mRNA_H-elongata_contig60489.13592.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60489.13592.1
Unique NamemRNA_H-elongata_contig60489.13592.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: D8LSB1_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB1_ECTSI)

HSP 1 Score: 436 bits (1122), Expect = 5.250e-145
Identity = 199/313 (63.58%), Postives = 237/313 (75.72%), Query Frame = 1
Query:    1 MYYSNQASDLNPQLRSVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCDMVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPTCNDFGSCKDMEYFASTATTNGETTP-YTYDLWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVTDVQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEATPW 936
            +Y    AS LNP L S  GTK  +ECS+RG CN  TGHCMCYSKF SSDG G  GD+GDCGYYD  DPPTNC+ ATP+WGS +++CSG G+CD  T RCNCT+ Y GGACEL++C+S VAWFEEA W+ +S G +GGRT   ++CSAGGVCDESTG+C+CRS +F G  C +M CPTCND G+CKDMEYFA+T  +NGE    YTYDLWD+ K+RSC C R+  V   F   S T+RGPYALADTDS+G++CSL RCPTGDH HT GVTD+Q VNCT   GVFTLSF G TT E++Y ++    EAALEATPW
Sbjct:  364 VYAKGHASGLNPHLFSQIGTKDAKECSDRGSCNRQTGHCMCYSKFSSSDGMGGEGDMGDCGYYDSYDPPTNCTTATPMWGSTSALCSGVGNCDQETWRCNCTESYTGGACELRDCDSGVAWFEEAAWNVSS-GAEGGRTGLSVQCSAGGVCDESTGICSCRSGMFAGDACEVMDCPTCNDVGTCKDMEYFAATIISNGEAQEGYTYDLWDANKMRSCWCNRSMTVDNMFSGISTTHRGPYALADTDSHGYDCSLGRCPTGDHYHTPGVTDIQRVNCTAGLGVFTLSFRGETTVELDYFISAAGLEAALEATPW 675          
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: F0XX10_AURAN (EGF-like domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX10_AURAN)

HSP 1 Score: 186 bits (473), Expect = 7.330e-50
Identity = 129/347 (37.18%), Postives = 166/347 (47.84%), Query Frame = 1
Query:   22 SDLNPQLRSVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDP---------------------ADPPTNCSIATPLWGS--ATSICSGAGDCDMVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDEL-LRCSAGGVCDESTGVCNCRSD--IFTGTDCALMACPT-----CNDFGSCKDMEYFASTATT---NGETTPYTY-DLWDSKKIRSCSCER------THGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVTDVQLVNCTGAS-GVFTLSFHGATT-TEMNYDVTVEDFEAALEATP 933
            S ++  + SV GT+   ECSNRG C+   G C CY+ F SSDG+G +G + DCGY  P                     A+ P  C  ATPLW +    ++CSG G CD     CNCT GY G ACE K C +  AW+ EA      VG D G        CS  G+CD S+G C+C  D  +  G  C  MAC       C  FG C  M   A  A     +GE     Y + WD+  +  C C        TH  G   P     YRGP+A   T   G+ CS A CPTGD+ +T GV +VQ +NC+ A+ G F ++F GA     + +  +  + EA LEA P
Sbjct:  309 STVHAAVCSVAGTRERAECSNRGVCDRSVGVCDCYTGFGSSDGRGGAGLVADCGYLSPNASVAYEYPRDYARWADAAGGAEGP--CPRATPLWNTNLPPTVCSGVGVCD-ADKFCNCTAGYEGSACEYKTCPTGRAWWGEA------VGDDPGDAHRPGATCSNKGLCDRSSGNCDCDDDFGVVGGDACGDMACEVNSTRECGAFGHCATMAELAQNALLFGDHGEVRRVNYSEPWDADLVTGCKCHASTSDYPTHDFGAD-PVNQLQYRGPFAYTYTGWTGYQCSHAFCPTGDNPYTWGVNEVQALNCSLATDGAFNVTFRGAPEPVRVPWWASAAELEARLEALP 645          
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A024U9M1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9M1_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.760e-39
Identity = 105/327 (32.11%), Postives = 144/327 (44.04%), Query Frame = 1
Query:   10 SNQASDLNPQLR---SVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCD-MVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-CNDFGSCKDMEYFASTATTNGETTPYTYD-------LWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHT-------VGVTDVQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEATP 933
            ++ ++ ++P L    + EGTK    CSNRG C+  +G C C+S FFSSDG G+ G  GDCG+   A   T C         A   CSG G C    T  C C  G+ GG C  + C    AWF+       + G        L+ CS  G+CD S G C C    FTG  C  M CP  C+  G+C+ ++  A  +  NG+   +TY         WD  +++ C C   +                         GF+CS   CPTGD   T            +Q+V CTG +G FTL F   +T  + + +T  +  AAL A P
Sbjct:  280 THSSAGMSPTLTITTATEGTKENAFCSNRGLCDRTSGICACFSNFFSSDGNGNIGTRGDCGFAVAA--ITQCP-------GAVLACSGHGICQGPPTYTCICASGFQGGDCSERICPVGKAWFDMPHSPQGAHG--------LVECSNAGLCDRSKGECVC-DPRFTGASCNRMVCPNECSGHGTCQTIQSMAGRSVINGDPLRFTYGSIPNHFPTWDFDQMQGCVCNPGYA------------------------GFDCSKLTCPTGDDPVTRVDANNRPQTNTIQVVQCTGTTGTFTLGFRAQSTPALPFSITPANLAAALHALP 564          
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: W4G505_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G505_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.270e-38
Identity = 104/312 (33.33%), Postives = 136/312 (43.59%), Query Frame = 1
Query:   46 SVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCD-MVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-CNDFGSCKDMEYFASTATTNGETT-------PYTYDLWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVTD-------VQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEATP 933
            +V+GTK    CSNRG C+  +G C C+  FFSSDG G+ G  GDCGY          S  T   GS  + CSG G C    T  C C  G+ GG C  + C    AWF+        +  D      L  CS  G CD S G C C    FTG  C  M CP  C+  G+C+ ++  A  +  NG+         P  Y  WD  +++ C C   +                     TD   F+CS   CPTGD   T   T        +Q+V C G +G FTL F G TT  +++ ++      AL+A P
Sbjct:  286 AVDGTKENAFCSNRGLCDRTSGICACFMSFFSSDGNGNIGTRGDCGYA--------FSAITQCPGSVLA-CSGHGICQGPPTYTCICASGFQGGDCSERICPVGKAWFD--------MPFDAQGAHALAECSNAGTCDRSKGECVC-DPRFTGASCNRMVCPNECSGHGTCQTIQSMAGLSVINGDPVKLTYGAIPNNYPTWDFDQLQGCVCNPGY---------------------TD---FDCSKFTCPTGDDPVTRMDTKNRPQANTIQVVQCIGTTGTFTLGFRGQTTPALSFSISAASLTVALQALP 555          
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A1V9YCU9_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCU9_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.860e-35
Identity = 107/317 (33.75%), Postives = 132/317 (41.64%), Query Frame = 1
Query:   46 SVEGTKVVQECSNRGYCNHLTGHCMCY----SKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSI-CSGAGDCD-MVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-------CNDFGSCKDMEYFASTATTNGETTPYTYDL-------WDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVTD-VQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEATP 933
            SV GTK    CSNRGYCN LTG C CY      + SSDG G  G  GDCG      P        P+ G    + CSG G C       C C  G+  G C L+ C    +WF     S+N++         L+ CS  G CD ++G C C +  FTG  C  M CP        C   G C  +   A+  T +G    +TY         WD+ KI+ C C+   G                        G +CSL  CPTGD   T G  D VQ V CT   G+F L F G  T  + ++  V D   AL   P
Sbjct:  296 SVVGTKESLPCSNRGYCNSLTGVCSCYLYPMPGYRSSDGYGREGLRGDCGA-----PDNRNFYGGPIAGCPGYLPCSGHGMCTGSPAYACKCAAGWTSGDCSLRTCPLGYSWFNLP--SANNIAHQ-----SLVACSNAGECDPTSGRCECFAP-FTGAACEFMRCPQGPDNVAPCAKHGVCLTLSELAAATTIDGVPAQFTYGATPNNPLTWDALKIQGCKCDAGFG------------------------GHDCSLRLCPTGDDPVTTGQVDAVQRVQCTAIGGIFQLGFRGFFTDALAFNAPVGDVADALLRLP 575          
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A7S4DCI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCI4_HETAK)

HSP 1 Score: 126 bits (316), Expect = 1.350e-28
Identity = 98/309 (31.72%), Postives = 132/309 (42.72%), Query Frame = 1
Query:   46 SVEGTKVVQECSNRGYCNHLTGHCMCY----SKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCDMVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDE-----LLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-CNDFGSCKDMEYFASTATTNGETTPYTYDLWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVG-VTDVQLVNCTGASGVFTL----SFHGATTTE-MNYDVTVEDFEAALE 924
            S    K    C++RG+C+   G C CY     +F SSDG G++G  GDCG  DP D        T   G  T  C+  G C+  + RC C +G+ GG C  + C    AWF            D  R DE     ++ CSA G+CD S+G C C +D F G  C  +ACP  CN  G C  +   A   +            W             +G  +  P T +  R    L D   +G +C+   CP GD   + G   + QLV C    G FTL    SF+   TTE +  + +  +  AALE
Sbjct:  179 SQASEKENSPCADRGWCSSAEGTCECYFYPLPRFRSSDGNGNAGVRGDCGSMDPIDDGE----VTECTGEIT--CNTRGACNEDSYRCECEEGWMGGDCSERTCPKGKAWF------------DFPRADEEAHTAVVECSARGLCDRSSGECEC-ADNFYGAACEHLACPNDCNGNGQCMSVRELAGKISEGA---------W------------VYGAALNSPATWDADRVHGCLCDEGYWGHDCARRTCPHGDDPGSYGQAKETQLVECHAGGGAFTLTYQSSFYTTKTTEGIPANSSALEVAAALE 447          
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A5A8CNF0_CAFRO (Uncharacterized protein n=6 Tax=Sar TaxID=2698737 RepID=A0A5A8CNF0_CAFRO)

HSP 1 Score: 123 bits (308), Expect = 1.680e-27
Identity = 91/291 (31.27%), Postives = 121/291 (41.58%), Query Frame = 1
Query:   46 SVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCDMVTMRCNCTDGYAGGACELKECNSAVAWFEEA--------------------TWSSNSVGTDGGR------TDELLRCSAGGVCDESTGVCNCRSDIFTGTDCA----------------LMACPTCNDFGSCKDMEYFASTATTNGETTPYT-----YDLWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTG 777
            S +G++V+QECS RG+CN +TG C CYS++  SD  G   D G     D       CS +T       + C G G C   T  C CT G+ G ACE + C +A AWF+EA                    T S++ V     R      +  L  C   GVC+ ++GVC C ++ FTG+DC                       C+  GSC  M   A+ +        Y      YD WD  K   CSCER              Y GPY  +  D +G +C  + CP G
Sbjct:  705 SRDGSRVLQECSGRGFCNRVTGECACYSRWGDSDRVGVHQDAGFGQRKD-------CSRSTAHINDCPASCLGRGLCRGPTFVCACTSGFTGYACESRTCPTAAAWFDEARPVPDTGNTTSFVNSAVLSATDSASGVTYSAHREQGLTSSHRLATCGGQGVCNGASGVCVC-AEGFTGSDCGSTXXXXXXXXXXXXXXXXXXXXCSGHGSCISMGQAANASRDAITKESYVGEVLPYDEWDKDKNFGCSCERA------------AYTGPYHDSRGDYFGPDCKRSTCPAG 975          
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A7S2BPD4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BPD4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.420e-22
Identity = 79/249 (31.73%), Postives = 108/249 (43.37%), Query Frame = 1
Query:  256 CSGAGDCDMVT--MRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT------CNDFGSCKDMEYFASTATTNGETTPYTYD--------LWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALAD-TDSYGFNCSLARCPTGDHIHTVGVT---------DVQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALE 924
            C G G C  +    +C C DGY G  C++ EC +  AWF+EA  ++++             CS  G C+  TG C C  D F G  C  M+CPT      C+  G C  M   A    TNG  TP +Y          WD+ KI  C C+            S  Y+ P  LA+ +D  G++CS   CP+G     VG           ++Q + CT  SG FTLSF   +T  +  + T    +  LE
Sbjct:  127 CYGHGYCAGLETDFKCECDDGYFGN-CQMLECPTGPAWFDEAIMNNDA--------HNEAECSNMGTCEYKTGTCACN-DGFEGAACERMSCPTDELGNVCSGHGQCLSMADAAKLTRTNGVLTPISYGGFNMSNATAWDADKIFGCVCD------------SKGYQLPGQLANLSDWTGYDCSRRTCPSGTKRSNVGPGQNNAYNSSFEIQNMTCTATSGTFTLSFRSESTEPIASNATKAILKQRLE 353          
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A482R5Z6_9ARCH (EGF-like domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R5Z6_9ARCH)

HSP 1 Score: 103 bits (258), Expect = 1.370e-21
Identity = 59/145 (40.69%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   49 VEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCDMV-TMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNC 480
             EG+     CSNRG C+  TG C C++ F  SDG G++G   DCG+   A   + C +     G  ++ C+G G C    T  C C  GYAGGACE +EC    AW++EA  S+N   T          CSA GVC+ +TGVC C
Sbjct:  258 TEGSTESAACSNRGVCDTTTGECTCFTGFGPSDGSGATGTRPDCGFASLA--TSACPVPPLALGLGSAECAGRGICSGAPTYTCTCFTGYAGGACEERECPRGRAWWDEAV-SANVAHTT------YQECSARGVCNRATGVCTC 393          
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: W4FCZ9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FCZ9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.470e-21
Identity = 84/256 (32.81%), Postives = 110/256 (42.97%), Query Frame = 1
Query:  226 TPLWGSATSI--------CSGAGDCDMVTMRC--NCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-CNDFGSCKDMEYFASTATTNGETTPYTYDL-WDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVT----------DVQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEA 927
            T LW   TS+        CSG G C +V   C   C  G+AG  C  + C    +W      SS +  TD     ++  CS  GVCDES+GVC C    FTG  C  +ACP  C++ G C+ ++ F +T    G   P  Y   WDS  +  C C                            YG +CS  RCPTGD   T G T          + Q V+C+   G FTLSF G TT  +N +  V+   + L+A
Sbjct:    8 TVLWTVLTSVAGGCCNNDCSGRGKCTIVGSGCICQCFAGFAGADCSRRACPVGKSW------SSFAAATDVAHLPDV--CSNRGVCDESSGVCQCDPG-FTGAACDRLACPLGCSNRGECRSIK-FQATQKDKGMPPPVVYTANWDSDMVYGCLCH------------------------DGFYGADCSQRRCPTGDDPLT-GFTGDPIFGQQFNEKQSVSCSSTGGSFTLSFRGQTTVPINSNDPVDAMTSKLQA 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSB1_ECTSI5.250e-14563.58EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
F0XX10_AURAN7.330e-5037.18EGF-like domain-containing protein n=1 Tax=Aureoco... [more]
A0A024U9M1_9STRA3.760e-3932.11Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4G505_9STRA3.270e-3833.33Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1V9YCU9_9STRA1.860e-3533.75Uncharacterized protein n=2 Tax=Achlya hypogyna Ta... [more]
A0A7S4DCI4_HETAK1.350e-2831.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5A8CNF0_CAFRO1.680e-2731.27Uncharacterized protein n=6 Tax=Sar TaxID=2698737 ... [more]
A0A7S2BPD4_9STRA3.420e-2231.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482R5Z6_9ARCH1.370e-2140.69EGF-like domain-containing protein (Fragment) n=1 ... [more]
W4FCZ9_9STRA1.470e-2132.81Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60489contigH-elongata_contig60489:1210..3266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score438.3
Seed ortholog evalue2.9e-120
Seed eggNOG ortholog2880.D8LSB1
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEGF-like domain, extracellular
Ec32 orthologEc-12_004180.1
Exons5
Model size939
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60489.13592.1prot_H-elongata_contig60489.13592.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60489 1210..3266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.160192-CDS-H-elongata_contig60489:1209..14711622930979.160192-CDS-H-elongata_contig60489:1209..1471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 1210..1471 +
1691679648.7702153-CDS-H-elongata_contig60489:1209..14711691679648.7702153-CDS-H-elongata_contig60489:1209..1471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 1210..1471 +
1622930979.1755621-CDS-H-elongata_contig60489:1753..18301622930979.1755621-CDS-H-elongata_contig60489:1753..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 1754..1830 +
1691679648.7950084-CDS-H-elongata_contig60489:1753..18301691679648.7950084-CDS-H-elongata_contig60489:1753..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 1754..1830 +
1622930979.197969-CDS-H-elongata_contig60489:2268..25051622930979.197969-CDS-H-elongata_contig60489:2268..2505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 2269..2505 +
1691679648.808481-CDS-H-elongata_contig60489:2268..25051691679648.808481-CDS-H-elongata_contig60489:2268..2505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 2269..2505 +
1622930979.2138393-CDS-H-elongata_contig60489:2661..28491622930979.2138393-CDS-H-elongata_contig60489:2661..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 2662..2849 +
1691679648.8194962-CDS-H-elongata_contig60489:2661..28491691679648.8194962-CDS-H-elongata_contig60489:2661..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 2662..2849 +
1622930979.2285333-CDS-H-elongata_contig60489:3091..32661622930979.2285333-CDS-H-elongata_contig60489:3091..3266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 3092..3266 +
1691679648.8347125-CDS-H-elongata_contig60489:3091..32661691679648.8347125-CDS-H-elongata_contig60489:3091..3266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60489 3092..3266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60489.13592.1

>prot_H-elongata_contig60489.13592.1 ID=prot_H-elongata_contig60489.13592.1|Name=mRNA_H-elongata_contig60489.13592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp
MYYSNQASDLNPQLRSVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDG
KGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCDMVTMRCN
CTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGV
CDESTGVCNCRSDIFTGTDCALMACPTCNDFGSCKDMEYFASTATTNGET
TPYTYDLWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFN
CSLARCPTGDHIHTVGVTDVQLVNCTGASGVFTLSFHGATTTEMNYDVTV
EDFEAALEATPW*
back to top

mRNA from alignment at H-elongata_contig60489:1210..3266+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60489.13592.1 ID=mRNA_H-elongata_contig60489.13592.1|Name=mRNA_H-elongata_contig60489.13592.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2057bp|location=Sequence derived from alignment at H-elongata_contig60489:1210..3266+ (Himanthalia elongata Himel1 dioecious)
ATGTACTATTCAAACCAGGCTAGCGATCTCAACCCTCAGCTGCGGAGTGT AGAGGGAACCAAGGTTGTCCAAGAATGCTCCAATCGTGGGTATTGCAACC ATCTTACGGGGCACTGCATGTGCTACTCCAAGTTCTTCAGCTCAGACGGG AAGGGTAGTTCCGGGGACCTAGGAGATTGTGGGTACTACGATCCTGCCGA CCCTCCCACGAACTGCTCGATTGCAACGCCGTTGTGGGGGTCCGCCACAA GTATTTGCAGTGGTGAGCCGCGCACACGGTCCACAGACGTGTCTCTTTAT GATGATGTGGAAATTATCGATGTACGAGTGCCACACACGTCAATGTCGAG CCCAACGCAAGACAGTAGACCTTTGCGTCATGACGACAGAACCTTGTTAA ATGGCGACGGCAAATCGTTACAATCTCGCAGTCGGTCACGTGAGACGTAC CGGGTGAAAAACGTCAAACAATCCTTACCTTTCCTCCATAGGCAGAGGGT ATCTTACGACCATCGTGTGCCTGCGTTGCTCTCCGGATCAATAGGAGCCG GGGACTGTGATATGGTAACGATGCGCTGCAACTGCACGGATGGCTACGCA GGCGGTGCCTGCGAGCTGAAGGTCCAGCAAACGATCAGTATATCACTATT AATAGAGCCCAGCAGTAGGGGGGGCATTTTCAATCGAGTAGTGTTAGTAC AATGCTATCGTTTGGAAGCACGCAAGATGACTGCAGAAATTATTGCGCGG GGGCTATTTTCTTCTCTCCCTAGGCAGCAGCAGGTGGAAATCACCTCGAC TACTTTCTACACACCCCACGTTGGCCAATATCGCAAAACGTTGCCAAAAG TAGAGCGAGCTAGATGGATAATGCCTGATCAGGAACGGGTGCATTTCACT GGGGTCTTCTACGCTCGTGGGAATCCATCCAACCCGGACACAGACGACAC AACGTAATGATACATTGCCAGGTTGTTTTCCTTTTGGTCGCTGTGTCACT CCCTCAGCATTTATCTCCTTCGACGCCCGTCATCTTCTTAACACCGCATG GTCTCAAAGGAATGCAACAGCGCTGTGGCGTGGTTTGAAGAAGCAACATG GAGTTCCAATAGCGTAGGGACCGACGGAGGCCGAACGGATGAGTTACTTC GATGTTCCGCTGGGGGCGTTTGCGACGAATCCACCGGGGTTTGTAATTGC CGGAGCGATATTTTTACCGGCACCGACTGTGCGCTCATGGCTTGTCCGAC GTGTAACGACTTCGGGAGTTGCAAGGATATGGAGTACTTCGCGTCGGTGA GTTCCGTTTCTCTTGCAGGTACGATGATGGGAGAGTACTTCGAGAAATAA ATACCCTTTAACCTTGCCAATACTTCCTCGAAGAAGATCAAGCCCTATTT ATTTATAACCTCGAGTGGCGTACCATGCTTTTTTTTCTTCATGCTCCACC AGACAGCGACGACCAACGGAGAGACTACACCGTACACGTACGATCTGTGG GACTCCAAAAAGATACGCTCGTGTTCGTGCGAACGCACGCATGGTGTCGG CATATTCTTTCCACAGACGTCAAATACATACCGAGGCCCGTATGCTCTCG CCGACACGGATTCGTACGGCTTCAACTGTAGCCTAGCAAGGTCGGCCTCA AAATACACGAGTCTTCTTTTATCTGGTGATTGTGCCAATATTTGAGTTCC ACAGTAAGAGACCAGGGTCCGACGTTATAACCCCCGTTGGTTTGGAGGGT GATATCCGTCGATAAACCTATTCGATCATGATCACCTTCTGGTGAATACC GAATGATACAATCACTGCTCCTAAGGCAAAAATACTTCGCGCAGTATTGC GATATTTCACCACAACTCGTGTCTCCAACTAGGTGCCCTACTGGAGATCA CATCCACACGGTCGGCGTTACCGATGTGCAGCTCGTGAATTGCACCGGTG CATCGGGCGTTTTTACGCTAAGTTTTCACGGCGCGACGACGACAGAAATG AACTACGACGTCACCGTTGAAGATTTTGAGGCTGCCCTCGAGGCGACGCC GTGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig60489:1210..3266+

>mRNA_H-elongata_contig60489.13592.1 ID=mRNA_H-elongata_contig60489.13592.1|Name=mRNA_H-elongata_contig60489.13592.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig60489:1210..3266+ (Himanthalia elongata Himel1 dioecious)
ATGTACTATTCAAACCAGGCTAGCGATCTCAACCCTCAGCTGCGGAGTGT
AGAGGGAACCAAGGTTGTCCAAGAATGCTCCAATCGTGGGTATTGCAACC
ATCTTACGGGGCACTGCATGTGCTACTCCAAGTTCTTCAGCTCAGACGGG
AAGGGTAGTTCCGGGGACCTAGGAGATTGTGGGTACTACGATCCTGCCGA
CCCTCCCACGAACTGCTCGATTGCAACGCCGTTGTGGGGGTCCGCCACAA
GTATTTGCAGTGATGTACTATTCAAACCAGGCTAGCGATCTCAACCCTCA
GCTGCGGAGTGTAGAGGGAACCAAGGTTGTCCAAGAATGCTCCAATCGTG
GGTATTGCAACCATCTTACGGGGCACTGCATGTGCTACTCCAAGTTCTTC
AGCTCAGACGGGAAGGGTAGTTCCGGGGACCTAGGAGATTGTGGGTACTA
CGATCCTGCCGACCCTCCCACGAACTGCTCGATTGCAACGCCGTTGTGGG
GGTCCGCCACAAGTATTTGCAGTGGAGCCGGGGACTGTGATATGGTAACG
ATGCGCTGCAACTGCACGGATGGCTACGCAGGCGGTGCCTGCGAGCTGAA
GGAGCCGGGGACTGTGATATGGTAACGATGCGCTGCAACTGCACGGATGG
CTACGCAGGCGGTGCCTGCGAGCTGAAGGAATGCAACAGCGCTGTGGCGT
GGTTTGAAGAAGCAACATGGAGTTCCAATAGCGTAGGGACCGACGGAGGC
CGAACGGATGAGTTACTTCGATGTTCCGCTGGGGGCGTTTGCGACGAATC
CACCGGGGTTTGTAATTGCCGGAGCGATATTTTTACCGGCACCGACTGTG
CGCTCATGGCTTGTCCGACGTGTAACGACTTCGGGAGTTGCAAGGATATG
GAGTACTTCGCGTCGGAATGCAACAGCGCTGTGGCGTGGTTTGAAGAAGC
AACATGGAGTTCCAATAGCGTAGGGACCGACGGAGGCCGAACGGATGAGT
TACTTCGATGTTCCGCTGGGGGCGTTTGCGACGAATCCACCGGGGTTTGT
AATTGCCGGAGCGATATTTTTACCGGCACCGACTGTGCGCTCATGGCTTG
TCCGACGTGTAACGACTTCGGGAGTTGCAAGGATATGGAGTACTTCGCGT
CGACAGCGACGACCAACGGAGAGACTACACCGTACACGTACGATCTGTGG
GACTCCAAAAAGATACGCTCGTGTTCGTGCGAACGCACGCATGGTGTCGG
CATATTCTTTCCACAGACGTCAAATACATACCGAGGCCCGTATGCTCTCG
CCGACACGGATTCGTACGGCTTCAACTGTAGCCTAGCAAGACAGCGACGA
CCAACGGAGAGACTACACCGTACACGTACGATCTGTGGGACTCCAAAAAG
ATACGCTCGTGTTCGTGCGAACGCACGCATGGTGTCGGCATATTCTTTCC
ACAGACGTCAAATACATACCGAGGCCCGTATGCTCTCGCCGACACGGATT
CGTACGGCTTCAACTGTAGCCTAGCAAGGTGCCCTACTGGAGATCACATC
CACACGGTCGGCGTTACCGATGTGCAGCTCGTGAATTGCACCGGTGCATC
GGGCGTTTTTACGCTAAGTTTTCACGGCGCGACGACGACAGAAATGAACT
ACGACGTCACCGTTGAAGATTTTGAGGCTGCCCTCGAGGCGACGCCGTGG
TAAGTGCCCTACTGGAGATCACATCCACACGGTCGGCGTTACCGATGTGC
AGCTCGTGAATTGCACCGGTGCATCGGGCGTTTTTACGCTAAGTTTTCAC
GGCGCGACGACGACAGAAATGAACTACGACGTCACCGTTGAAGATTTTGA
GGCTGCCCTCGAGGCGACGCCGTGGTAA
back to top