prot_H-elongata_contig6047.13588.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig6047.13588.1
Unique Name	prot_H-elongata_contig6047.13588.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	104

Homology

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BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.090e-26
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            EI+SL+   VY+LV    VP    V+G+ W  K+K + T K+RLV +GW+Q P  D GGTF+PVCRLQSIRM+ AIAAE D ++  +DV+TAFL AD++E VFV
Sbjct:  324 EIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFV 427

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BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.050e-25
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            EI SL++  V++LV    VP  +K + + W  K K DG+FK RLVVQGW+Q P +DYG TF+PVCRLQSIRM+   A + + E+  MDV TAFL AD+ E VFV
Sbjct:   72 EIASLKERQVHKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFV 175

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BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.620e-24
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            EI SL++  V++LV    VP  +K + + W  K KVDG+FK RLV QGW+Q P +D G T++PVCRLQSIRM+  IA + + E+  MDV TAFL AD+ E VFV
Sbjct:  858 EIASLKERQVFKLVPRTAVPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 961

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BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 9.040e-24
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            EI SL++  VY+LV    VP  +K + + W  K K DG+FK RLV QGW+Q P +D G T++PVCRLQSIRM+  I  + + E+  MDV TAF  AD+ E VFV
Sbjct:   72 EIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFV 175

[Close]

BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.850e-23
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            E++SL    VY+LV    VP  +K + + W  K K DGTFK R+V QGW+Q P +D G T++PVCR+QS+RM+  I  E +     MDV TAFL AD+ EEVFV
Sbjct:  152 EMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFV 255

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BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.680e-23
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            E++SL    VY+LV    VP  +K + + W  K K DGTFK R+V QGW+Q P +D G T++PVCR+QS+RM+  I  E +     MDV TAFL AD+ EEVFV
Sbjct: 1173 EMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFV 1276

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BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.680e-23
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            E++SL    VY+LV    VP  +K + + W  K K DGTFK R+V QGW+Q P +D G T++PVCR+QS+RM+  I  E +     MDV TAFL AD+ EEVFV
Sbjct: 1338 EMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFV 1441

[Close]

BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KXR0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.130e-23
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            E+ +L KH VY LV +  VP  +K++GT +  K K+DG FK+RLVV G  Q P  DYG +++PVCR+ SIRM  AI    ++ IY +DV  AFLNA  D +V+V
Sbjct:   16 EMDNLRKHNVYTLVPLSIVPKREKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNARCDRDVYV 119

[Close]

BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.850e-23
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            EI SL++  VY+LV    VP  +K + + W  K K  G+FK RLV QGW+Q P +D G T++PVCR QSIRM+  IA + + E+  MDV TAFL AD+ E VFV
Sbjct:  481 EIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 584

[Close]

BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KMR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 6.440e-23
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 0

Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 104
            E+ +L KH VY LV +  VP  +K++GT +G K K+DG FK+RLVV G  Q P  DYG +++PVCR+ SIRM  AI    ++ IY +DV  AFLNA  D +V+V
Sbjct:  325 EMDNLRKHNVYNLVPLSSVPKGEKILGTKFGFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYV 428

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot

BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L6R7_9PHAE	1.090e-26	54.81	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KWT4_9PHAE	2.050e-25	53.85	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JIN1_9PHAE	1.620e-24	52.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KPN4_9PHAE	9.040e-24	50.96	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JME8_9PHAE	1.850e-23	50.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KJH6_9PHAE	2.680e-23	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	2.680e-23	50.00	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KXR0_9PHAE	4.130e-23	49.04	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KL37_9PHAE	4.850e-23	50.96	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KMR4_9PHAE	6.440e-23	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 10..104 e-value: 4.5E-28 score: 98.5
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..104
None	No IPR available	PANTHER	PTHR11439:SF273		coord: 1..104

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig6047	contig	H-elongata_contig6047:4849..5160 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig6047.13588.1	mRNA_H-elongata_contig6047.13588.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig6047 4849..5160 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig6047.13588.1 ID=prot_H-elongata_contig6047.13588.1|Name=mRNA_H-elongata_contig6047.13588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWS
QAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDE
EVFV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like