGTAGTAGT AGCTCTAGAGGTGGGGGGGAAAGGATGAAAGTCTGAATGTCCCCCCCAAC CTTTTTGTCCCTTTTTTAACCCCTAGGGAACGCGATCTATTTTTTACATA TTAAATGTAGAATAAAAGTAAAAATCCAGTTCTAAAAGGGTTGAAGAAAG AAGTTTCGAGCCCATTTTTTCATAGTAAGAGGTGGAAATTCGTCCGTCCT TCCAATATTTATTTTTTTTCTTGAGAAGAGGTTTTTGATGAGACTTAAGA ATGAGGCATGTACAGGAAAGCCCCCTACGAAACGCCTCCGTCGTAGAAAA AAACGCCTCCTTATGCGACCATCACTTTTTGGCGGCGTTTTGTTCTGGCA GCTAGCTCTATTATAGCATTGTGTACACTCGAAGGTTTGGATATAACGGG CTTGATGGTGGTCCTATAATTGGGTTATAGTTGAAAAGAGATAAAGCGCA AAATAAAAAATATGGTCAAAATATACTCAATTTTGGAAATATTGTGAGAG AAACAATTGGGCGATAACGACTCTAGTGTGGAACATACGGTACAGGGGAT ATTGGAAAGGGTGGTAAAACACGATGAGGTGCGCTTTTAAAAGACTTGGG ACATTCTGGCATGAAGTTCCAGAACGACGAGGACGAAGGGAGTTTTTTTC CCGACATGCCTTTTCGCCCTAAAAAGGAACGAAATACAGCCATTTTGGGG GCGACCGTTTTTTTTGCGGCCGTTCAGCCTCATGGATGAAACACCATCTG TGAAAAGAAAATGTTAAAAAAAAATGGACATGGTTAAATAACCACCCAGA ATTATGGGACAAAGGATGTAGTTATTTAATTGTGCGTTGAATGTTTCCTT CAGGTGGAGACAAGTATTATCGACTACACCTGCAACGTGGAAGAGCTCAA GGGTGTTCCTAGAGAAAAGGTGGCGACTACGCTGGCGGAGGTGGGGTTCA GCGAGGAGGGCCAGGCAGCTCCCATCGCCTCGCTGTCCGGGGGCTGGAAA ATGAAGCTCGCGCTGGCCCGTGCTATGCTGCAGGAAGCTCAGGTATGTGA TGTGTATGTGTGTGTGTTTTCGGTGGGTGTCGGGGTTGTTTTGTCTTTTT ATTCATTAGTTGTTTTTTAAGTGTGAGTGGGTTTCTGTTGAGACAGTGGG GAGGCGTTTACAGTGTTCTCCTCTCCTTCCCACCTCCCCGTAAACCATAC ACGCCTCCGCAACACTGAAACTCCAAGACGATGCAATGAACGTGAATCAA CAGGTGCTACTGCTGGACGAGCCGACCAATCACTTGGACGTGAAGGCGGT GAAGTGGCTGACCGACTACCTTACTAGCCTCCGGGACGTGACGGTGATCA CTGTTTCCCACGACACGCAGTTCCTAGAAGACGTGGTGACGGACGTGTTG CACTACGAGACCCTCAAGCTGGTGTCGTATGGGGGGGGCTTGAAGCATTT CATTGCCCTCAAGCCGGAGGCAAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig60539:225..3102-

>mRNA_H-elongata_contig60539.13599.1 ID=mRNA_H-elongata_contig60539.13599.1|Name=mRNA_H-elongata_contig60539.13599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig60539:225..3102- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCTGTCCTCCCGTACCTCAAGTCGTCCATGGGCGTGGAAAATGC
CTCCTTGGTGTACAACTCCTTCCTCCCCGTGGCACAGTCTTACGCCGATG
CCGTCGAGGAAGGAGATGCCGCCGAATTGTGCAACATCGACTTTTCCCTG
GCGTACGGTGGCAAGATCTTGTTGCACAACACCCGCCTGAGGCTGCTCTC
GGGCCACAGATGCAGGCTGTCCTCCCGTACCTCAAGTCGTCCATGGGCGT
GGAAAATGCCTCCTTGGTGTACAACTCCTTCCTCCCCGTGGCACAGTCTT
ACGCCGATGCCGTCGAGGAAGGAGATGCCGCCGAATTGTGCAACATCGAC
TTTTCCCTGGCGTACGGTGGCAAGATCTTGTTGCACAACACCCGCCTGAG
GCTGCTCTCGGGCCACAGATACGGGCTGCTGGGACCCAACGGCGCGGGAA
AGACGACACTGATGCGCAACATCGCAAGCGGCGCAATCGACGGGCTACCC
AACGACCTCCGCACTGTCTTCGTCCAGCATGATATCGTCGGAAGCGAGAT
ACGGGCTGCTGGGACCCAACGGCGCGGGAAAGACGACACTGATGCGCAAC
ATCGCAAGCGGCGCAATCGACGGGCTACCCAACGACCTCCGCACTGTCTT
CGTCCAGCATGATATCGTCGGAAGCGAGGTGGAGACAAGTATTATCGACT
ACACCTGCAACGTGGAAGAGCTCAAGGGTGTTCCTAGAGAAAAGGTGGCG
ACTACGCTGGCGGAGGTGGGGTTCAGCGAGGAGGGCCAGGCAGCTCCCAT
CGCCTCGCTGTCCGGGGGCTGGAAAATGAAGCTCGCGCTGGCCCGTGCTA
TGCTGCAGGAAGCTCAGGTGGAGACAAGTATTATCGACTACACCTGCAAC
GTGGAAGAGCTCAAGGGTGTTCCTAGAGAAAAGGTGGCGACTACGCTGGC
GGAGGTGGGGTTCAGCGAGGAGGGCCAGGCAGCTCCCATCGCCTCGCTGT
CCGGGGGCTGGAAAATGAAGCTCGCGCTGGCCCGTGCTATGCTGCAGGAA
GCTCAGGTGCTACTGCTGGACGAGCCGACCAATCACTTGGACGTGAAGGC
GGTGAAGTGGCTGACCGACTACCTTACTAGCCTCCGGGACGTGACGGTGA
TCACTGTTTCCCACGACACGCAGTTCCTAGAAGACGTGGTGACGGACGTG
TTGCACTACGAGACCCTCAAGCTGGTGTCGTATGGGGGGGGCTTGAAGCA
TTTCATTGCCCTCAAGCCGGAGGCAAAGTGAGTGCTACTGCTGGACGAGC
CGACCAATCACTTGGACGTGAAGGCGGTGAAGTGGCTGACCGACTACCTT
ACTAGCCTCCGGGACGTGACGGTGATCACTGTTTCCCACGACACGCAGTT
CCTAGAAGACGTGGTGACGGACGTGTTGCACTACGAGACCCTCAAGCTGG
TGTCGTATGGGGGGGGCTTGAAGCATTTCATTGCCCTCAAGCCGGAGGCA
AAGTGA
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