prot_H-elongata_contig117326.1359.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117326.1359.1
Unique Nameprot_H-elongata_contig117326.1359.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
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BLAST of mRNA_H-elongata_contig117326.1359.1 vs. uniprot
Match: UPI001CFA2F06 (pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like isoform X1 n=4 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA2F06)

HSP 1 Score: 48.9 bits (115), Expect = 4.230e-5
Identity = 20/69 (28.99%), Postives = 40/69 (57.97%), Query Frame = 0 
Query:    5 DLNLQPSVSTYNAVLKSCVRGKNYSRALTTMTDLRKSGKRPEQKTWELLVEACVVCGRWECAVEVVRDM 73
            DL L+P +  Y AVL +CV+ KN+  A   +  +++ G++P   T+ L++E  +  G++    +  R++
Sbjct:   86 DLQLEPDIVVYTAVLNACVKRKNWEGAFWVLQQIKEKGQKPSASTYGLVMEVMLAFGKYNLVHDFSREV 154
[Close]
BLAST of mRNA_H-elongata_contig117326.1359.1 vs. uniprot
Match: UPI001F5DC7BA (pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like isoform X1 n=3 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DC7BA)

HSP 1 Score: 48.9 bits (115), Expect = 8.510e-5
Identity = 23/64 (35.94%), Postives = 36/64 (56.25%), Query Frame = 0 
Query:    5 DLNLQPSVSTYNAVLKSCVRGKNYSRALTTMTDLRKSGKRPEQKTWELLVEACVVCGRWECAVE 68
            D  L+P +  YNAVL SCV+ K +      +  L++   RP   T+ L++EA +VCG++    E
Sbjct:  723 DPRLEPDLIVYNAVLNSCVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEAMLVCGKYNLVYE 786
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117326.1359.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001CFA2F064.230e-528.99pentatricopeptide repeat-containing protein At1g30... [more]
UPI001F5DC7BA8.510e-535.94pentatricopeptide repeat-containing protein At1g30... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..78
e-value: 2.1E-14
score: 55.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 5..58
e-value: 2.6E-7
score: 30.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 14..45
e-value: 5.6E-5
score: 21.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 46..78
score: 8.024
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 11..45
score: 9.69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117326contigH-elongata_contig117326:485..718 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117326.1359.1mRNA_H-elongata_contig117326.1359.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117326 485..718 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117326.1359.1 ID=prot_H-elongata_contig117326.1359.1|Name=mRNA_H-elongata_contig117326.1359.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
DWSRDLNLQPSVSTYNAVLKSCVRGKNYSRALTTMTDLRKSGKRPEQKTW
ELLVEACVVCGRWECAVEVVRDMYGEEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat