prot_H-elongata_contig60415.13582.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60415.13582.1
Unique Nameprot_H-elongata_contig60415.13582.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: D8LE19_ECTSI (Rab28, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE19_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 2.170e-70
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0 
Query:    4 QVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNKCE 121
            +VILLGDGTVGKTSIATRFA+ DFSQ YKQTIGLDFFVKRI+LPGDV VT QIWDIGGQSIGSKMMSKYIFGAH V+MCYDITNYDSFQ+LDDWYRLVVKTF  G MPYVA+VGNKC+
Sbjct:   30 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRILLPGDVQVTMQIWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQDLDDWYRLVVKTFEKGVMPYVAMVGNKCD 147
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: A0A6H5JPJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ9_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.640e-67
Identity = 104/127 (81.89%), Postives = 111/127 (87.40%), Query Frame = 0 
Query:    4 QVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHV---------VVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNKCE 121
            +VILLGDGTVGKTSIATRFA+ DFSQ YKQTIGLDFFVKRI+LPGDV VT Q+WDIGGQSIGSKMMSKYIFGAHV         V+MCYDITNYDSFQNLDDWYRLVVKTF  G MPYVA+VGNKC+
Sbjct:  101 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRILLPGDVQVTMQVWDIGGQSIGSKMMSKYIFGAHVRSGGTGLIAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCD 227
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: A0A7S2XY86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY86_9STRA)

HSP 1 Score: 189 bits (479), Expect = 7.040e-59
Identity = 84/118 (71.19%), Postives = 101/118 (85.59%), Query Frame = 0 
Query:    4 QVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNKCE 121
            +VI+LGDG VGKTSIA RF  + FS++YKQTIGLDFF+K+++LPGDVHV  QIWDIGGQS+GSKM+  YIFGAH V++CYDITNYDSFQNL+DWYRLV +TFA   MPYV +V NK +
Sbjct:   26 KVIILGDGAVGKTSIAMRFTDNSFSKAYKQTIGLDFFIKKLILPGDVHVALQIWDIGGQSMGSKMIHNYIFGAHAVLLCYDITNYDSFQNLEDWYRLVRRTFARDTMPYVGLVANKSD 143
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: A0A7S1CBI3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBI3_9STRA)

HSP 1 Score: 187 bits (476), Expect = 8.850e-58
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0 
Query:    4 QVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNKCE 121
            +VILLGDG VGKTSIA RF  D FS+ YKQTIGLDFF+KR+VLPGD+HV  QIWDIGGQSIG KM+  YI+GA  V++CYD+TNY SFQNL+DWYRLV +T A+ AMPYVA+VGNK +
Sbjct:   25 KVILLGDGAVGKTSIAARFTNDYFSKMYKQTIGLDFFIKRLVLPGDIHVALQIWDIGGQSIGGKMIKNYIYGAQAVLLCYDVTNYASFQNLEDWYRLVQQTHAADAMPYVALVGNKTD 142
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: A0A7S0HTS2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HTS2_9EUKA)

HSP 1 Score: 183 bits (464), Expect = 4.580e-56
Identity = 81/118 (68.64%), Postives = 99/118 (83.90%), Query Frame = 0 
Query:    4 QVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNKCE 121
            +VILLGDG VGKTSIA RF  D F+++YKQTIG+DFF+KR+VLPG+VHV  QIWDIGGQ+IG KM+  YI+GA  V++CYDITNY SFQNL+DW+RLV +TF   AMPYV +VGNK +
Sbjct:   26 KVILLGDGAVGKTSIAMRFTEDHFAKAYKQTIGVDFFIKRLVLPGEVHVALQIWDIGGQTIGGKMIGNYIYGAQAVLLCYDITNYQSFQNLEDWFRLVRRTFQGSAMPYVTLVGNKTD 143
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: A0A7S0P625_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P625_9EUKA)

HSP 1 Score: 183 bits (465), Expect = 5.210e-56
Identity = 81/118 (68.64%), Postives = 101/118 (85.59%), Query Frame = 0 
Query:    4 QVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNKCE 121
            +VILLGDG VGKTSIA RF  D F+++YKQTIGLDFF+KR+VLPGDV+V  QIWDIGGQ+IG KM+S YI+GA  V++CYDITNY++FQNL+DW+RLV +TF+ G MPYV + GNK +
Sbjct:   37 KVILLGDGAVGKTSIAMRFTEDHFAKTYKQTIGLDFFIKRLVLPGDVNVALQIWDIGGQTIGGKMISNYIYGAQAVLLCYDITNYETFQNLEDWFRLVRRTFSQGNMPYVVLAGNKTD 154
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: A0A813DPM1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DPM1_POLGL)

HSP 1 Score: 180 bits (457), Expect = 5.270e-55
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 0 
Query:    4 QVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNK 119
            +VILLGDG VGKTS+ATRF  D F++ YKQTIGLDFFVKR+VLPGDVHV  QIWDIGGQSIG KM+S YI G++ VV+CYDITNY+SFQ+L+DW  LV +TF    +PYVA++GNK
Sbjct:   25 KVILLGDGAVGKTSLATRFCEDHFAKQYKQTIGLDFFVKRVVLPGDVHVCLQIWDIGGQSIGGKMVSNYIHGSNAVVLCYDITNYESFQHLEDWLFLVKRTFGESPLPYVALMGNK 140
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: A0A7S1ABN2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ABN2_NOCSC)

HSP 1 Score: 180 bits (456), Expect = 7.040e-55
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 0 
Query:    4 QVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNK 119
            ++ILLGDG VGKTS+A RF  D F++ YKQTIGLDFF+KRIVLPGDVHV  QIWDIGGQSIG KM+S YI G+H V++CYDITNY SFQ+L+DW  LV +TF SG+MPY+A++ NK
Sbjct:   23 KIILLGDGAVGKTSLAMRFCEDYFAKQYKQTIGLDFFIKRIVLPGDVHVCLQIWDIGGQSIGGKMISNYIHGSHAVILCYDITNYQSFQHLEDWLFLVKRTFDSGSMPYMALMANK 138
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: A0A7S0LHF5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHF5_9EUKA)

HSP 1 Score: 178 bits (452), Expect = 4.440e-54
Identity = 76/118 (64.41%), Postives = 98/118 (83.05%), Query Frame = 0 
Query:    4 QVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNKCE 121
            +VILLGDG VGKTS+A RF  D F+++YKQTIGLDFF+KR++LPG V++  QIWDIGGQ+IG KM+  YI+GA  V++CYDITNY +FQNL+DWYRLV +TF  G MP+V ++GNK +
Sbjct:   37 KVILLGDGAVGKTSVAMRFTEDHFAKTYKQTIGLDFFIKRLILPGGVNIALQIWDIGGQTIGGKMIQNYIYGAQAVLLCYDITNYQTFQNLEDWYRLVRRTFTQGTMPHVVLIGNKTD 154
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BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Match: K3WA31_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA31_GLOUD)

HSP 1 Score: 177 bits (449), Expect = 6.370e-54
Identity = 84/126 (66.67%), Postives = 97/126 (76.98%), Query Frame = 0 
Query:    2 PQQ----VILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDVHVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRLVVKTFASGAMPYVAIVGNKCETV 123
            PQQ    VI+LGDG VGKTSIA R   D+FS  YKQTIGLDFF+KR+ LPGD  VT QIWDIGGQSIG KM+  YIFGA  V++ YD+TNY+SFQNL+DWYRLV +TF    MPYV +VGNK + V
Sbjct:   11 PQQLQYKVIILGDGAVGKTSIAIRHTEDNFSNVYKQTIGLDFFLKRLALPGDTQVTLQIWDIGGQSIGGKMLKNYIFGAQAVLLVYDVTNYESFQNLEDWYRLVRRTFDDDRMPYVGLVGNKTDLV 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60415.13582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE19_ECTSI2.170e-7087.29Rab28, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A6H5JPJ9_9PHAE1.640e-6781.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XY86_9STRA7.040e-5971.19Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1CBI3_9STRA8.850e-5872.03Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0HTS2_9EUKA4.580e-5668.64Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S0P625_9EUKA5.210e-5668.64Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A813DPM1_POLGL5.270e-5570.69Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S1ABN2_NOCSC7.040e-5569.83Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S0LHF5_9EUKA4.440e-5464.41Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
K3WA31_GLOUD6.370e-5466.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 26..42
score: 32.76
coord: 109..122
score: 28.89
coord: 45..67
score: 27.28
coord: 3..24
score: 36.46
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 5..122
e-value: 0.002
score: -56.0
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 3..118
e-value: 5.3E-9
score: 2.7
NoneNo IPR availableGENE3D3.40.50.300coord: 3..123
e-value: 6.6E-35
score: 122.1
NoneNo IPR availablePANTHERPTHR24073:SF572RAS-RELATED PROTEIN RAB-28coord: 7..121
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 7..121
NoneNo IPR availablePROSITEPS51419RABcoord: 1..123
score: 15.386
IPR001806Small GTPasePFAMPF00071Rascoord: 5..121
e-value: 1.8E-30
score: 105.7
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 4..121
e-value: 8.2E-15
score: 52.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60415contigH-elongata_contig60415:889..2061 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60415.13582.1mRNA_H-elongata_contig60415.13582.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60415 889..2061 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60415.13582.1 ID=prot_H-elongata_contig60415.13582.1|Name=mRNA_H-elongata_contig60415.13582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
RPQQVILLGDGTVGKTSIATRFARDDFSQSYKQTIGLDFFVKRIVLPGDV
HVTFQIWDIGGQSIGSKMMSKYIFGAHVVVMCYDITNYDSFQNLDDWYRL
VVKTFASGAMPYVAIVGNKCETV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase