mRNA_H-elongata_contig60539.13599.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A6H5L581_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L581_9PHAE) HSP 1 Score: 431 bits (1108), Expect = 6.230e-139 Identity = 220/249 (88.35%), Postives = 233/249 (93.57%), Query Frame = 1
Query: 4 QAVLPYLKSSMGVENASLVYNSFLPVAQSYADAVEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPNDLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
QAVLPYL+SSMG +ASLVY+SFLPVA SYADAVEEG+AAELCNIDFSLAYGGKILLHNTRLRLL+GHRYGLLGPNGAGKTTLMRNIA+GAIDGLP +LRTVFVQHDIV S+V+TSIIDYTCNVEELK V REKV+ TLAEVGFSEEGQAAPI SLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDV AVKWLTDYLT L+DVTVI VSHDT FLED+VTDVLHYE LKLV Y GGLKHFI+LKPEAK
Sbjct: 661 QAVLPYLRSSMGEADASLVYDSFLPVAHSYADAVEEGNAAELCNIDFSLAYGGKILLHNTRLRLLAGHRYGLLGPNGAGKTTLMRNIANGAIDGLPTELRTVFVQHDIVASDVDTSIIDYTCNVEELKAVSREKVSATLAEVGFSEEGQAAPITSLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVHAVKWLTDYLTGLKDVTVICVSHDTGFLEDMVTDVLHYEALKLVPYHGGLKHFISLKPEAK 909
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A836CGS6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS6_9STRA) HSP 1 Score: 292 bits (747), Expect = 2.320e-88 Identity = 147/219 (67.12%), Postives = 175/219 (79.91%), Query Frame = 1
Query: 109 EGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPNDLRTVFVQHDIVGSEVETSIIDYTCNVEELKG-----VPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
+GDAA+LCNI+FSLAYGGKILLHNTRLRL +GHRYGL+G NGAGKTTLMRNIA+G IDGLP+DLRTV+V+HDIVGS+ +T + ++ +V R ++ TL+ VGF++ AAP++SLSGGWKMKLALARAML A VLLLDEPTNHLD AV WLT YL SL DVTV+ VSHDT FL+DVVTD+LHYE+ KLV Y G L HF+ L+PEAK
Sbjct: 445 DGDAADLCNIEFSLAYGGKILLHNTRLRLRAGHRYGLIGANGAGKTTLMRNIANGNIDGLPDDLRTVYVEHDIVGSDADTPVAEFVASVLPASDDADATARRARIVATLSGVGFTDAMLAAPVSSLSGGWKMKLALARAMLMNANVLLLDEPTNHLDTTAVAWLTRYLASLSDVTVLVVSHDTAFLDDVVTDILHYESQKLVPYHGNLTHFVRLRPEAK 663
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: K3XBF7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBF7_GLOUD) HSP 1 Score: 259 bits (662), Expect = 4.630e-76 Identity = 143/249 (57.43%), Postives = 175/249 (70.28%), Query Frame = 1
Query: 10 VLPYLKSSMGVENASLVYNSFLPVAQSYA-DAVEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPNDLRTVFVQH-DIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
VLPYL+ M E+A V + + V+ D ++C++DFSLAYGGKILL N RL L GHRYGL+G NG GKTTLMRNI++GAIDGLP LRTV+VQH DIV E + S++D C EL RE V TL ++GF+++ I +LSGGW+MKLA+ARAML A VLLLDEPTNHLDV AV WL DYL SL ++TV+ VSHDT FL++V TDVLHYE+ +LV Y G L HF+ L PEAK
Sbjct: 498 VLPYLQPHMHDEDADRVCAALRAAGGGLGGERVKSTDPNDVCDVDFSLAYGGKILLRNARLCLTRGHRYGLVGKNGVGKTTLMRNISTGAIDGLPESLRTVYVQHEDIV--ESKGSLLDSMCAAPELTHQTRETVVKTLTDIGFTQKMLDGEIDALSGGWRMKLAIARAMLYNADVLLLDEPTNHLDVHAVAWLVDYLNSLDNMTVLLVSHDTGFLDNVCTDVLHYESKQLVLYPGTLSHFVELHPEAK 744
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A2D4C5V3_PYTIN (Elongation factor 3, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5V3_PYTIN) HSP 1 Score: 255 bits (651), Expect = 8.440e-75 Identity = 139/248 (56.05%), Postives = 166/248 (66.94%), Query Frame = 1
Query: 10 VLPYLKSSMGVENASLVYNSFLPVAQSYA-DAVEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPNDLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
VLPYL M +A V + D D ++C++D SLAYGGKILL N RLRL GHRYGL+G NG GKTTLMRNIASGA DGLP +LRTV+VQH+ V + + S++ EL E V TL E+GF+ PI +LSGGW+MKLA+ARAML A VLLLDEPTNHLDV AV+WL DYL SL D+TV+ VSHDT FL++V TD+LHYE +LV Y G L HF+ L PEAK
Sbjct: 491 VLPYLTPHMHDSDAERVSEALKAAGGGLGGDRERSTDPNDVCDLDISLAYGGKILLRNARLRLTRGHRYGLVGKNGVGKTTLMRNIASGAXDGLPTELRTVYVQHEDVVPD-QGSLLASMVAAPELSHQTAEHVEATLLEIGFTRAQLDGPIGALSGGWRMKLAIARAMLYNADVLLLDEPTNHLDVHAVQWLVDYLNSLADMTVLLVSHDTGFLDNVCTDILHYEAKQLVLYPGSLSHFVTLHPEAK 737
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A662X7M3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7M3_9STRA) HSP 1 Score: 255 bits (651), Expect = 8.990e-75 Identity = 128/211 (60.66%), Postives = 162/211 (76.78%), Query Frame = 1
Query: 124 ELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPN--DLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
+LCN +FSLAYGG ILL+N RLRL GHRYGL GPNG GK+TLMR IA+G +DG P+ DL+TVFV+H++ SE E S++D+ E+LK PR+++ TLA VGF+ E QA + +LSGGWKMKL LARAMLQ+A +LLLDEPTNHLDVK V WL +YL +L +VT I VSHD+ FL+ V T+++HYET KL +Y G L F+ +KPEAK
Sbjct: 473 DLCNCEFSLAYGGMILLNNARLRLKRGHRYGLCGPNGCGKSTLMRAIANGQLDGFPSREDLKTVFVEHNLQASEAELSVVDFILCDEDLKNTPRDEIVDTLAGVGFTAEMQAQAVGTLSGGWKMKLELARAMLQKADILLLDEPTNHLDVKNVAWLENYLVNLPNVTSIMVSHDSGFLDTVCTNIIHYETRKLKTYKGNLSKFVEVKPEAK 683
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: G4YKF0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YKF0_PHYSP) HSP 1 Score: 248 bits (632), Expect = 1.060e-74 Identity = 125/211 (59.24%), Postives = 161/211 (76.30%), Query Frame = 1
Query: 124 ELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPN--DLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
+LCN +FSLAYGG ILL+N RLRL GHRYGL GPNG GK+TLMR IA+G ++G P+ +L+TVFV+H++ SE E S++D+ ++LK PR++V LA+VGF+ E QA + SLSGGWKMKL L+RAML +A +LLLDEPTNHLDVK V WL +YLTS+ +VT I VSHD+ FL++V T+++HYET KL Y G L F+ KPEAK
Sbjct: 37 DLCNCEFSLAYGGMILLNNARLRLKRGHRYGLCGPNGCGKSTLMRAIANGQLEGFPSRDELKTVFVEHNLQASEAELSVVDFILIDDDLKNTPRKEVEDALADVGFTAEMQAQAVGSLSGGWKMKLELSRAMLLKADILLLDEPTNHLDVKNVAWLENYLTSVPNVTSIMVSHDSGFLDNVCTNIIHYETRKLKIYKGNLSKFVEQKPEAK 247
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: I0YWU5_COCSC (Elongation factor EF-3 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YWU5_COCSC) HSP 1 Score: 254 bits (648), Expect = 2.020e-74 Identity = 141/257 (54.86%), Postives = 174/257 (67.70%), Query Frame = 1
Query: 4 QAVLPYLKSSMGVENASLVYNSFLP----VAQSYA-DAVEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLP--NDLRTVFVQHDIVGSEVETSIIDYTCNVEELKG-VPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
+ V+PYL M V FL V Q A D VEE + +LC+ +FSLAYG KILL+NTRLRL G RYGL GPNGAGK+TLMR IA+G +DG P +LRTV+V+HDI + S++DY LKG V +V TL VGF+E Q +P+ASLSGGWKMKLALARAMLQ A+++LLDEPTNHLDVK V WL +YLT+L DVT + VSHD+ FL++V ++HYE KL Y G L F+ KPEA+
Sbjct: 402 KCVVPYLSEFMEAAAVEKVCAEFLDKSYMVTQDKAHDEVEEEEGVDLCDCEFSLAYGAKILLNNTRLRLKKGRRYGLCGPNGAGKSTLMRAIANGQVDGFPPKEELRTVYVEHDIDAELSDISVVDYVFADPVLKGEVTLPQVTETLGSVGFTENMQNSPVASLSGGWKMKLALARAMLQRAEIMLLDEPTNHLDVKNVAWLVNYLTTLTDVTSVIVSHDSGFLDNVCQSIIHYENRKLKIYKGNLSEFVKKKPEAR 658
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: EF3_PHYIT (Elongation factor 3 n=26 Tax=Peronosporaceae TaxID=4777 RepID=EF3_PHYIT) HSP 1 Score: 251 bits (641), Expect = 1.730e-73 Identity = 128/211 (60.66%), Postives = 161/211 (76.30%), Query Frame = 1
Query: 124 ELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPN--DLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
+LCN +FSLAYGG ILL+N RLRL GHRYGL GPNG GK+TLMR I++G ++G P+ +L+TVFV+H++ SE E S++D+ E+LK PR++V TLA VGF+ E QA + +LSGGWKMKL LARAMLQ+A +LLLDEPTNHLDVK V WL +YLTSL +VT I VSHD+ FL+ V T+++HYET KL Y G L F+ KPEAK
Sbjct: 439 DLCNCEFSLAYGGMILLNNARLRLKRGHRYGLCGPNGCGKSTLMRAISNGQLEGFPSRDELKTVFVEHNLQASEAELSVVDFILVDEDLKNTPRKEVEDTLAGVGFTAEMQAQGVGTLSGGWKMKLELARAMLQKADILLLDEPTNHLDVKNVAWLENYLTSLTNVTSIMVSHDSGFLDTVCTNIIHYETRKLKIYKGNLSKFVEQKPEAK 649
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: K3WQ46_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WQ46_GLOUD) HSP 1 Score: 251 bits (640), Expect = 2.480e-73 Identity = 130/230 (56.52%), Postives = 169/230 (73.48%), Query Frame = 1
Query: 85 QSYADAVEEGDAAE----LCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLP--NDLRTVFVQHDIVGSEVETSIIDYTCNVEELKGVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRD--VTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
++ A +E+ D E LCN +FSLAYGG ILL+N RLRL GHRYGL GPNG GK+TLMR IA+G ++G P ++L+T+FV+H++ E + S++D+ C EELK PR+++ TL+ VGF++E QA + SLSGGWKMKL LARAMLQ+A +LLLDEPTNHLDVK V WL +YL SL+D VT I VSHD+ FL++V T+++HYE KL Y G L F+ KPEAK
Sbjct: 423 ENKAIIIEDVDCDEGKPDLCNCEFSLAYGGMILLNNARLRLKRGHRYGLCGPNGCGKSTLMRAIANGQLEGFPKKDELKTIFVEHNLQAEEADLSVLDFICLDEELKNSPRQEIVDTLSSVGFTDEMQAQAVGSLSGGWKMKLELARAMLQKADILLLDEPTNHLDVKNVAWLENYLNSLQDMGVTSIMVSHDSGFLDNVCTNIIHYENRKLKIYKGNLSKFVEAKPEAK 652
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Match: A0A4P9XA09_9FUNG (Uncharacterized protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9XA09_9FUNG) HSP 1 Score: 250 bits (639), Expect = 4.220e-73 Identity = 136/258 (52.71%), Postives = 178/258 (68.99%), Query Frame = 1
Query: 10 VLPYLKSSMGVENAS-LVYNSFLPVAQSYADA------VEEGDAAELCNIDFSLAYGGKILLHNTRLRLLSGHRYGLLGPNGAGKTTLMRNIASGAIDGLPN--DLRTVFVQHDIVGSEVETSIIDYTCNVEELK--GVPREKVATTLAEVGFSEEGQAAPIASLSGGWKMKLALARAMLQEAQVLLLDEPTNHLDVKAVKWLTDYLTSLRDVTVITVSHDTQFLEDVVTDVLHYETLKLVSYGGGLKHFIALKPEAK 750
+ P L S+M ++NA LV L + A V+E + LC+ DFSLAYGG ILL+N L+L G RYGLLGPNG+GKTTLMR IA ++G P+ +LRTVFV+H + + + +ID+ N E+L+ + RE++A TLA VGF+ + QA P+ SLSGGWKMKL LARAML A +LLLDEPTNHLDV VKWL +YLTSL DVT I VSHD+ F+++V T+++HYE+ KL +Y G + HF+ L PEAK
Sbjct: 420 IAPKLTSAMSLDNAKKLVEELRLHYVEMDAKRIKAEKEVDEEEGEVLCDCDFSLAYGGMILLNNAHLKLQRGQRYGLLGPNGSGKTTLMRAIAEDKLEGFPSPDELRTVFVEHSLQAEDADFPVIDFVANDEKLQKQNIKREEIAETLASVGFTPDMQAQPVGSLSGGWKMKLELARAMLMHADILLLDEPTNHLDVANVKWLENYLTSLSDVTSIIVSHDSGFIDNVCTNIVHYESRKLKTYKGNMSHFVTLVPEAK 677 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60539.13599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60539.13599.1 >prot_H-elongata_contig60539.13599.1 ID=prot_H-elongata_contig60539.13599.1|Name=mRNA_H-elongata_contig60539.13599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp MQAVLPYLKSSMGVENASLVYNSFLPVAQSYADAVEEGDAAELCNIDFSLback to top mRNA from alignment at H-elongata_contig60539:225..3102- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60539.13599.1 ID=mRNA_H-elongata_contig60539.13599.1|Name=mRNA_H-elongata_contig60539.13599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2878bp|location=Sequence derived from alignment at H-elongata_contig60539:225..3102- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60539:225..3102- >mRNA_H-elongata_contig60539.13599.1 ID=mRNA_H-elongata_contig60539.13599.1|Name=mRNA_H-elongata_contig60539.13599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig60539:225..3102- (Himanthalia elongata Himel1 dioecious)back to top |