mRNA_H-elongata_contig60488.13591.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60488.13591.1
Unique NamemRNA_H-elongata_contig60488.13591.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60488.13591.1 vs. uniprot
Match: D7G1F6_ECTSI (Elongation of fatty acids protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F6_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.690e-13
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 GSIGVVAALEEWAIGAVNSLKAGDWRSRTFSVISFWGWASVAAYVALVEALPGLLRPFHPLFR 189
            G +  + A   W  G  + L+ G+WRS  F VI FWGWASVA Y+ALVEALP +L+P H +FR
Sbjct:  353 GVLPTLQACLHWMKGLWSVLEEGEWRSVRFGVIEFWGWASVAGYLALVEALPVMLQPLHGVFR 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60488.13591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F6_ECTSI5.690e-1352.38Elongation of fatty acids protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60488contigH-elongata_contig60488:358..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue5.4e-11
Seed eggNOG ortholog2880.D7G1F6
EggNOG free text desc.fatty acid elongation, saturated fatty acid
EggNOG OGsKOG3071@1,KOG3071@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.1215532-CDS-H-elongata_contig60488:357..5641622930979.1215532-CDS-H-elongata_contig60488:357..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60488 358..564 +
1691679648.7525716-CDS-H-elongata_contig60488:357..5641691679648.7525716-CDS-H-elongata_contig60488:357..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60488 358..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60488.13591.1prot_H-elongata_contig60488.13591.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60488 358..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60488.13591.1

>prot_H-elongata_contig60488.13591.1 ID=prot_H-elongata_contig60488.13591.1|Name=mRNA_H-elongata_contig60488.13591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
GSIGVVAALEEWAIGAVNSLKAGDWRSRTFSVISFWGWASVAAYVALVEA
LPGLLRPFHPLFRCGVRD*
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mRNA from alignment at H-elongata_contig60488:358..564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60488.13591.1 ID=mRNA_H-elongata_contig60488.13591.1|Name=mRNA_H-elongata_contig60488.13591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig60488:358..564+ (Himanthalia elongata Himel1 dioecious)
GGCAGCATCGGCGTCGTCGCCGCGCTTGAGGAGTGGGCAATCGGGGCGGT
TAATTCGCTGAAGGCGGGGGACTGGCGCTCCAGGACGTTCTCCGTGATTA
GTTTCTGGGGATGGGCCTCCGTGGCGGCCTACGTGGCCCTCGTGGAGGCC
CTGCCCGGACTGCTGCGACCGTTTCACCCTCTCTTCAGGTGCGGTGTCCG
TGATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig60488:358..564+

>mRNA_H-elongata_contig60488.13591.1 ID=mRNA_H-elongata_contig60488.13591.1|Name=mRNA_H-elongata_contig60488.13591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig60488:358..564+ (Himanthalia elongata Himel1 dioecious)
GGCAGCATCGGCGTCGTCGCCGCGCTTGAGGAGTGGGCAATCGGGGCGGT
TAATTCGCTGAAGGCGGGGGACTGGCGCTCCAGGACGTTCTCCGTGATTA
GTTTCTGGGGATGGGCCTCCGTGGCGGCCTACGTGGCCCTCGTGGAGGCC
CTGCCCGGACTGCTGCGACCGTTTCACCCTCTCTTCAGGTGCGGTGTCCG
TGATTAGGGCAGCATCGGCGTCGTCGCCGCGCTTGAGGAGTGGGCAATCG
GGGCGGTTAATTCGCTGAAGGCGGGGGACTGGCGCTCCAGGACGTTCTCC
GTGATTAGTTTCTGGGGATGGGCCTCCGTGGCGGCCTACGTGGCCCTCGT
GGAGGCCCTGCCCGGACTGCTGCGACCGTTTCACCCTCTCTTCAGGTGCG
GTGTCCGTGATTAG
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