mRNA_H-elongata_contig60422.13584.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60422.13584.1
Unique NamemRNA_H-elongata_contig60422.13584.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60422.13584.1 vs. uniprot
Match: D8LM64_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM64_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 3.450e-71
Identity = 125/132 (94.70%), Postives = 130/132 (98.48%), Query Frame = 3 
Query:  327 AEIITQKGIGQMMTDITEREKKTLFAGSVPIGLNRNQEHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSSVVVDSEKAVVRSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDIYL 722
            AE +TQKGIG +MTD++EREKKTLFAGSVPIGLNRNQEHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSS+VVDSEKAVVRSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDIYL
Sbjct:  930 AETMTQKGIGALMTDMSEREKKTLFAGSVPIGLNRNQEHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSSIVVDSEKAVVRSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDIYL 1061
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BLAST of mRNA_H-elongata_contig60422.13584.1 vs. uniprot
Match: A0A6H5KEB5_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB5_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 9.810e-70
Identity = 125/159 (78.62%), Postives = 130/159 (81.76%), Query Frame = 3 
Query:  327 AEIITQKGIGQMMTDITEREKKTLFAGSVPIGLNRNQ--------------------------EHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSSVVVDSEKAVV-RSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDIYL 722
            AE +TQKGIG +MTD++EREKKTLFAGSVPIGLNRNQ                          EHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSS+VVDSEKAVV RSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDIYL
Sbjct:  145 AEKMTQKGIGALMTDMSEREKKTLFAGSVPIGLNRNQVVIGELNFNDNLYLLCTGIVRVQRVKEHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSSIVVDSEKAVVVRSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDIYL 303
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BLAST of mRNA_H-elongata_contig60422.13584.1 vs. uniprot
Match: A0A835YLB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB7_9STRA)

HSP 1 Score: 197 bits (500), Expect = 8.160e-55
Identity = 104/158 (65.82%), Postives = 121/158 (76.58%), Query Frame = 3 
Query:  327 AEIITQKGIGQMMTDITEREKKTLFAGSVPIGLNRNQ--------------------------EHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSSVVVDSEKAVVRSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDIYL 722
            AE +TQ+ I  +M D++EREKK LFAGSVPIGLNRNQ                          EH  N LDSG+AM+RVVFQEIHSG+IFGFDSFLTG+PAYSSVVVDSEK VVRSCTKDQI+ARLREDRKL+AKFY +AAVSIA+RL+E+SPLD++L
Sbjct:  612 AERLTQQSIEGLMADMSEREKKQLFAGSVPIGLNRNQVVIGEHNFNDNLFLLCTGIVRVQRVQEHAQNALDSGRAMNRVVFQEIHSGQIFGFDSFLTGAPAYSSVVVDSEKCVVRSCTKDQIMARLREDRKLSAKFYSVAAVSIAARLSELSPLDLFL 769
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BLAST of mRNA_H-elongata_contig60422.13584.1 vs. uniprot
Match: A0A7S3UPK2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPK2_HETAK)

HSP 1 Score: 137 bits (346), Expect = 1.120e-33
Identity = 69/145 (47.59%), Postives = 100/145 (68.97%), Query Frame = 3 
Query:  360 MMTDITEREKKTLFAGSVPIGLNRNQ--------------------------EHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSSVVVDSEKAVVRSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDI 716
            ++++++E++K+ LF G++PI + RNQ                          EHV     +G+A ++VVF EI++GE+FGFDSFLTG  + SS +VDSEKA++R CTK QI+ RL+ED++LA+KFYR+AAVS+A RLAEISPLD+
Sbjct:  508 VLSEMSEKDKRGLFMGTIPIAMQRNQVVIQEDMGNSTLYLLQAGVVRIQRLREHVGGETGTGRAAEKVVFHEINAGEMFGFDSFLTGESSSSSYLVDSEKAIIRCCTKQQIMERLKEDKRLASKFYRVAAVSLALRLAEISPLDV 652
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60422.13584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LM64_ECTSI3.450e-7194.70Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5KEB5_9PHAE9.810e-7078.62Cyclic nucleotide-binding domain-containing protei... [more]
A0A835YLB7_9STRA8.160e-5565.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UPK2_HETAK1.120e-3347.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60422contigH-elongata_contig60422:3..2341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-18_002630.1
Hectar predicted targeting categoryother localisation
Exons4
Model size725
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60422.13584.1prot_H-elongata_contig60422.13584.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60422 1245..2341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.4839222-UTR-H-elongata_contig60422:2..981622930978.4839222-UTR-H-elongata_contig60422:2..98Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60422 3..98 +
1691679648.5201592-UTR-H-elongata_contig60422:2..981691679648.5201592-UTR-H-elongata_contig60422:2..98Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60422 3..98 +
1622930978.5533483-UTR-H-elongata_contig60422:694..9241622930978.5533483-UTR-H-elongata_contig60422:694..924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60422 695..924 +
1691679648.5298257-UTR-H-elongata_contig60422:694..9241691679648.5298257-UTR-H-elongata_contig60422:694..924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60422 695..924 +
1622930978.5745645-UTR-H-elongata_contig60422:1211..12441622930978.5745645-UTR-H-elongata_contig60422:1211..1244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60422 1212..1244 +
1691679648.538603-UTR-H-elongata_contig60422:1211..12441691679648.538603-UTR-H-elongata_contig60422:1211..1244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60422 1212..1244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.591587-CDS-H-elongata_contig60422:1244..13221622930978.591587-CDS-H-elongata_contig60422:1244..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60422 1245..1322 +
1691679648.5533419-CDS-H-elongata_contig60422:1244..13221691679648.5533419-CDS-H-elongata_contig60422:1244..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60422 1245..1322 +
1622930978.611122-CDS-H-elongata_contig60422:2053..23411622930978.611122-CDS-H-elongata_contig60422:2053..2341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60422 2054..2341 +
1691679648.564059-CDS-H-elongata_contig60422:2053..23411691679648.564059-CDS-H-elongata_contig60422:2053..2341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60422 2054..2341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60422.13584.1

>prot_H-elongata_contig60422.13584.1 ID=prot_H-elongata_contig60422.13584.1|Name=mRNA_H-elongata_contig60422.13584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MMTDITEREKKTLFAGSVPIGLNRNQEHVSNVLDSGKAMDRVVFQEIHSG
EIFGFDSFLTGSPAYSSVVVDSEKAVVRSCTKDQIVARLREDRKLAAKFY
RIAAVSIASRLAEISPLDIYL*
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mRNA from alignment at H-elongata_contig60422:3..2341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60422.13584.1 ID=mRNA_H-elongata_contig60422.13584.1|Name=mRNA_H-elongata_contig60422.13584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2339bp|location=Sequence derived from alignment at H-elongata_contig60422:3..2341+ (Himanthalia elongata Himel1 dioecious)
CGACAGTTCCGAGACGTGATGAGGCACGACGAGGTCATTACCATCAAGAG
GCACACCAACTCCAACAAGGCCCTTGTCTTCACTGACATCAGCCAGGTTA
GGGTTGGGTTTAGGTTGGAGTTAGGAACAGGGAGCGCACAGCCCGCATAA
TCGTCTTGAGTTTATTATTATTATTATTATTATTTTTAATTATTATTATT
TTATTTTAATTATTATTATTTTATTTTATTTTGGGGGACGTGATATTGTT
TTGATTACAGTAGTATTAATATTTATTTAATGAGAACAAACTATTGAGCG
TGGTCCCTAAACGAATTTTGCTATTTGTAGGACATCTTTTTCGTGCAAGA
TAAACTGGAAAATAAGACGATATTTCATATTTCAGACGATTACAAAATAA
ATCAAAACTGGAAAGAAACGCGCGCATTCACCTTCTCTGTCATTTTGGAA
TATTGTACAGTATTCGTTTTTTCGGGGTGTGGTTTTAGCCTTTCTCATTT
TTTTCGAAAGTATTTATTCTTGAACCAGCTAAAAAATAATGTGCAAGTTC
TGAAGTTTCGATATTATTTTTATTTATAGAAGACTTTCTGTATTGGAATT
GTGTGTGTGTAAGGTACCCGTATGGAAATTATTTTTGAACTGTGGATGGT
GTGGTGTGCGGTACCCGTATGTTTTTCTGTTTGTTTGATCAGGGCCGCAA
GATGCTGGAGGTAAAATCGGAGTCGGAGAGGGAGCGCGTCTTCGTTGAGT
GCAGCACCCGGTGGAAGAGCGAGGACGAGGTTACCTCCCGCGAGATGCGC
AAGATGCTGCGCCGCAAGATGACCCGGCTCAGCCTGGCTCACCTCAACCA
GGCGAGCATGCCGAACAGCTAACGCCGAATATATATATATATATATATAC
ACATATTTATATTTATAGCATCGTCTTAAAAATAGGTCGCGCTCTTCGTT
CCGGCCATGCTCTCCTCGCACCGTACCCATAAGCCATCCCCTATTCCCGT
ATCGGGTGCAGCACGCTCGCCTCCTTAATATCACGTTCTTCTCTCTGTCT
CCCTCGCTTATACGTCTTTCCAAGGACGCGTGGTCATATTTGTCTATGAC
TTGAGCTCGACCCCTTCCCCAAAGTGTTCCCTTTCTTGGTACGCCTTTCT
TTTGTGTGATTTCGTTCTCGTTTTCGTTCTCGTGATATATGTTTTTGGAC
AATGCCCAGGCGGAGATTATAACCCAGAAGGGTATTGGGCAGATGATGAC
GGATATCACCGAGCGAGAGAAAAAGACGCTTTTTGCCGGCAGCGTGCCCA
TCGGGCTCAATCGAAACCAGGTCGTGATCGGCGAGCTTAACTTCAACGAC
AACCTCTATCTGCTTTGCACGGGCATCGTCCGCGTGCAGCGCGTGAAGGC
AAGATGCGGGGTTTGTTGGTTGAGGGCGCCGCCTAGTTGCCTGCCGATCT
TGCCCTTGTGACTTTAGTTCACTTTTTGACCTTGTGTCTCTTGTGTGCCT
GTCTATGACATATAGTGTTTGTCTATGGTATTTAGTGTTTGTCTATGGTA
TTTAGTGTTTGTCTATGGCATATAGTGTTTGTCTCTCTTGTGTCAGTGTT
TCTTTTTAACGTCGAAATTGTTACTATTTTTTGTTTTTGTTTTTTTCCCC
ACCTTTTTTGCTGTACAGTAGAAGTGTTTTGATATATCTTCGTCTAATAA
TATAATATTGATGTATATATAGATATTATATGTATATTGATGTATATAGA
TACTATATAATATGATGCACGACGTGGATCCTTAAGGATGCGGGTGAGTC
GTTTCTTGAAGAGACGTTAAAGTCGAGACTCGAGAGCCCTTCTCTCTAGA
ACATTTTTTTAACTTTACAAAATTAAAAAATACGCCCAACTTTTTTGGAC
CCCCCCCCCCCCCCCCCCCCCCCCACCAAAACAAACAAACGGTGGGGAGA
GGAGAGCGGGGGCCCACTACCNNNNNNNNNNACGCCCAACTTTTTTGGCC
CCCCCCCCCCTCCCCCTTCCAACTCGAAAACACACGGATGGGTGGTGACA
GGAGCACGTGTCCAACGTCCTGGACAGTGGCAAGGCGATGGACCGCGTCG
TCTTCCAAGAAATCCACTCGGGCGAAATCTTCGGGTTCGACTCCTTCCTC
ACCGGCTCTCCGGCGTACAGCTCGGTCGTCGTGGACTCTGAAAAGGCCGT
CGTTCGGTCGTGCACAAAGGACCAGATCGTGGCGAGGTTGCGCGAGGACC
GCAAGTTGGCCGCGAAGTTTTACCGTATAGCGGCGGTCAGCATAGCCTCG
CGGCTTGCGGAGATCTCACCGCTTGACATCTACCTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig60422:3..2341+

>mRNA_H-elongata_contig60422.13584.1 ID=mRNA_H-elongata_contig60422.13584.1|Name=mRNA_H-elongata_contig60422.13584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig60422:3..2341+ (Himanthalia elongata Himel1 dioecious)
ATGATGACGGATATCACCGAGCGAGAGAAAAAGACGCTTTTTGCCGGCAG
CGTGCCCATCGGGCTCAATCGAAACCAGATGATGACGGATATCACCGAGC
GAGAGAAAAAGACGCTTTTTGCCGGCAGCGTGCCCATCGGGCTCAATCGA
AACCAGGAGCACGTGTCCAACGTCCTGGACAGTGGCAAGGCGATGGACCG
CGTCGTCTTCCAAGAAATCCACTCGGGCGAAATCTTCGGGTTCGACTCCT
TCCTCACCGGCTCTCCGGCGTACAGCTCGGTCGTCGTGGACTCTGAAAAG
GCCGTCGTTCGGTCGTGCACAAAGGACCAGATCGTGGCGAGGTTGCGCGA
GGACCGCAAGTTGGCCGCGAAGTTTTACCGTATAGCGGCGGTCAGCATAG
CCTCGCGGCTTGCGGAGATCTCACCGCTTGACATCTACCTGTAGGAGCAC
GTGTCCAACGTCCTGGACAGTGGCAAGGCGATGGACCGCGTCGTCTTCCA
AGAAATCCACTCGGGCGAAATCTTCGGGTTCGACTCCTTCCTCACCGGCT
CTCCGGCGTACAGCTCGGTCGTCGTGGACTCTGAAAAGGCCGTCGTTCGG
TCGTGCACAAAGGACCAGATCGTGGCGAGGTTGCGCGAGGACCGCAAGTT
GGCCGCGAAGTTTTACCGTATAGCGGCGGTCAGCATAGCCTCGCGGCTTG
CGGAGATCTCACCGCTTGACATCTACCTGTAG
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