mRNA_H-elongata_contig60471.13589.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: A0A6H5JTQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ1_9PHAE) HSP 1 Score: 250 bits (639), Expect = 3.090e-74 Identity = 129/186 (69.35%), Postives = 148/186 (79.57%), Query Frame = 1
Query: 1 TIGRAKIEEWGSREGGFSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQVVHLGTCPSLWSLTLAANPVCRDKHYRRCVVNIVPQLISLDEEDI 558
T G ++ E G G SE LR ++GE DL VR L+ VDT TQVDHLG ++P L+ELRL+RGS L+SFRDLGSSL LRVLWLSACGVRHLDG+ ALTGLEELYLAFNDV+DLTSIALHD L+VLDLESN V+DA+Q +HLGTC LWSLTL ANPVCRD HYRR +V VPQL SLDE+D+
Sbjct: 7 TKGAVRVAEAGD---GCSEASLRIITGEEDLRDVRHLALAVDTNTTQVDHLGIVLPLLSELRLERGSVLASFRDLGSSLPNLRVLWLSACGVRHLDGVGALTGLEELYLAFNDVEDLTSIALHDRLEVLDLESNCVKDAEQAIHLGTCSHLWSLTLTANPVCRDLHYRRRMVEAVPQLASLDEKDV 189
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: D8LM99_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM99_ECTSI) HSP 1 Score: 249 bits (636), Expect = 9.070e-74 Identity = 128/186 (68.82%), Postives = 149/186 (80.11%), Query Frame = 1
Query: 1 TIGRAKIEEWGSREGGFSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQVVHLGTCPSLWSLTLAANPVCRDKHYRRCVVNIVPQLISLDEEDI 558
T G ++EE G SE LRR++GE DL VR L+ VDT TQVDHLGT++P LTELRL+RGS L+SFRDLGSSL LRVLWLSACGV HLDG+ ALTGLEELYLAFNDV+DLTSIALHD L+VLDLESN ++DA+Q +HLGTC LWSLTL ANP+CRD +YRR +V VPQL SLDE+D+
Sbjct: 7 TKGAVRVEEPGDE---CSEASLRRITGEEDLRDVRHLALAVDTKTTQVDHLGTVLPLLTELRLERGSVLASFRDLGSSLPNLRVLWLSACGVCHLDGVGALTGLEELYLAFNDVEDLTSIALHDRLEVLDLESNCLKDAEQAIHLGTCSRLWSLTLTANPLCRDHNYRRRMVEAVPQLASLDEKDV 189
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: A0A5D6YP06_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YP06_9STRA) HSP 1 Score: 160 bits (405), Expect = 2.920e-42 Identity = 79/170 (46.47%), Postives = 117/170 (68.82%), Query Frame = 1
Query: 49 FSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQVVHLGTCPSLWSLTLAANPVCRDKHYRRCVVNIVPQLISLDEEDI 558
+E+ L+++SG++DL+ V L VD+ V+ +G L+P L +L+L+ STL SFRDLG+SL L++LW+ G+ LDGI ALTGL+ELYL +ND+ DL+ + LH+ ++V+DLE N + D QV L C L +L L ANPVCR HYR+ + N +PQL +LD++ +
Sbjct: 99 ITEDKLQKLSGKQDLARVTYLQISVDSGKQSVEAIGELLPSLQQLKLQN-STLHSFRDLGTSLHSLQILWVIRSGISDLDGIGALTGLQELYLQYNDISDLSPLTLHEEIQVIDLEGNCIEDIGQVEQLAFCAQLTTLNLEANPVCRIAHYRQIIANFLPQLTTLDDKPV 267
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: A0A1V9YPU2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YPU2_9STRA) HSP 1 Score: 156 bits (395), Expect = 8.160e-41 Identity = 82/172 (47.67%), Postives = 115/172 (66.86%), Query Frame = 1
Query: 43 GGFSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQVVHLGTCPSLWSLTLAANPVCRDKHYRRCVVNIVPQLISLDEEDI 558
G +++ LR++SG++DL+ V L +DT V+ LG L+P L +L+L + S L SFRDLG+SL L+VLW+ GV+ LDGI ALTGL ELYL N++ D++ +++HD L ++DLE+N V D Q+ LG CP L +L L NPV R YR VVN +P L SLD++ I
Sbjct: 671 GDLTQDKLRQISGKQDLAKVTCLEMTIDTVKQSVEALGELLPSLLQLKLHQ-SVLHSFRDLGTSLHSLQVLWVECSGVKDLDGIGALTGLRELYLKGNEIVDISPLSMHDELSIVDLENNQVFDIIQIEQLGLCPQLSALKLLGNPVARIPQYRPIVVNYIPHLKSLDDKAI 841
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: W4G0V7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0V7_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.360e-40 Identity = 83/166 (50.00%), Postives = 113/166 (68.07%), Query Frame = 1
Query: 49 FSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQVVHLGTCPSLWSLTLAANPVCRDKHYRRCVVNIVPQLISLD 546
++E LR++SG++DL+ V L VDT V+ LG L+P L++LRL + S L SFRDLG+SL L++LWL + GV+ LDGI ALTGL ELYL FND+ D++ ++LHD L +LDL+ N V+D Q+ LG C L L LAANPV +YR + +PQL +LD
Sbjct: 64 ITDEKLRQISGKQDLNRVTYLQLTVDTHKQSVEALGELLPSLSQLRLHQ-SVLHSFRDLGTSLHGLQILWLMSSGVKDLDGIGALTGLRELYLQFNDIVDVSPLSLHDELHILDLQGNRVQDIVQIEQLGMCVQLTVLNLAANPVAAIPNYRPIACSYIPQLQTLD 228
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: A0A1V9ZB88_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB88_9STRA) HSP 1 Score: 153 bits (386), Expect = 7.070e-40 Identity = 83/172 (48.26%), Postives = 110/172 (63.95%), Query Frame = 1
Query: 43 GGFSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQVVHLGTCPSLWSLTLAANPVCRDKHYRRCVVNIVPQLISLDEEDI 558
G + + LR++SG++DL+ V L VDT V+ LG L+P L +LRL S L SFRDLG+SL L+VLWL +CGV LDGI ALTGL ELYL N + D++ +++HD L V+DLE N V D Q+ LG CP L +L L NPV YR V + +P L SLD++ +
Sbjct: 67 GDLTHDKLRQLSGKQDLTKVTFLQLTVDTAKQSVEALGELLPSLLQLRLHE-SHLHSFRDLGTSLHSLQVLWLQSCGVTDLDGIGALTGLRELYLQHNAIADISPLSMHDELAVVDLEGNAVLDIVQIEQLGLCPQLSALKLQGNPVAAIPQYRSIVASYIPHLASLDDKPV 237
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: A0A8B6BI57_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BI57_MYTGA) HSP 1 Score: 150 bits (379), Expect = 4.270e-39 Identity = 77/172 (44.77%), Postives = 114/172 (66.28%), Query Frame = 1
Query: 64 LRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQVVHLGTCPSLWSLTLAANPVC---------RDKHYRRCVVNIVPQLISLDEE 552
L+ ++G ++L VR+L +VDT+ T + + G+L+PCLT+L+L S + RDLGSSL +++LW+S CG+ LDGI ++ L E+YL++N++ D++ I++ DNL++LDLE NNV D QV LG C L LTL +NPVC D YR+ V +VPQL LD+E
Sbjct: 65 LKSLTGIQNLDDVRSLELKVDTSDTSLGNFGSLLPCLTQLKLSN-SCIPYIRDLGSSLRTIQILWMSRCGLLELDGISSMISLTEVYLSYNEISDISPISMLDNLQILDLEGNNVEDISQVQFLGMCTQLNRLTLESNPVCVAPSPDSEQEDYDYRQAVKKVVPQLCYLDDE 235
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: T0SCL0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0SCL0_SAPDV) HSP 1 Score: 150 bits (380), Expect = 4.700e-39 Identity = 81/172 (47.09%), Postives = 109/172 (63.37%), Query Frame = 1
Query: 43 GGFSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQVVHLGTCPSLWSLTLAANPVCRDKHYRRCVVNIVPQLISLDEEDI 558
G + + LR++SG+ DL+ V L +DT V+ LG L+P L +LRL S L SFRDLG+SL L+VLWL CGV LDGI ALTGL ELYL N + D++ +++HD L V+DL+ N V D Q+ LG CP L +L L NPV YR V++ +P L +LD++ I
Sbjct: 65 GDLTHDKLRQLSGKSDLTKVTFLQLSIDTGKQSVEALGELLPSLLQLRLHE-SKLHSFRDLGTSLHSLQVLWLERCGVTDLDGIGALTGLRELYLNGNCISDISPLSMHDELSVVDLQGNAVMDIVQIEQLGLCPQLTALKLVENPVASIPQYRAIVISYIPHLTALDDKPI 235
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: A0A485KIX1_9STRA (Aste57867_7880 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIX1_9STRA) HSP 1 Score: 148 bits (373), Expect = 4.080e-38 Identity = 85/183 (46.45%), Postives = 112/183 (61.20%), Query Frame = 1
Query: 49 FSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQV-------------VHLGTCPSLWSLTLAANPVCRDKHYRRCVVNIVPQLISLDEEDI 558
+EE LR++SG++DL+ V L VDT V+ LG L+P +T+LRL + S L SFRDLG+SL L+VLWL GV+ LDGI ALTGL ELYL FN++ D++ +++HD L V+DL+ N V D Q+ H G CP L SL LA NPV YR V + +P L LDE +
Sbjct: 61 ITEEKLRQISGKQDLNKVNYLQLTVDTQKQSVEALGELLPSMTQLRLHQ-SILHSFRDLGTSLHGLQVLWLMRSGVKDLDGIGALTGLRELYLQFNEIADISPLSMHDELHVIDLQGNCVEDIVQLEQLGRSIQVLSTNYHSGLCPHLASLNLADNPVASIPQYRPIVCSYIPHLEKLDERAV 242
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Match: A0A7S0T6A7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T6A7_9CHLO) HSP 1 Score: 138 bits (347), Expect = 4.810e-37 Identity = 73/170 (42.94%), Postives = 105/170 (61.76%), Query Frame = 1
Query: 49 FSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHLGTLMPCLTELRLKRGSTLSSFRDLGSSLIQLRVLWLSACGVRHLDGIEALTGLEELYLAFNDVDDLTSIALHDNLKVLDLESNNVRDADQVVHLGTCPSLWSLTLAANPVCRDKHYRRCVVNIVPQLISLDEEDI 558
FS ++L R++G DL++ L DTT + +G +P L +LRL S L S R GS+ +LRVLW++ G+ L GI +L L+ELY AFN+V D++ +A DNL+V+DLE+N VRD D +LG CP L +L+L NPV +YRR V +P+L LD+ +
Sbjct: 41 FSRQYLSRLAGTDDLASCAFLEMRADTTEDDLSGVGAALPALAQLRLSN-SVLPSARSFGSTFQRLRVLWVARSGLEDLQGIASLVELKELYAAFNEVSDVSPLAELDNLQVVDLEANQVRDRDAADYLGMCPVLTTLSLEGNPVSNRMYYRRLVARAIPRLEVLDDRPV 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60471.13589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60471.13589.1 >prot_H-elongata_contig60471.13589.1 ID=prot_H-elongata_contig60471.13589.1|Name=mRNA_H-elongata_contig60471.13589.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp TIGRAKIEEWGSREGGFSEEFLRRVSGERDLSAVRALSFEVDTTVTQVDHback to top mRNA from alignment at H-elongata_contig60471:2274..3470+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60471.13589.1 ID=mRNA_H-elongata_contig60471.13589.1|Name=mRNA_H-elongata_contig60471.13589.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-elongata_contig60471:2274..3470+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60471:2274..3470+ >mRNA_H-elongata_contig60471.13589.1 ID=mRNA_H-elongata_contig60471.13589.1|Name=mRNA_H-elongata_contig60471.13589.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig60471:2274..3470+ (Himanthalia elongata Himel1 dioecious)back to top |