mRNA_H-elongata_contig60417.13583.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60417.13583.1
Unique NamemRNA_H-elongata_contig60417.13583.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: A0A6H5KHQ5_9PHAE (FAD-binding PCMH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ5_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.660e-46
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 VSGLMEWAGREGVCLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKRGR 330
            VS LMEWAG EGVCLIPFGGGT+VTRALE+P LDVEPRP+       M  VL VD+ NGTAH++AG VGR L+ ELA RGVT+GHEPDS+EFSTLGGWVATRASGMKRGR
Sbjct: 1662 VSRLMEWAGAEGVCLIPFGGGTNVTRALEVPPLDVEPRPV-------MDRVLDVDVANGTAHIQAGVVGRKLAAELAERGVTMGHEPDSLEFSTLGGWVATRASGMKRGR 1764
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: D7FUE9_ECTSI (Alkylglycerone-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE9_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.070e-45
Identity = 84/110 (76.36%), Postives = 90/110 (81.82%), Query Frame = 1 
Query:    1 VSGLMEWAGREGVCLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKRGR 330
            VS LMEWAG EGVCLIPFGGGTSVTRALE+P LDVEPRP+       M  VL VD  NGTAH++AG VGR L+ ELA RGVT GHEPDS+EFSTLGGWVATRASGMKRGR
Sbjct: 2042 VSRLMEWAGAEGVCLIPFGGGTSVTRALEVPPLDVEPRPV-------MDRVLDVDDANGTAHIQAGVVGRKLAAELAERGVTTGHEPDSLEFSTLGGWVATRASGMKRGR 2144
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: A0A7S2PPS2_9STRA (Alkylglycerone-phosphate synthase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PPS2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.180e-36
Identity = 66/110 (60.00%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    1 VSGLMEWAGREGVCLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKRGR 330
            VS L+  A  E  CLIPFGGGT+V+ A   P  + EPRPI+SVDM+++C VL V+  +G AHVEAG  G  L+ +L + GVT+GHEPDS+EFSTLGGW+AT+ASGMKR R
Sbjct:  190 VSQLVALAAAENWCLIPFGGGTNVSHATWCPPKEKEPRPIISVDMKRLCRVLWVNKEDGLAHVEAGITGGELASQLEKFGVTMGHEPDSIEFSTLGGWIATKASGMKRSR 299
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: B5Y5M7_PHATC (Alkylglycerone-phosphate synthase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y5M7_PHATC)

HSP 1 Score: 134 bits (337), Expect = 1.100e-34
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:   40 CLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKRGR 330
            C+IPFGGGT+V++A   P + VEPRPI+SVDM +M  +L V   NG AHVEAG  GR L EE+ RRG T+GHEPDS EFSTLGGW+AT+ASGMKR +
Sbjct:  117 CVIPFGGGTNVSQATRCPPIQVEPRPIISVDMTQMNRILWVSEENGLAHVEAGITGRALVEEMNRRGFTIGHEPDSYEFSTLGGWIATKASGMKRNK 213
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: A0A1Z5JHW7_FISSO (Alkylglycerone-phosphate synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHW7_FISSO)

HSP 1 Score: 134 bits (338), Expect = 2.260e-34
Identity = 62/105 (59.05%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:   10 LMEWAGREGVCLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKR 324
            L+  A  +  CLIPFGGGT+V++A + P++DV+PRPI+SVDM +M ++L+VD  N  AHVE G  GR L +E+ R G T+GH+PDS EFSTLGGW+AT+ASGMKR
Sbjct: 1770 LIRMAQSQNWCLIPFGGGTNVSQATKCPSIDVDPRPIISVDMTEMRKILAVDEENEVAHVECGITGRELVQEMKRFGYTIGHQPDSYEFSTLGGWIATKASGMKR 1874
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: A0A4Q3JUW0_9DELT (Alkylglycerone-phosphate synthase (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q3JUW0_9DELT)

HSP 1 Score: 133 bits (334), Expect = 5.860e-34
Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 1 
Query:   10 LMEWAGREGVCLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKRGR 330
            L+E A   GVCL+PFGGGT+VT AL LP LD E R +++ D+R+M ++L VD  N TA +EAGA GRH++ ELAR G+T+GHEPDS EFSTLGGWVAT ASGMK+ R
Sbjct:  179 LVETARERGVCLVPFGGGTNVTDALRLP-LD-EQRLVIAADVRRMNKILWVDPVNRTACIEAGATGRHIATELARHGMTMGHEPDSAEFSTLGGWVATNASGMKKNR 283
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: A0A1Z5JB54_FISSO (Alkylglycerone-phosphate synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JB54_FISSO)

HSP 1 Score: 133 bits (334), Expect = 7.830e-34
Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:   10 LMEWAGREGVCLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKRGR 330
            L+  A     CLIPFGGGTSV++A + P+++V+PRPI+SVDM +M  VL+VD  N  AHVE G  G+ L +E+ R G T+GH+PDS EFSTLGGW+AT+ASGMKR +
Sbjct: 1769 LIRMARSRNWCLIPFGGGTSVSQATKCPSIEVDPRPIISVDMTEMRRVLAVDEENEVAHVECGITGKELVQEMKRLGYTIGHQPDSYEFSTLGGWIATKASGMKRNK 1875
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: A0A2N1L5H9_TRIHA (Alkylglycerone-phosphate synthase n=2 Tax=Trichoderma harzianum TaxID=5544 RepID=A0A2N1L5H9_TRIHA)

HSP 1 Score: 129 bits (323), Expect = 1.080e-33
Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 VSGLMEWAGREGVCLIPFGGGTSVTRALELPT-LDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKRGR 330
            V G++E A ++GVCLIP+GGGT+V+ AL  P+  D E R IVSVD R+M ++L +D  N  A +EAGAVG ++ E LA RG T+GHEPDS EFSTLGGW+AT ASGMK+ R
Sbjct:  201 VIGIVEAARQKGVCLIPYGGGTNVSAALRCPSNQDGENRMIVSVDTRRMDKILWIDPVNRLAQIEAGAVGSNIMEALAERGFTMGHEPDSCEFSTLGGWIATNASGMKKNR 311
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: A0A448ZP76_9STRA (Alkylglycerone-phosphate synthase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZP76_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.720e-33
Identity = 64/110 (58.18%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    1 VSGLMEWAGREGVCLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKRGR 330
            V  +++ A R+G CLIP+GGGT+V  A   P  D EPRPIV+V  +++  VL ++  +G AHVEAG  GR L E LARRG T+GHEPDS+EFSTLGGW+AT+ASGMKR +
Sbjct: 2112 VLAIVDAARRKGWCLIPYGGGTNVIEATRCPPRDTEPRPIVTVSTKRLNRVLWLNEEDGLAHVEAGITGRDLVEILARRGYTMGHEPDSIEFSTLGGWIATKASGMKRSK 2221
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BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Match: A0A150PM43_SORCE (Alkylglycerone-phosphate synthase (Fragment) n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PM43_SORCE)

HSP 1 Score: 130 bits (327), Expect = 3.720e-33
Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    1 VSGLMEWAGREGVCLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSVDIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRASGMKRGR 330
            V  L+E A   G CL+PFGGGT+VT AL LP    E R +V++DMR+M ++  VD  N TA +EAGA GRH++ ELAR G+TLGHEPDS EFSTLGGW+AT ASGMK+ R
Sbjct:  138 VERLVEVAHARGACLVPFGGGTNVTDALRLPV--DEARVVVALDMRRMNKLRWVDPVNRTACIEAGATGRHIAAELARHGLTLGHEPDSAEFSTLGGWIATNASGMKKNR 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60417.13583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHQ5_9PHAE1.660e-4675.45FAD-binding PCMH-type domain-containing protein n=... [more]
D7FUE9_ECTSI1.070e-4576.36Alkylglycerone-phosphate synthase n=1 Tax=Ectocarp... [more]
A0A7S2PPS2_9STRA1.180e-3660.00Alkylglycerone-phosphate synthase (Fragment) n=1 T... [more]
B5Y5M7_PHATC1.100e-3464.95Alkylglycerone-phosphate synthase n=1 Tax=Phaeodac... [more]
A0A1Z5JHW7_FISSO2.260e-3459.05Alkylglycerone-phosphate synthase n=1 Tax=Fistulif... [more]
A0A4Q3JUW0_9DELT5.860e-3463.55Alkylglycerone-phosphate synthase (Fragment) n=1 T... [more]
A0A1Z5JB54_FISSO7.830e-3457.94Alkylglycerone-phosphate synthase n=1 Tax=Fistulif... [more]
A0A2N1L5H9_TRIHA1.080e-3359.46Alkylglycerone-phosphate synthase n=2 Tax=Trichode... [more]
A0A448ZP76_9STRA2.720e-3358.18Alkylglycerone-phosphate synthase n=1 Tax=Pseudo-n... [more]
A0A150PM43_SORCE3.720e-3360.91Alkylglycerone-phosphate synthase (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60417contigH-elongata_contig60417:310..982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue6.2e-38
Seed eggNOG ortholog2880.D7FUE9
Preferred nameAGPS
KEGG rclassRC00004,RC00020,RC02886
KEGG koko:K00803,ko:K13356
KEGG ReactionR04311,R09470
KEGG Pathwayko00073,ko00565,ko01100,ko04146,ko04212,map00073,map00565,map01100,map04146,map04212
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006605,GO:0006625,GO:0006629,GO:0006662,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008609,GO:0008610,GO:0008611,GO:0009058,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016740,GO:0016765,GO:0018904,GO:0031090,GO:0031903,GO:0031907,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042579,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043574,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046485,GO:0046504,GO:0046907,GO:0048037,GO:0050660,GO:0050662,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071949,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097384,GO:0098588,GO:0098805,GO:1901265,GO:1901363,GO:1901503,GO:1901576
EggNOG free text desc.alkylglycerone-phosphate synthase activity
EggNOG OGsCOG0277@1,COG3320@1,KOG1221@2759,KOG1233@2759
EC1.2.1.84,2.5.1.26
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60417.13583.1prot_H-elongata_contig60417.13583.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60417 310..970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.4113483-CDS-H-elongata_contig60417:309..5011622930978.4113483-CDS-H-elongata_contig60417:309..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60417 310..501 -
1691679648.483488-CDS-H-elongata_contig60417:309..5011691679648.483488-CDS-H-elongata_contig60417:309..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60417 310..501 -
1622930978.4245293-CDS-H-elongata_contig60417:841..9701622930978.4245293-CDS-H-elongata_contig60417:841..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60417 842..970 -
1691679648.5011787-CDS-H-elongata_contig60417:841..9701691679648.5011787-CDS-H-elongata_contig60417:841..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60417 842..970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.4385903-UTR-H-elongata_contig60417:970..9821622930978.4385903-UTR-H-elongata_contig60417:970..982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60417 971..982 -
1691679648.5108044-UTR-H-elongata_contig60417:970..9821691679648.5108044-UTR-H-elongata_contig60417:970..982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60417 971..982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60417.13583.1

>prot_H-elongata_contig60417.13583.1 ID=prot_H-elongata_contig60417.13583.1|Name=mRNA_H-elongata_contig60417.13583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MEWAGREGVCLIPFGGGTSVTRALELPTLDVEPRPIVSVDMRKMCEVLSV
DIGNGTAHVEAGAVGRHLSEELARRGVTLGHEPDSMEFSTLGGWVATRAS
GMKRGR*
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mRNA from alignment at H-elongata_contig60417:310..982-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60417.13583.1 ID=mRNA_H-elongata_contig60417.13583.1|Name=mRNA_H-elongata_contig60417.13583.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at H-elongata_contig60417:310..982- (Himanthalia elongata Himel1 dioecious)
GTCTCTGGGTTGATGGAGTGGGCGGGGCGCGAAGGCGTCTGCTTAATACC
ATTCGGTGGAGGCACCTCCGTCACGCGCGCCCTCGAGCTGCCTACCCTGG
ATGTGGAACCTCGTCCGATCGTCAGCGTCGACATGCGCAAGGTGATCGAT
AGATGATAGATCGCTATGTCCTATTAATTGTTAATGATTGTCGCTGTGGC
TGTGGCTGTGGGCGCGATTCTTTTATTGGTTGAATTATCCTACAAGCTGA
TATCAAAGTAGGAAACGTACGACGTGCTCTCCATGCAAAAAAGTAACGGC
AATGGTGCAATGACGATTTTGTGCTCAAAGGTAGTCATTCGAACTTGACA
ATAGTTGGGTCCCCTGGGGGCTGCACCTGTCACGGTGCTAAGAAGGCGTG
GATGTTCGGAGGGTTGGAATGAGTTATATGTTTTTGAAGAAAAAAACGGA
TGTGTTTGGCGTGGACATCGGCACGGTGCAGATGTGTGAGGTGTTAAGCG
TGGACATCGGCAATGGGACGGCGCACGTGGAAGCAGGGGCCGTGGGTAGA
CATCTCTCCGAGGAGCTCGCAAGGCGGGGCGTGACTCTCGGGCACGAGCC
GGACAGCATGGAGTTCTCCACCCTGGGAGGCTGGGTGGCAACCCGGGCGT
CGGGGATGAAGCGTGGTCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig60417:310..982-

>mRNA_H-elongata_contig60417.13583.1 ID=mRNA_H-elongata_contig60417.13583.1|Name=mRNA_H-elongata_contig60417.13583.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig60417:310..982- (Himanthalia elongata Himel1 dioecious)
ATGGAGTGGGCGGGGCGCGAAGGCGTCTGCTTAATACCATTCGGTGGAGG
CACCTCCGTCACGCGCGCCCTCGAGCTGCCTACCCTGGATGTGGAACCTC
GTCCGATCGTCAGCGTCGACATGCGCAAGATGGAGTGGGCGGGGCGCGAA
GGCGTCTGCTTAATACCATTCGGTGGAGGCACCTCCGTCACGCGCGCCCT
CGAGCTGCCTACCCTGGATGTGGAACCTCGTCCGATCGTCAGCGTCGACA
TGCGCAAGATGTGTGAGGTGTTAAGCGTGGACATCGGCAATGGGACGGCG
CACGTGGAAGCAGGGGCCGTGGGTAGACATCTCTCCGAGGAGCTCGCAAG
GCGGGGCGTGACTCTCGGGCACGAGCCGGACAGCATGGAGTTCTCCACCC
TGGGAGGCTGGGTGGCAACCCGGGCGTCGGGGATGAAGCGTGGTCGGTGA
ATGTGTGAGGTGTTAAGCGTGGACATCGGCAATGGGACGGCGCACGTGGA
AGCAGGGGCCGTGGGTAGACATCTCTCCGAGGAGCTCGCAAGGCGGGGCG
TGACTCTCGGGCACGAGCCGGACAGCATGGAGTTCTCCACCCTGGGAGGC
TGGGTGGCAACCCGGGCGTCGGGGATGAAGCGTGGTCGGTGA
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