mRNA_H-elongata_contig60493.13594.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60493.13594.1
Unique NamemRNA_H-elongata_contig60493.13594.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60493.13594.1 vs. uniprot
Match: D8LTL8_ECTSI (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL8_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.380e-23
Identity = 52/87 (59.77%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    1 KVHRMVQETFPFVKTSTERGPGDAVIIVCARAEVYPELRKLLSEFDLEALQRLVNRGPNVATGSKENVTLACDADRDHRTKVHRAIA 261
            +VHR VQETFPF+KT+TE+ P  +V +VC +A   P LR LLS  DLEALQRLVNRGP+   G+   VTL+ D DR +RT VHRAI+
Sbjct:  215 RVHRAVQETFPFIKTTTEKAPDGSVTVVCTQASPLPALRGLLSGPDLEALQRLVNRGPS-GKGADSGVTLSSDMDRANRTLVHRAIS 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60493.13594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTL8_ECTSI3.380e-2359.77TRUD domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60493contigH-elongata_contig60493:119..1061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue3.6e-17
Seed eggNOG ortholog2880.D8LTL8
KEGG koko:K06176
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0585@1,KOG2339@2759
EC5.4.99.27
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons3
Model size262
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60493.13594.1prot_H-elongata_contig60493.13594.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60493 119..1049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.5459223-CDS-H-elongata_contig60493:118..2241622930979.5459223-CDS-H-elongata_contig60493:118..224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60493 119..224 -
1691679648.9480908-CDS-H-elongata_contig60493:118..2241691679648.9480908-CDS-H-elongata_contig60493:118..224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60493 119..224 -
1622930979.5733259-CDS-H-elongata_contig60493:636..7491622930979.5733259-CDS-H-elongata_contig60493:636..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60493 637..749 -
1691679648.957751-CDS-H-elongata_contig60493:636..7491691679648.957751-CDS-H-elongata_contig60493:636..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60493 637..749 -
1622930979.5899906-CDS-H-elongata_contig60493:1019..10491622930979.5899906-CDS-H-elongata_contig60493:1019..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60493 1020..1049 -
1691679648.9657474-CDS-H-elongata_contig60493:1019..10491691679648.9657474-CDS-H-elongata_contig60493:1019..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60493 1020..1049 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.6079586-UTR-H-elongata_contig60493:1049..10611622930979.6079586-UTR-H-elongata_contig60493:1049..1061Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60493 1050..1061 -
1691679648.9734623-UTR-H-elongata_contig60493:1049..10611691679648.9734623-UTR-H-elongata_contig60493:1049..1061Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60493 1050..1061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60493.13594.1

>prot_H-elongata_contig60493.13594.1 ID=prot_H-elongata_contig60493.13594.1|Name=mRNA_H-elongata_contig60493.13594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MVQETFPFVKTSTERGPGDAVIIVCARAEVYPELRKLLSEFDLEALQRLV
NRGPNVATGSKENVTLACDADRDHRTKVHRAIA
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mRNA from alignment at H-elongata_contig60493:119..1061-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60493.13594.1 ID=mRNA_H-elongata_contig60493.13594.1|Name=mRNA_H-elongata_contig60493.13594.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=943bp|location=Sequence derived from alignment at H-elongata_contig60493:119..1061- (Himanthalia elongata Himel1 dioecious)
AAAGTGCATCGCATGGTACAAGAGACGTTTCCTTTCGTGAAGGTGAGGTG
AGGGAGAGAGGCCCCCGCATGTGGTGAAAACGCGAAAACAAGATCCGCGA
TAATTCAGAGCGTACTCCCCTCGTCCTCACCATCGACGATTTTAAGAGTC
GCGTGAGACGCGCCTGCTCGTCTAGAAAGGTGGGATATTTTATGCCCCCC
TTTTTTGAGGGCATGGACAGCACGCCTCCATTTCGGTAGCAAATCATAAT
CGGGATAAAGTGCTCTCAAACGTTGTCGGTATCCTCCGGCAACACTACGC
TACCGTCTACAGACGTCTACAGAGAGAGGCCCGGGAGACGCCGTCATCAT
CGTGTGCGCCCGGGCCGAGGTCTACCCGGAGCTGCGTAAGCTTCTGTCAG
AGTTCGATCTGGAGGCCCTCCAAAGGTAACTCGACTCGGTCGGGAGGTAA
GGTAGACGCAAGTCACGTATTCGCTCACCTCGGGAGTTACGAGCGTTACT
ACGAGTGAGCACTGCTCGCCAGTCAGGCGCTTCCTGGAGATGTGTCTTGA
GACGTACCGCAGGTTTCGTCAAGGCGTGTGGAATTCGCCTAGTGTGCGTA
GTGGCATGCCTCCGTGGAGAGGAGGTATGGTACGGAAAGCGCCGGTAGTC
GATGTCACCTGTTCGAAGCCCTGATGAAGCCCTCGTGGGCATGATGATTC
CTGCAGCTGAATTGTCGACACTAAGGATTGGTGGGGGGGCAACAGTGCCC
TAAGATTCGCGGAAAGACAGCGCAACCAAGGCTCGAATTTCGACATTCTT
GTCCGGTTTGCGCCCTCCCCCCTCGCGCTGCGCCCAGGCTGGTGAATCGC
GGCCCCAACGTCGCAACTGGGAGCAAGGAGAACGTAACTCTTGCTTGCGA
CGCGGATCGGGATCACCGAACGAAAGTCCACCGAGCGATCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig60493:119..1061-

>mRNA_H-elongata_contig60493.13594.1 ID=mRNA_H-elongata_contig60493.13594.1|Name=mRNA_H-elongata_contig60493.13594.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig60493:119..1061- (Himanthalia elongata Himel1 dioecious)
ATGGTACAAGAGACGTTTCCTTTCGTGAAGATGGTACAAGAGACGTTTCC
TTTCGTGAAGACGTCTACAGAGAGAGGCCCGGGAGACGCCGTCATCATCG
TGTGCGCCCGGGCCGAGGTCTACCCGGAGCTGCGTAAGCTTCTGTCAGAG
TTCGATCTGGAGGCCCTCCAAAGACGTCTACAGAGAGAGGCCCGGGAGAC
GCCGTCATCATCGTGTGCGCCCGGGCCGAGGTCTACCCGGAGCTGCGTAA
GCTTCTGTCAGAGTTCGATCTGGAGGCCCTCCAAAGGCTGGTGAATCGCG
GCCCCAACGTCGCAACTGGGAGCAAGGAGAACGTAACTCTTGCTTGCGAC
GCGGATCGGGATCACCGAACGAAAGTCCACCGAGCGATCGCAGCTGGTGA
ATCGCGGCCCCAACGTCGCAACTGGGAGCAAGGAGAACGTAACTCTTGCT
TGCGACGCGGATCGGGATCACCGAACGAAAGTCCACCGAGCGATCGCA
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