mRNA_H-elongata_contig60530.13596.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60530.13596.1
Unique NamemRNA_H-elongata_contig60530.13596.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60530.13596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60530contigH-elongata_contig60530:26..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size433
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60530.13596.1prot_H-elongata_contig60530.13596.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60530 69..386 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.7385657-UTR-H-elongata_contig60530:25..681622930979.7385657-UTR-H-elongata_contig60530:25..68Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60530 26..68 +
1691679649.022907-UTR-H-elongata_contig60530:25..681691679649.022907-UTR-H-elongata_contig60530:25..68Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60530 26..68 +
1622930979.7712035-UTR-H-elongata_contig60530:386..4581622930979.7712035-UTR-H-elongata_contig60530:386..458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60530 387..458 +
1691679649.0439978-UTR-H-elongata_contig60530:386..4581691679649.0439978-UTR-H-elongata_contig60530:386..458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60530 387..458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.7566285-CDS-H-elongata_contig60530:68..3861622930979.7566285-CDS-H-elongata_contig60530:68..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60530 69..386 +
1691679649.0338838-CDS-H-elongata_contig60530:68..3861691679649.0338838-CDS-H-elongata_contig60530:68..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60530 69..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60530.13596.1

>prot_H-elongata_contig60530.13596.1 ID=prot_H-elongata_contig60530.13596.1|Name=mRNA_H-elongata_contig60530.13596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MWHAHTKSLRLTAWGVLRVKISLTKAWHGYSSRRVCLVVRSRSRPCYGTL
LVRPLFFFFQSLCSNLDGLHPDFLPKFLVCPRLYPPSHVHPLHEYLYYTI
MYYYY*
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mRNA from alignment at H-elongata_contig60530:26..458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60530.13596.1 ID=mRNA_H-elongata_contig60530.13596.1|Name=mRNA_H-elongata_contig60530.13596.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=433bp|location=Sequence derived from alignment at H-elongata_contig60530:26..458+ (Himanthalia elongata Himel1 dioecious)
CCAGGACCAAAGCCAAAAATTATAACAAAAGAAGACTTCCGCCATGTGGC
ATGCCCACACAAAATCATTGAGGCTAACCGCCTGGGGGGTTTTACGCGTA
AAAATATCACTCACCAAAGCATGGCACGGCTATTCAAGTAGAAGAGTATG
TTTGGTGGTACGCTCGCGAAGCCGACCCTGTTACGGAACCTTGCTCGTGA
GACCCCTCTTTTTCTTTTTCCAGAGTCTCTGCTCGAATCTTGACGGACTA
CATCCGGATTTCCTACCAAAATTCCTTGTGTGTCCTCGACTCTATCCTCC
CAGCCATGTTCACCCCTTGCACGAATATTTGTACTATACTATAATGTACT
ATTACTATTAATAGTACCCTTAGCGCGTCAGGAGGTACATTCTCTACACA
CCTAAACCCACATTTGCTGTGACCTCCTTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig60530:26..458+

>mRNA_H-elongata_contig60530.13596.1 ID=mRNA_H-elongata_contig60530.13596.1|Name=mRNA_H-elongata_contig60530.13596.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig60530:26..458+ (Himanthalia elongata Himel1 dioecious)
ATGTGGCATGCCCACACAAAATCATTGAGGCTAACCGCCTGGGGGGTTTT
ACGCGTAAAAATATCACTCACCAAAGCATGGCACGGCTATTCAAGTAGAA
GAGTATGTTTGGTGGTACGCTCGCGAAGCCGACCCTGTTACGGAACCTTG
CTCGTGAGACCCCTCTTTTTCTTTTTCCAGAGTCTCTGCTCGAATCTTGA
CGGACTACATCCGGATTTCCTACCAAAATTCCTTGTGTGTCCTCGACTCT
ATCCTCCCAGCCATGTTCACCCCTTGCACGAATATTTGTACTATACTATA
ATGTACTATTACTATTAAATGTGGCATGCCCACACAAAATCATTGAGGCT
AACCGCCTGGGGGGTTTTACGCGTAAAAATATCACTCACCAAAGCATGGC
ACGGCTATTCAAGTAGAAGAGTATGTTTGGTGGTACGCTCGCGAAGCCGA
CCCTGTTACGGAACCTTGCTCGTGAGACCCCTCTTTTTCTTTTTCCAGAG
TCTCTGCTCGAATCTTGACGGACTACATCCGGATTTCCTACCAAAATTCC
TTGTGTGTCCTCGACTCTATCCTCCCAGCCATGTTCACCCCTTGCACGAA
TATTTGTACTATACTATAATGTACTATTACTATTAA
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