mRNA_H-elongata_contig6047.13588.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6047.13588.1
Unique NamemRNA_H-elongata_contig6047.13588.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.090e-26
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            EI+SL+   VY+LV    VP    V+G+ W  K+K + T K+RLV +GW+Q P  D GGTF+PVCRLQSIRM+ AIAAE D ++  +DV+TAFL AD++E VFV
Sbjct:  324 EIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFV 427
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BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.050e-25
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            EI SL++  V++LV    VP  +K + + W  K K DG+FK RLVVQGW+Q P +DYG TF+PVCRLQSIRM+   A + + E+  MDV TAFL AD+ E VFV
Sbjct:   72 EIASLKERQVHKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFV 175
[Close]
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.620e-24
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            EI SL++  V++LV    VP  +K + + W  K KVDG+FK RLV QGW+Q P +D G T++PVCRLQSIRM+  IA + + E+  MDV TAFL AD+ E VFV
Sbjct:  858 EIASLKERQVFKLVPRTAVPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 961
[Close]
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 9.040e-24
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            EI SL++  VY+LV    VP  +K + + W  K K DG+FK RLV QGW+Q P +D G T++PVCRLQSIRM+  I  + + E+  MDV TAF  AD+ E VFV
Sbjct:   72 EIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFV 175
[Close]
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.850e-23
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            E++SL    VY+LV    VP  +K + + W  K K DGTFK R+V QGW+Q P +D G T++PVCR+QS+RM+  I  E +     MDV TAFL AD+ EEVFV
Sbjct:  152 EMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFV 255
[Close]
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.680e-23
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            E++SL    VY+LV    VP  +K + + W  K K DGTFK R+V QGW+Q P +D G T++PVCR+QS+RM+  I  E +     MDV TAFL AD+ EEVFV
Sbjct: 1173 EMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFV 1276
[Close]
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.680e-23
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            E++SL    VY+LV    VP  +K + + W  K K DGTFK R+V QGW+Q P +D G T++PVCR+QS+RM+  I  E +     MDV TAFL AD+ EEVFV
Sbjct: 1338 EMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFV 1441
[Close]
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KXR0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.130e-23
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            E+ +L KH VY LV +  VP  +K++GT +  K K+DG FK+RLVV G  Q P  DYG +++PVCR+ SIRM  AI    ++ IY +DV  AFLNA  D +V+V
Sbjct:   16 EMDNLRKHNVYTLVPLSIVPKREKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNARCDRDVYV 119
[Close]
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.850e-23
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            EI SL++  VY+LV    VP  +K + + W  K K  G+FK RLV QGW+Q P +D G T++PVCR QSIRM+  IA + + E+  MDV TAFL AD+ E VFV
Sbjct:  481 EIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 584
[Close]
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Match: A0A6H5KMR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 6.440e-23
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    1 EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWSQAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDEEVFV 312
            E+ +L KH VY LV +  VP  +K++GT +G K K+DG FK+RLVV G  Q P  DYG +++PVCR+ SIRM  AI    ++ IY +DV  AFLNA  D +V+V
Sbjct:  325 EMDNLRKHNVYNLVPLSSVPKGEKILGTKFGFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYV 428
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6047.13588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE1.090e-2654.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWT4_9PHAE2.050e-2553.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIN1_9PHAE1.620e-2452.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN4_9PHAE9.040e-2450.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE1.850e-2350.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE2.680e-2350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE2.680e-2350.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXR0_9PHAE4.130e-2349.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE4.850e-2350.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMR4_9PHAE6.440e-2350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6047contigH-elongata_contig6047:4849..5160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score90.5
Seed ortholog evalue5e-16
Seed eggNOG ortholog36914.XP_001527393.1
EggNOG free text desc.Transposable element
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,47E39@766764,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.9389994-CDS-H-elongata_contig6047:4848..51601622930978.9389994-CDS-H-elongata_contig6047:4848..5160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6047 4849..5160 -
1691679648.6726243-CDS-H-elongata_contig6047:4848..51601691679648.6726243-CDS-H-elongata_contig6047:4848..5160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6047 4849..5160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6047.13588.1prot_H-elongata_contig6047.13588.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6047 4849..5160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6047.13588.1

>prot_H-elongata_contig6047.13588.1 ID=prot_H-elongata_contig6047.13588.1|Name=mRNA_H-elongata_contig6047.13588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
EIQSLEKHGVYELVQMFFVPSSQKVVGTWWGNKIKVDGTFKSRLVVQGWS
QAPCVDYGGTFSPVCRLQSIRMMLAIAAELDYEIYMMDVQTAFLNADMDE
EVFV
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mRNA from alignment at H-elongata_contig6047:4849..5160-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6047.13588.1 ID=mRNA_H-elongata_contig6047.13588.1|Name=mRNA_H-elongata_contig6047.13588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig6047:4849..5160- (Himanthalia elongata Himel1 dioecious)
GAAATTCAAAGTCTGGAGAAGCACGGCGTCTACGAGCTAGTACAGATGTT
CTTTGTCCCTTCTTCTCAAAAGGTAGTCGGTACTTGGTGGGGAAACAAAA
TCAAGGTTGACGGTACATTTAAAAGCCGCCTGGTAGTGCAGGGATGGTCT
CAAGCCCCCTGTGTCGATTATGGGGGTACTTTCTCTCCCGTCTGTAGACT
GCAAAGCATTCGCATGATGCTGGCGATTGCGGCAGAGCTAGATTACGAAA
TTTACATGATGGATGTCCAAACGGCATTTCTCAACGCCGATATGGACGAG
GAAGTTTTCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig6047:4849..5160-

>mRNA_H-elongata_contig6047.13588.1 ID=mRNA_H-elongata_contig6047.13588.1|Name=mRNA_H-elongata_contig6047.13588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig6047:4849..5160- (Himanthalia elongata Himel1 dioecious)
GAAATTCAAAGTCTGGAGAAGCACGGCGTCTACGAGCTAGTACAGATGTT
CTTTGTCCCTTCTTCTCAAAAGGTAGTCGGTACTTGGTGGGGAAACAAAA
TCAAGGTTGACGGTACATTTAAAAGCCGCCTGGTAGTGCAGGGATGGTCT
CAAGCCCCCTGTGTCGATTATGGGGGTACTTTCTCTCCCGTCTGTAGACT
GCAAAGCATTCGCATGATGCTGGCGATTGCGGCAGAGCTAGATTACGAAA
TTTACATGATGGATGTCCAAACGGCATTTCTCAACGCCGATATGGACGAG
GAAGTTTTCGTCGAAATTCAAAGTCTGGAGAAGCACGGCGTCTACGAGCT
AGTACAGATGTTCTTTGTCCCTTCTTCTCAAAAGGTAGTCGGTACTTGGT
GGGGAAACAAAATCAAGGTTGACGGTACATTTAAAAGCCGCCTGGTAGTG
CAGGGATGGTCTCAAGCCCCCTGTGTCGATTATGGGGGTACTTTCTCTCC
CGTCTGTAGACTGCAAAGCATTCGCATGATGCTGGCGATTGCGGCAGAGC
TAGATTACGAAATTTACATGATGGATGTCCAAACGGCATTTCTCAACGCC
GATATGGACGAGGAAGTTTTCGTC
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