mRNA_H-elongata_contig11731.1358.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11731.1358.1
Unique NamemRNA_H-elongata_contig11731.1358.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: D7FZM4_ECTSI (CRAL-TRIO domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FZM4_ECTSI)

HSP 1 Score: 592 bits (1526), Expect = 1.920e-189
Identity = 445/1029 (43.25%), Postives = 550/1029 (53.45%), Query Frame = 3 
Query:   69 LTGPCPPSSSCERCDKLPRRRNVSEIRFTEAVDPVAGSGDDGSGSTMAA-LRRADSWWHVGLVLGPLIGGLLYGRNLGWRWLGGGVDPEKA-----------DNPALVACAGACLCVLIVA--AWRSTTFRESVGALLRYCVGICYRDIGVASRSRRSTGKVGGRATRRGPRGVRRSRRISDADFLSLAGVREEVED--DDSEETPLI--GNISAHSLSSAAGSPGRMAEGADLEAGTGAGAVDDDPVPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTVLDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWAMMSNVMLRGSRDKPRVLGANYLPTLMELVDASQIPPEYGGRNSDPLGFSPEEDAFRKGLVTASLEEPT-PSPVDHSPPLTTVARDGADGASAGAHVDVGSGDRPVADALARQHQRGV--REGPVDGGSAPA---------------REGT-GAATIYVRAPRKSSFVSSTTDAA--------------SGSKGDPPPE-------------GMTQRLASAVRQSMRGGATRAFLGVENKFRYDTARRLWVMDGDERSGGGXXXXXXXXXXXXXXXXXXEEAGEDYAGDAGESGERDGSENSLIRAIQAAQQARGGKLPVPST-----LNARSYRDAARTWRVDGPSPGSMIGLGVSSAAVVLLALQMAWSALDSALEVLSLLWVLVPVVYGGLGFSALGAGCVVSIATATVAIPGRLAPAALVRVTTRSPVRALRVATIMQIATTILLSGVTGSSWLTSPHKSRGGASFAAAVFAYTVMRLPN-VVARPSLTSLLAVAFGTGPSGGGNIARRRT------ALKVVAVGISQAIGGLAAGAVFAAAVRARAETGVICFRLAAVAFVGVYLATLFVDATEGAGGYSAVWR-----GACGAWLATCDFVEEAMA 2912
            ++ PCP SSSCERC   P  R+ SEI          G     S ST+AA LRRADS WH+GLVLG LIGGL YGR       GGG     A           D PA VACA AC  VL VA  AWR T    + GA+    V  C R  G  S        V GR  R G  G               AG +E   +  D  EE PL+  G++ A   SS+A  PG   E  D+EAG G GA  D PV +RYL A  G+   A+ MW  TVKWR +T  +  L  P P L +I+ CYP + HGRSK GE+VVYE  G+MQF RLA AGV+PFD+Q+H A FNDFVF KL   +    +DA+LMTVLD   L+L+ I+ N V  KYLAA +E+MQKHYP RQ R+LVVNAPWWF  +W  +S V+  G++ K ++ G N+LPTL+E VDASQIP EYGG +   LG S +E A  +  + ASL   + P P + + P  + A DG       A   V SGD    D L   +  GV    G ++ G  P                R+G  G+A      PR+SS VS+   A               SG  GD                 G+TQR ASAVR+ MRGGATRA+LGVENKFRYDTARR+WVM+G+ R   G                      +D        G++D SE +LIRAIQAAQQARGG   V S+            D  RTWR+DGP P        ++A  V+LAL + W AL++A E L  LW+L P  +GGLGFSA   G V++IA A +A+P   +PAAL+RV  RSPVR LR AT +Q+     LSGV  S+W  +   SR  A+FAA   A    R  + ++ARP+L +LL+VA G                     L  V  G+SQ+IG LA G VF+ AV A A+ GV+ FRL A AFVGVYLATL V ++ G  G  A WR     G+ G WLA CD VEEA A
Sbjct:    1 MSAPCPRSSSCERCSAFPGSRHFSEI------SSKGGDLSSNSSSTIAAGLRRADSGWHLGLVLGLLIGGLCYGRG------GGGGSSVVAKDGGEGTSWFDDKPAFVACAAACSVVLSVAVVAWRRT---GNDGAIKSETVVGCGRTTGALS--------VFGRRLRHGKGGS--------------AGRKEAFGEGEDGGEEEPLLAGGSLDAPGPSSSASEPG---ERTDVEAGAGGGA--DCPVSSRYLAACKGNTVAAKAMWDETVKWRTDTGAERSLSTPQPTLDIIKQCYPYFVHGRSKKGEVVVYEQTGKMQFGRLADAGVSPFDMQMHYAFFNDFVFSKL---NDEDDDDAKLMTVLDVGELRLATIKNNTVVTKYLAATAEVMQKHYPERQSRILVVNAPWWFAGIWKGVSGVLSSGTQAKLQIRGKNFLPTLLEHVDASQIPSEYGGDSPQALGESTDEMALCR--LAASLGPTSLPPPPEGAAPSRSDAGDGERSGDGSAVGSVASGDGDD-DHLVPDYSDGVGSESGVMEEGGIPGEFVGGXXXXXSSHGLRDGEEGSALQASPRPRESSAVSAAAAAGGASRDAKGASFGPGSGEDGDGXXXXXXADGGGSTGGLGVTQRFASAVRR-MRGGATRAYLGVENKFRYDTARRMWVMEGEGRGRSGATGNDGSGGVGERTRRKDTGGAQDETA-RDSDGDKDNSEQNLIRAIQAAQQARGGAKSVFSSGAXXXXXXXXXXDIVRTWRMDGPPPXXXXXXETTAA--VVLALHLVWVALEAATEALLPLWMLSPGGHGGLGFSAADTGVVLAIAVAALALPRYFSPAALLRVAARSPVRTLRAATSVQVIAATFLSGVATSAWTWTGPLSRD-ATFAAVTAAAAASRAASTMLARPALGNLLSVALGHAGXXXXXXXXXXXXXSADGVLLAVTAGVSQSIGVLAMGVVFSRAVAAGADAGVVSFRLVAAAFVGVYLATLLVSSSSGTAGSRARWRCGGGGGSGGPWLAMCDCVEEATA 976
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: A0A835YSU7_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSU7_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.890e-44
Identity = 165/593 (27.82%), Postives = 240/593 (40.47%), Query Frame = 3 
Query:  756 VPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKL-------------LFPSPRASEDARLMTVLDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWA-----------------MMSNVMLRGSRDKPRVLGANYLPTLMELVDASQIPPEYGGRNSDPLGFSPEEDAFRK--GLVTASLEEPTPSPVDHSPPLTTVARDGADGASAGAHVDVGSGDRPVADALARQHQRGVREGPVDGGSAPAREGTGAATIYVRAPRKSSFVSSTTDAASGSKGDPPPEGMTQRLASAVRQSMRGGATRAFLGVENKFRYDTARRLWVMDGDERSGGGXXXXXXXXXXXXXXXXXXEEAGEDYAGDAGESGERDGSENSLIRAIQAAQQARG-----------GKLPVPSTLN----------ARSYRDAARTWRVDGPSPGSMIGLGVSSAAVVLLALQMA-WSALDSALEVLSLLWVLVPVVYGGLGFSALGAGCVVSIATATVAIPGRLAP 2372
            VP RY++A     A A+  W A+ +WR E + D  L  P P   ++++CYP + HGR++DG +V YE  GRM F RLA AGVTP D+Q H    N++++ +L                      D +LMTVLD NGL +S ++ N V  +Y+ A +E+MQ HYP RQ R++++NAPWWF   W                    + V+   +  K ++ G +YL  L +L+   QIP +YGG +   LG + EE    +    + +                                +DV +   P   A+      G  EG   GG      G GA                                               G  +A LG  N+F YD AR++WV+  +E S                     EE  +  AG++    E    E +LIRAIQA+Q  R              LP  + L+          A +    +R       S  S++    S   VV+ A Q A W A+ +A E +  LW L P+  GGLG    GAG  +++  A +A   R  P
Sbjct:  233 VPGRYVRAFGEANAAAK--WSASCEWRRERRVDEVLTVPQPVFTIMKECYPHFLHGRARDGGVVCYENPGRMDFGRLAAAGVTPDDLQRHYCFVNEYIWQRLSPGDXXXXXXXXXXXXXXXXXXDDQLMTVLDVNGLGMSTLKNNTVMHRYMRASAEVMQAHYPDRQARIVIINAPWWFAGAWLDCIXXXXXXXXXXXXXHSFAGVLSANTTSKLQICGTDYLAALRKLIPDDQIPSDYGGSSPHKLGDADEERGLAELAAALNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLDVATTRCPTGGAMGVV---GGEEGEEGGGE----RGRGA-----------------------------------------------GGGQAHLGEGNRFTYDAARQMWVLKPEEPSA-------------DLTATAVEEEADPEAGESEPLSE----EEALIRAIQASQYQRQLERDRRAGVATALLPSAAALSPTAALPYLPPALTSATMSRGHSTRAASARSLVDGTGSFLLVVVTAFQYAAWCAVQAATEAMLPLWALAPLKAGGLGLRPAGAGLAIALXXAALAAAHRAGP 752
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: A0A835Z260_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z260_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.590e-37
Identity = 80/240 (33.33%), Postives = 127/240 (52.92%), Query Frame = 3 
Query:  747 DDPVPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTVLDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWAMMSNVMLRGSRDKPRVLGANYLPTLMELVDASQIPPEYGGRNSDPLGFSPEEDAFRKGLVTASLEE 1466
            D  +P RY+K   GD+A AR  W  T+KWR+  K D  L  P      I+  YP Y   R+K+G LV YE+ G     +L   GV    +  H     +F++ +L        E+++L++++D  G+ L+   G V   +Y+   ++++  HYP R  ++ V+NAPWWF +VW ++S +M   +R K  V GA Y+  L EL+D   IP + GGR+++  G   +E+   K  V   L +
Sbjct:   41 DLEIPIRYIKGMEGDMAEARRRWVETLKWRKSYKVDTMLDEPQLHFDAIKKYYPHYVSKRAKNGCLVYYEIPGETDLKKLRENGVDIDQLIRHYIYITEFIWRRL-----DTGEESKLLSIMDLRGVSLAQFAGEVR--EYMVRAAKLIGAHYPERSFKIFVLNAPWWFNMVWKVLSPLMHANTRAKVVVCGATYMDKLSELIDIESIPQDIGGRDAN-YGLKSDEEVALKEHVYKVLAD 272
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: A0A4D9CRJ4_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRJ4_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.840e-35
Identity = 185/636 (29.09%), Postives = 268/636 (42.14%), Query Frame = 3 
Query:  747 DDPVPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTVLDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWAMMSNVMLRGSRDKPRVLGANYLPTLMELVDASQIPPEYGGRNSDPLGFSPEEDAFRKGLVTASLEEPTPSPVDHSPPLTTVARDGADGASAGAH-----VDVGSGDRPVADA-LARQHQRGVREGPVDGGSAPAREGTGAATIYVRAPRKSSFVSSTTDAASGSKGDPPPEGMTQRLASAVRQSMRGGATRAFLGVENKFRYDTARRLWVMDGDERSGGGXXXXXXXXXXXXXXXXXXEEAGEDYAGDAG-ESGERDG-------------------SENSLIRAIQAAQQA-----RGGKLP---VPSTLNARSYRDAARTW-----------------------RVDGPSPGSMIGLGVSSAAVVLLALQMAWSALDSALEVLSLL-----WVLVPVVYGGLGFSALGAGCVVSIATATVAIPGRLAPAALVRVTTRSPVRALRVATIMQIATTILLSGV 2468
            D PVPA +L+A+ GD   A+  ++A++ WR     D  L  PHP    I++ YP Y HGR + GELVV+E  GRM    L + G+   ++  H   FN+F++ + L       +D R MTVLD  GL L+++  +V+ +  L   S +M  HYPGR  R+ VVN P+  G  W ++++V+ +  ++K  V  A     L++ +    +P E+GG +   LG S EE   R  +     EE                R+G  GA+ G       V      RP   A L+ +H  G  + P                      R S ++ S   AAS                S +  + R     A LGV NKF YD AR  WV+  +E+ G    XXXXXXXXX          G    G  G +SG                        E+ L+ AIQAA  A     R  K P   VP   N  S+   A                          R D  S G +     +SA  +LL LQ     L ++L   S L     W+  P   GGLG + L  G ++S+ T  +         + +RV    P+R  R+AT++ +A+T+L+ G+
Sbjct:  354 DRPVPATFLQAAGGDRVKAQAHYRASLAWRAREGVDGILRRPHPDFAAIKEHYPHYVHGRGRGGELVVFEQPGRMDLGALRKRGIGAAEIGRHYVYFNEFLY-RALRREGEGEDDGRAMTVLDIGGLGLTSLTPDVLEV--LRTTSHLMHAHYPGRVLRICVVNVPFLVGGAWRLLASVLPQAVQEKIEV-SAQPSVDLLKYIAPENLPSEFGGTSPMGLGDSAEEKKLRALVHEGGKEE---------------GREG--GAATGPFRFLLPVSCLPPPRPSLHANLSVRHGNGPHKAPS---------------------RLSPWLPSLVTAAS----------------SLIPGTRRSTPRTAHLGVANKFIYDRARGAWVLREEEKEGDEGEXXXXXXXXXGMGGAL---GGRQLKGRHGTKSGXXXXXXXXXXXXXXXEEPLLPKTEEDGLVLAIQAAHIAEHLARRKTKCPSSWVPHAPNPSSHPRHASPHIFAPKPPSVDPSERGPFPRPHPPRSDADSLGDVGEPAPASAPSLLLVLQTTVLYLGTSLLHFSFLPMVPVWLASPYQEGGLGLTPLSLGLLLSLGTTLLFFLHAYPSPSFLRVPDAHPLRTFRLATVVLVASTVLICGL 928
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: D7G157_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G157_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 8.170e-35
Identity = 75/240 (31.25%), Postives = 125/240 (52.08%), Query Frame = 3 
Query:  747 DDPVPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTVLDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWAMMSNVMLRGSRDKPRVLGANYLPTLMELVDASQIPPEYGGRNSDPLGFSPEEDAFRKGLVTASLEE 1466
            D  +P RY+K   GDV  AR  W AT+KWREE K D  L    P   +I+  YP +    +K+G +V YE+ G++  ++L   G+    +  H     +F++ +L       + + +L T +D  G +LS   G V   ++L   ++M+  HYP R  ++ ++NAPWWF +VW  ++  +   +R K  V G N+L  + EL+D   +P + GG++  P    P+E    + +V    E+
Sbjct:   62 DMEIPIRYVKGMEGDVVEARRRWIATLKWREEEKVDGILDEACPHFDIIKKYYPHFYFKHAKNGSVVYYEIPGKIDLNKLRENGLDMDSLCRHYVYITEFLWKEL-----DKNPEGKLFTCMDMKGTKLSMFAGEVK--EFLVRSAKMVGAHYPERSYKIFILNAPWWFSVVWKFVTPFVHPNTRAKVVVCGGNFLEKMGELIDLENVPQDVGGQDPTPPLQGPQELQMHEHVVKVLKEK 294
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: W7TCC3_9STRA (Sec14 cytosolic n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCC3_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.340e-30
Identity = 75/230 (32.61%), Postives = 125/230 (54.35%), Query Frame = 3 
Query:  750 DPVPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTVLDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWAMMSNVMLRGSRDKPRVLGANYLPTLME-LVDASQIPPEYGGRNSDPLGFSPEEDAFR 1436
            D +PA +L +  G+V  A   W+ + +WREE   D+ L  PHP    ++  YP + HGR   G  +  E+ G M    +  A ++P D+ +H A   ++V+  +L P     +D +++T++D  GL L+ +  +  ++  + A SE +  HYP R  R+LVVNAP +FG ++ ++S VM    RD+ ++  +   P  +E  +    +P EYGG+NS   G S EE + R
Sbjct:   86 DEIPANFLASCKGNVEKAGRKWQVSKQWREENDIDHILQRPHPHYETLKTVYPAFLHGRDLQGNCISVEIPGSMNVKLMKSAKLSPRDMALHLALVQEYVW-TVLTPG----DDRKIVTLMDAKGLSLTRL-ASPDSLALIRAASETLNNHYPDRVLRILVVNAPRFFGPIFRLLSTVMPASVRDQFQICSS---PADVEKFISPDVLPVEYGGKNSLKFGQSEEEVSLR 306
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: A0A835YPD3_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.430e-28
Identity = 74/236 (31.36%), Postives = 124/236 (52.54%), Query Frame = 3 
Query:  753 PVPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTVLDFNGLQLS--AIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWAMMSNVMLRGSRDKPRVLGANYLPT-LMELVDASQIPPEYGGRNSDPLGFSPEEDAFRKGLVT 1451
            P+P R+L A  GD   A   W  TV+WR+    DN L  PHP+  +I+  Y    H    +G +V YE+ G+M    L   GV   D++ H     +F++    F  PR  E  +L  V D  GL+++   +RG   +  +L +   M+  HYP R  +++++NAP    L +  + +++ + +RDK  V+  + + T L++++    +PP+YGG  + PLG SP E + R  ++T
Sbjct:   31 PMPRRFLIAEEGDAKKAAARWVTTVEWRQSQDMDNVLSQPHPQFDLIKHFYKFCFHLPDCNGHMVYYEMPGQMNMAALKDYGVEREDLRRHYCYCMEFLWR---FLQPR--EVDKLTIVFDCEGLKVNYQELRGETFS--FLKSTVSMLSAHYPNRSFKIVILNAPSALNLFYGALKSIIPQRTRDKISVIPPSQMATELLQIIPPENLPPQYGGTCTIPLGQSPAEVSLRAHVMT 259
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: A0A4D9CR90_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR90_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.480e-28
Identity = 73/227 (32.16%), Postives = 124/227 (54.63%), Query Frame = 3 
Query:  756 VPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTVLDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWAMMSNVMLRGSRDKPRVLGANYLPTLMELVDASQIPPEYGGRNSDPLGFSPEEDAFR 1436
            +PA +L +  G+V  A   W+A+ +WREE   D+ L  PHP    ++  YP + HGR   G  +  E+ G M    +  A ++P D+ +H A   ++V+  +L P     +D +++T++D  GL L+ +  +  ++  + A SE +  HYP R  R+LVVNAP +FG ++ ++S VM    RD+ ++  +     + + +    +P EYGG+NS   G S EE + R
Sbjct:   73 IPANFLASCKGNVEKAGRKWQASKQWREENDMDHILQRPHPHYETLKTVYPAFLHGRDLQGNCISVEIPGSMNVKLMKSAKLSPRDMALHLALVQEYVW-TVLTPG----DDKKIVTLMDAKGLSLTRL-ASPDSLALIRAASETLNNHYPDRVLRILVVNAPRFFGPIFRLLSTVMPASVRDQFQICSSP--GDVEKFISPDVLPVEYGGKNSLQFGQSEEEVSLR 291
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: B7FYZ1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYZ1_PHATC)

HSP 1 Score: 127 bits (319), Expect = 4.390e-27
Identity = 75/231 (32.47%), Postives = 115/231 (49.78%), Query Frame = 3 
Query:  750 DPVPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTVLDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWAMMSNVMLRGSRDKPRVL--GANYLPTLMELVDASQIPPEYGGRNSDPLGFSPEEDAFR 1436
            D +P R+L+A  GDVA     + AT++WR     D  L  P+    +I+  YP + HGR+K G+ V +E   R     L R GV+   +  + A   +F +  +        + AR + V+D  G++L    G V  I ++   S    +HYP R G V+V+N P WF L+W ++ + +   + DK  +L   A     + EL+    IP EYGG ++ PLG S EE   R
Sbjct:  211 DELPLRFLRAGKGDVAEGLRRYHATLQWRANLGMDTILREPNEDFDLIKSHYPAFYHGRAKSGQPVFFECPPRTNLKALRRGGVSLEKLLRYYAMLTEFGWQYV-----ERDDLARSVYVIDLQGMRLGDFVGEV--IDFVKKASAFTSQHYPERAGYVMVINVPSWFKLIWNVVKSFVDEVTLDKISILRGSAEIQARMRELISVENIPSEYGGISTTPLGESKEEHLLR 434
[Close]
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Match: A0A6G0WJQ6_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJQ6_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.690e-27
Identity = 71/229 (31.00%), Postives = 118/229 (51.53%), Query Frame = 3 
Query:  741 VDDDPVPARYLKASAGDVATARNMWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYELAGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTVLDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGLVWAMMSNVMLRGSRDKPRVL-GANYLPTLMELVDASQIPPEYGGRNSDPLGFSPEE 1424
            V++ P   R++ A  G++   R  ++AT+KWR E + D  L  P P   +I+  YP+Y HG+SK+G  V YE  G + F  L ++G++   +  H     +F++ K+L PS    +  R +TVLD        + G+V +  ++        +HYP R  +++V+N P WF   +  MS ++   ++ K R+   +     L+  +D  Q+P  YGG  S  LG S EE
Sbjct:   24 VEEIPFSPRFIAAEKGNLEKGRQRYEATLKWRRENRIDTLLYEPQPHFHIIKQNYPQYFHGKSKNGHRVYYERLGYVDFKTLKKSGLSMDQLLHHYMYITEFLW-KILEPS----DSGRSITVLDVANFGFFDLTGDVTS--FIRQAMAFAGEHYPERSAQIIVINVPGWFNATYRAMSPLIDPVTKAKIRICTSSTATQELLAAIDIDQLPSNYGG-TSCALGESEEE 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11731.1358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZM4_ECTSI1.920e-18943.25CRAL-TRIO domain-containing protein n=3 Tax=Ectoca... [more]
A0A835YSU7_9STRA1.890e-4427.82CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A835Z260_9STRA2.590e-3733.33CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9CRJ4_9STRA3.840e-3529.09CRAL-TRIO domain-containing protein n=1 Tax=Nannoc... [more]
D7G157_ECTSI8.170e-3531.25CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
W7TCC3_9STRA2.340e-3032.61Sec14 cytosolic n=1 Tax=Nannochloropsis gaditana T... [more]
A0A835YPD3_9STRA3.430e-2831.36CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9CR90_9STRA3.480e-2832.16CRAL-TRIO domain-containing protein n=1 Tax=Nannoc... [more]
B7FYZ1_PHATC4.390e-2732.47Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6G0WJQ6_9STRA4.690e-2731.00CRAL-TRIO domain-containing protein n=1 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11731contigH-elongata_contig11731:434..7492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score605.1
Seed ortholog evalue5.7e-170
Seed eggNOG ortholog2880.D7FZM4
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-17_003760.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons9
Model size3807
Cds size2958
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.9660733-UTR-H-elongata_contig11731:433..4921622929683.9660733-UTR-H-elongata_contig11731:433..492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11731 434..492 +
1691679118.2854764-UTR-H-elongata_contig11731:433..4921691679118.2854764-UTR-H-elongata_contig11731:433..492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11731 434..492 +
1622929684.1226418-UTR-H-elongata_contig11731:6702..74921622929684.1226418-UTR-H-elongata_contig11731:6702..7492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11731 6703..7492 +
1691679118.370046-UTR-H-elongata_contig11731:6702..74921691679118.370046-UTR-H-elongata_contig11731:6702..7492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11731 6703..7492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.983554-CDS-H-elongata_contig11731:492..11991622929683.983554-CDS-H-elongata_contig11731:492..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 493..1199 +
1691679118.29477-CDS-H-elongata_contig11731:492..11991691679118.29477-CDS-H-elongata_contig11731:492..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 493..1199 +
1622929684.0017242-CDS-H-elongata_contig11731:1458..15211622929684.0017242-CDS-H-elongata_contig11731:1458..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 1459..1521 +
1691679118.3022344-CDS-H-elongata_contig11731:1458..15211691679118.3022344-CDS-H-elongata_contig11731:1458..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 1459..1521 +
1622929684.0151336-CDS-H-elongata_contig11731:1933..21231622929684.0151336-CDS-H-elongata_contig11731:1933..2123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 1934..2123 +
1691679118.309863-CDS-H-elongata_contig11731:1933..21231691679118.309863-CDS-H-elongata_contig11731:1933..2123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 1934..2123 +
1622929684.0280495-CDS-H-elongata_contig11731:2588..27341622929684.0280495-CDS-H-elongata_contig11731:2588..2734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 2589..2734 +
1691679118.3174002-CDS-H-elongata_contig11731:2588..27341691679118.3174002-CDS-H-elongata_contig11731:2588..2734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 2589..2734 +
1622929684.046898-CDS-H-elongata_contig11731:3432..36341622929684.046898-CDS-H-elongata_contig11731:3432..3634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 3433..3634 +
1691679118.32512-CDS-H-elongata_contig11731:3432..36341691679118.32512-CDS-H-elongata_contig11731:3432..3634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 3433..3634 +
1622929684.059293-CDS-H-elongata_contig11731:4023..46351622929684.059293-CDS-H-elongata_contig11731:4023..4635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 4024..4635 +
1691679118.332951-CDS-H-elongata_contig11731:4023..46351691679118.332951-CDS-H-elongata_contig11731:4023..4635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 4024..4635 +
1622929684.0772676-CDS-H-elongata_contig11731:5099..53971622929684.0772676-CDS-H-elongata_contig11731:5099..5397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 5100..5397 +
1691679118.3434603-CDS-H-elongata_contig11731:5099..53971691679118.3434603-CDS-H-elongata_contig11731:5099..5397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 5100..5397 +
1622929684.0922291-CDS-H-elongata_contig11731:5675..58361622929684.0922291-CDS-H-elongata_contig11731:5675..5836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 5676..5836 +
1691679118.3522677-CDS-H-elongata_contig11731:5675..58361691679118.3522677-CDS-H-elongata_contig11731:5675..5836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 5676..5836 +
1622929684.1078136-CDS-H-elongata_contig11731:6123..67021622929684.1078136-CDS-H-elongata_contig11731:6123..6702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 6124..6702 +
1691679118.360964-CDS-H-elongata_contig11731:6123..67021691679118.360964-CDS-H-elongata_contig11731:6123..6702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11731 6124..6702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11731.1358.1prot_H-elongata_contig11731.1358.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11731 493..6702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11731.1358.1

>prot_H-elongata_contig11731.1358.1 ID=prot_H-elongata_contig11731.1358.1|Name=mRNA_H-elongata_contig11731.1358.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=986bp
MLFLTGPCPPSSSCERCDKLPRRRNVSEIRFTEAVDPVAGSGDDGSGSTM
AALRRADSWWHVGLVLGPLIGGLLYGRNLGWRWLGGGVDPEKADNPALVA
CAGACLCVLIVAAWRSTTFRESVGALLRYCVGICYRDIGVASRSRRSTGK
VGGRATRRGPRGVRRSRRISDADFLSLAGVREEVEDDDSEETPLIGNISA
HSLSSAAGSPGRMAEGADLEAGTGAGAVDDDPVPARYLKASAGDVATARN
MWKATVKWREETKGDNPLLAPHPRLGMIRDCYPRYAHGRSKDGELVVYEL
AGRMQFDRLARAGVTPFDVQVHCARFNDFVFGKLLFPSPRASEDARLMTV
LDFNGLQLSAIRGNVVAIKYLAAMSEMMQKHYPGRQGRVLVVNAPWWFGL
VWAMMSNVMLRGSRDKPRVLGANYLPTLMELVDASQIPPEYGGRNSDPLG
FSPEEDAFRKGLVTASLEEPTPSPVDHSPPLTTVARDGADGASAGAHVDV
GSGDRPVADALARQHQRGVREGPVDGGSAPAREGTGAATIYVRAPRKSSF
VSSTTDAASGSKGDPPPEGMTQRLASAVRQSMRGGATRAFLGVENKFRYD
TARRLWVMDGDERSGGGRGGGGGSRPGGARGGRAEEEAGEDYAGDAGESG
ERDGSENSLIRAIQAAQQARGGKLPVPSTLNARSYRDAARTWRVDGPSPG
SMIGLGVSSAAVVLLALQMAWSALDSALEVLSLLWVLVPVVYGGLGFSAL
GAGCVVSIATATVAIPGRLAPAALVRVTTRSPVRALRVATIMQIATTILL
SGVTGSSWLTSPHKSRGGASFAAAVFAYTVMRLPNVVARPSLTSLLAVAF
GTGPSGGGNIARRRTALKVVAVGISQAIGGLAAGAVFAAAVRARAETGVI
CFRLAAVAFVGVYLATLFVDATEGAGGYSAVWRGACGAWLATCDFVEEAM
APVNRGVRGTEGSGGMFVSATARGWGTMGSTAKES*
back to top

mRNA from alignment at H-elongata_contig11731:434..7492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11731.1358.1 ID=mRNA_H-elongata_contig11731.1358.1|Name=mRNA_H-elongata_contig11731.1358.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7059bp|location=Sequence derived from alignment at H-elongata_contig11731:434..7492+ (Himanthalia elongata Himel1 dioecious)
CGCAGCTGTTCTGGGCGCGATGCCTGGGCGGCTTCTTTTCCGGACTACTT
TGCAGCGGCATGCTATTTCTCACGGGACCTTGCCCCCCGTCCTCCTCCTG
CGAGAGGTGCGACAAGCTTCCACGTAGGAGAAACGTGTCGGAAATCCGTT
TCACTGAGGCCGTTGATCCCGTCGCCGGAAGTGGCGATGACGGCTCCGGA
AGCACCATGGCCGCGCTACGACGCGCAGACAGCTGGTGGCACGTGGGGCT
CGTGTTGGGGCCCCTCATCGGTGGGCTGCTCTATGGGCGCAACCTCGGGT
GGCGGTGGCTGGGCGGTGGGGTCGACCCCGAGAAAGCGGACAATCCCGCC
CTCGTCGCCTGCGCTGGCGCATGCCTGTGCGTTCTGATCGTCGCGGCGTG
GCGCAGCACCACATTCCGCGAGTCTGTCGGGGCTCTGCTCCGCTACTGCG
TGGGTATCTGTTACAGGGACATTGGAGTCGCCTCGAGAAGCCGACGTTCT
ACGGGAAAAGTAGGAGGGCGAGCGACTCGACGTGGTCCTCGGGGTGTACG
GAGGAGCCGAAGAATTTCGGACGCAGATTTTTTGAGCCTGGCAGGCGTGC
GGGAGGAAGTGGAAGACGACGACAGCGAGGAGACTCCTCTGATCGGGAAC
ATCTCAGCGCACAGCCTTTCCTCGGCTGCAGGATCTCCGGGTAGGATGGC
CGAGGGCGCGGATCTAGAGGCGGGGACAGGAGCTGGTGCCGTCGATGATG
ACCCCGTTCCGGCAAGGTGTTCCCCCTTGATCCTCCGATTTATTGGTTGG
TTCCCTTCCGTGTGGGCGTCCAAAGCGCTAGAGGTTGGACAAGAATCGCT
GCCCGGCCTACTCATCTCAGACTGAAATGGTAGTCACGACGATACGCTGC
CGGTGGTAGCGAAACGGAACTGTGGACTCGACAGAGAGAGCTACTGATTG
CTTAGTACCGGTCCTACCCCCCTCCCTCTTCCCTCCGTACTTCCCCGGCC
GCCTCTTCGACGTCATCGCGAGCAGGTATCTCAAGGCCTCGGCGGGCGAC
GTGGCCACCGCGAGAAACATGTGGAAAGCAACCGTCAAGTGCGAAATCCT
CCTCGGCGCAGAGTCGGCCACACTCGTTTTGTAATTCTCGTGGGAATCTG
CGAACGTGCAACCGTTTCGGATTTACGATACATTAGAGTCGAAATAGTGT
TACTCGTGGAACCGGGGTCCTGTCCGCCGCTTCCACACCCTTTCCGCGCC
TCTTCCGAAAGCGTTCACCGCTTGGTCGAACATTGACTCTTTTTTCCCGT
TGGTTAATGATACATTTCGCCGTAACATTGCGTGGGTGAGGGTGAGGATC
AAGGTTAAGTTGGCGTTATTCTTGGGTCAGATCTACGGAAATCTTTACGA
GTACACAAATGGTGCATGTTTTCGGAGAAGTGGTTAAAGTCGCGTCTCGC
TTTATGCCGTTCTGACTCGTTTGCTTCGCTGTTTATGGTCTTCGTGCCAG
GTGGCGCGAGGAGACAAAGGGGGATAATCCTCTACTCGCACCTCACCCAC
GCCTAGGTATGATAAGAGACTGCTACCCTCGTTACGCTCACGGACGATCG
AAGGACGGCGAGCTCGTGGTATACGAGCTCGCGGGGAGGATGCAGTTCGA
CCGCCTGGCGAGGGCGGGCGTGACGCCGTTTGACGTGCAGGTACAGTTTC
GTGCTACTGTATACGCGTCTTTATGTGTGTATATGCTTGGGCGACAGCGA
AAACGTGGTATGATTATCACCTTATTAACTTGAAAAATACGTGGGTGTAT
TGCAGTCAGACGGACGCGAATCGGAAGGACACGTTCTTGTCGCTCGAGCG
CAGGTCGCCGTTGGTTTCTCCCCCGAGTCACACCATGTTGGAGGCAAGAA
GTCAATTATCTCCACCTCCGCCTCTCCCCCCTGGCACGCGTCCGCGTCAG
GAAACTGACGTTGCACCTCTTTGTCAAAAACATGCACCACTCGTATAGCT
GTAAGGATTCCCGAAGGCCCAACGCCTGGATAATGCCAACTTAATCCAAA
CCCATGCGCCATATTATAGTGAAACTAATTATCAACCCGAGTCAATTCTC
GAAAAAAAGTGGTAAAAACTCTAGCGGGGTCCGCGGTGCGATCGGCCGGC
GTCAGGTACACTGCGCACGCTTTAACGACTTCGTGTTTGGTAAGCTGCTG
TTCCCGTCTCCTCGTGCTTCGGAGGACGCTCGGCTGATGACGGTGCTTGA
CTTCAACGGCCTGCAACTTTCCGCGATCAGGGGAAACGTGGTCGCCATTA
AGTACGAGTCTCTGTCGATTTACGTACCCCCTCGGTGCTCGTAGTGTTGC
TGAAAAGCCCTGTACTACTGCTAATGGGCCCCTGGATGCGGTGTGTTGCA
CCACTATTGTCTCTCGATGGCAATGTTTGAGGGTGCGCGTGTCGGTGGGA
GCATGTAGGGCTCGGAGAGAAGCCCCCCCCCCTCACACCATTTTCCCCAT
TTTTCTTCTTCTCTTGATTACTAAACTTAAATGTAGCAAAATATGCCGTG
TTCGTTCGAAATATCTCACCAGGTGTTGTCGGGATGAAACATAAAACGGC
ACGTATCGATTCTGCAGCATAAACAAAAATGGCGAGAGGAGAAGGGAGGC
GTACTCAAGCTTTGCTTGCCTTAGCGATTAATATATCATTGACCATGCAT
CCTTGTTTTTTTTCGTATTGGTGGGGGTTGTAGCCCTAGGTATGGCCTCG
CCCCCCGCCAACAGTGCCCCCCGAGACAACTTGTCAAAATGTTGGTGGAC
CGTCGCCTAAGTGTTCAGGAATCGAGCTAGATCCCCCCTTTGTCGAAAGA
AAATGCGACGAGTTGGCGAGGGTTTGATTCCTGCATCCAGGTTTTGTGTT
CCCTTCCCACTTTCCCACCAGAGACGGTATCGTAGGCCGACGATAACCCC
GTGATCCCTCTTCCTCCCCCCACCTCAAAACCGTTTGCGCGCGCAAAAGA
TACCTCGCCGCGATGTCAGAGATGATGCAGAAGCACTACCCGGGGCGCCA
GGGCCGGGTGCTTGTGGTGAACGCTCCGTGGTGGTTCGGCCTTGTTTGGG
CAATGATGTCGAATGTGATGTTGCGTGGCTCGCGGGATAAGCCAAGAGTC
CTGGGTGCGAACTACTTGCCGACGTTGATGGAGCTCGTGGACGCGTCGCA
GGTGAACACTGTGGCGCGCGCGGAGGGGCGTGGGAGCGGTCTTGTGGGGG
CGCGCAAGCAAACGTGTTAAGCGGAATGTGTGGCGTTACCTTGAGATGTC
ATTCATTATTGGTGACGATATACAACACGCGGTACCTTCGGAGCAGCGAA
CCCGTCGTTTGTTTGCTACTAGACCGCCTGCCGAAGCGTGTTTCCCTAGA
ACGACAACCGTTATGCAAGTAGTGTTTTACTACTCAATTGTCGCAGTTGA
CACTAAGCAGATCTTCCTACAGCCATACGGCACATTCTTTCTCTTCGCCT
GCCTAGCTTTGCCGAGGAATGTTTATCGAAACGTCTGTCATCCATTTTAC
GGTGTTTGTGTGGTGTCCCCTGTCCCCCTACTTTTTTCAGATCCCACCTG
AATACGGTGGTCGTAACTCAGACCCCTTGGGATTTTCTCCGGAGGAAGAT
GCCTTCAGAAAGGGATTGGTCACCGCCAGCCTTGAGGAACCAACGCCATC
ACCGGTGGACCACTCTCCGCCCTTGACGACAGTCGCAAGGGACGGGGCCG
ATGGTGCTTCCGCCGGTGCACATGTAGATGTCGGCAGCGGCGATCGTCCG
GTCGCAGACGCTCTCGCCAGGCAACATCAGAGGGGTGTCAGAGAGGGACC
AGTGGATGGAGGAAGCGCGCCCGCTCGTGAAGGGACGGGGGCGGCCACAA
TATATGTGCGCGCACCGCGCAAAAGCTCCTTCGTGTCGTCGACTACTGAT
GCTGCTAGCGGAAGCAAAGGTGACCCCCCCCCCGAAGGGATGACCCAGCG
GCTGGCGTCTGCGGTGCGGCAGAGTATGCGCGGGGGCGCCACGCGGGCCT
TCCTGGGGGTAGAAAACAAGTTCCGGTACGACACCGCGCGGCGACTGTGG
GTCATGGATGGGGATGAGAGGAGTGGAGGAGGTCGTGGCGGCGGCGGTGG
ATCGCGTCCCGGCGGAGCCCGCGGCGGACGAGCTGAAGAGGAGGCGGGTG
AGGTGAGAACGTAGGCGGTGCTGGGGCTGCTTGTTTGATCTGCGACAAGA
GTAGCAGCACTGATACGTGAAGTATGTCGGGAGCAGGAAATAAAGAAATG
TCGTGATTGTTTGGGCTGTCCTTTCGTAAGAGAAACGTGTCGCGGATGCG
ACGCCGGCGTGTGCGGAACGGCGGAAGAGAGACAAAAATACTTGGGGTTG
ATTTTTCCAGAGGAGGTGGGGCGACCTCTACTGGCGAGCGAAACCGCCGT
GGGCGATACCGGACCTTCGATTCGTGTTTATCGTTCGAGCTTGTGCTTGT
GCGTATGCAAACACTCGAAACGTCACCGGCTAAGCTGGCGTTCACAGTTC
GCGTCACCGCGCTCAACGACAGTCTTGGGAGCATGACCCTGACGCGCGAC
GAGTCATCCTTGCCTCCTCCCTCCCTCCCTCCCTCGCCACCCATCGGAAA
AACAAAAACGGTGCAGGATTATGCAGGAGACGCAGGGGAAAGCGGCGAGC
GAGACGGCTCCGAAAACAGCCTTATCCGCGCAATCCAAGCCGCCCAGCAG
GCGCGTGGCGGAAAATTGCCAGTCCCCTCCACTCTGAACGCGCGGTCCTA
CAGGGACGCTGCAAGGACTTGGAGGGTGGATGGGCCGTCACCGGGCAGTA
TGATCGGGCTTGGCGTCTCGTCCGCCGCAGTGGTGCTCTTGGCGCTGCAA
ATGGCGTGGTCGGCATTGGATTCGGCGCTGGAGGTGCTTTCCTTGCTGTG
GGTCCTCGTTCCTGGTGAGACCGGGCAAAAGAGAGTTTGTAATTCCTATT
ATTGGGAGGGTAGAAGGGGGGGTGTCATGCGCTTCTTTTTTTTAAAGCTG
TAGACGATGGTTGGGAAAACGCCACACGTTCGCAGATGCCCGCGCGAGAA
TTCCGCGACGCAAGATTGGGTTAAACTCTCGGACATTACTGTGTTTTTGT
TTTATTTTGTTTTTTCACGTCATTGCGGGATGTTTTATCGCGCTTTCTGT
ACCTCGCACGTTTCTCGTATGGTGTCTGTATTTGTGATGCAGTGGTCTAC
GGCGGTCTGGGGTTTTCGGCTCTCGGTGCGGGCTGCGTCGTGTCTATCGC
AACGGCCACTGTGGCGATCCCGGGGCGGTTGGCGCCCGCGGCCTTGGTCC
GTGTAACAACTCGATCTCCCGTTCGCGCTCTGCGCGTGGCAACGATCATG
CAGGTAAAGTTATCGCCGTCTTCGTGACTGCTGCGCCGCTTCCTTTTTTT
TCACCCTTCGGGCAAAGCCCTTTCCGCAAATTCATTTGCGTCAGTATCGC
GTGCAGGTGTAACGACCGGCGCACTCGACAACCATGACCTTAGTTAGCTC
TGTTGCGAGGTTCATGTCACGGAGCAAAAATATATATTCGGCGCAGCGCA
GTCAAAATACCACGCACGATCTCTCTCCTTGTGCACTCGAGCTCATCGAT
TTCTTCTTGCCAACAATGCTGCCGCGATGCGTTTGCGCAGATAGCCACCA
CGATCTTGCTGTCCGGTGTGACGGGATCATCTTGGCTTACTTCGCCCCAC
AAAAGCCGTGGCGGAGCCAGTTTTGCCGCCGCGGTATTCGCCTATACTGT
CATGCGTCTTCCTAATGTCGTCGCACGTCCGTCCCTCACCAGTCTCCTCG
CCGTGGCGTTTGGGACCGGCCCCTCCGGCGGCGGGAACATCGCACGGCGT
CGCACGGCGCTCAAAGTTGTGGCCGTTGGAATTTCTCAAGCGATTGGTGG
TTTGGCTGCGGGCGCGGTCTTTGCGGCAGCTGTAAGGGCCCGGGCCGAAA
CTGGCGTCATTTGCTTCCGCCTCGCCGCTGTTGCGTTCGTCGGCGTTTAT
CTAGCGACGCTTTTCGTCGATGCCACGGAGGGGGCGGGGGGATACAGCGC
GGTGTGGCGTGGTGCCTGCGGTGCGTGGCTCGCCACGTGTGACTTTGTTG
AGGAGGCGATGGCGCCTGTAAACAGAGGGGTCCGTGGCACGGAAGGGTCT
GGGGGCATGTTCGTATCGGCAACAGCGCGGGGCTGGGGAACCATGGGGAG
CACGGCAAAGGAATCGTAGAGTGGTGGAGTTAAGAATTCCTGCGTTGTGC
ACCACAGCCGCGCTCGTAAGCTCTGTTTTGGATTGGAAATGAGCGGTTCT
GTGTTTGAACTCGGCGCGAGAACGTTCTGCTCTTCAATCGGCGAGGATTA
GGTGGAGGTGACATTATGCCTGGTAACTTTGGCATTACGGCGGCGGATGA
TAATAAGCAAGTTATCCTTGTCCGCGATATGCCCTTAATTCAGAGAGGGC
GGTGACCATGTGACAAAGGGTTAAGCGTCAGGTTGTCCTTGAGGGAGGGG
GTTATGATCGGCTATGTGCCCCGCAGCTATCCTCTTGGCAAGGTAGATAC
TGTAATTTCATTGTAGATCATGTGCATGCCTCTGTTGTTTTTTCGCTTGT
TGTGCGTTGTGTGTTTATGCGTAATGCTGTTTCCGAGCCATGCTTGTCTT
AACTTCGACTCGTCTGTGCATTCTACAGAATAGAGGTTGCTAGTCGCGTA
GCCGAAAGGGTGTCCGCAACCATCCCGAAAGTATTCGAGGGATTGAAGTA
TCACGGTAAGAAGATTTTGGTCAAAATAGTACATCGCGCAATTCGCTTGC
GGCACCAGGTAACCACATACTCTTCTACAGTAGTGTCGGGTTCTTGGGCA
GAAATCGTAATAAGAGAGCCAAGGCACCTGAATCATGATTATGAAAACGA
TTTTGATTGGAATGAATTCACCCCAGACTCCCAAACCCGCCAGCCTCCTG
TAACAAGGTGGAAAAGTAGAAAACGTTACGCACTCGCCATACAAGAGGAA
AGAGAATGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11731:434..7492+

>mRNA_H-elongata_contig11731.1358.1 ID=mRNA_H-elongata_contig11731.1358.1|Name=mRNA_H-elongata_contig11731.1358.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5916bp|location=Sequence derived from alignment at H-elongata_contig11731:434..7492+ (Himanthalia elongata Himel1 dioecious)
ATGCTATTTCTCACGGGACCTTGCCCCCCGTCCTCCTCCTGCGAGAGGTG
CGACAAGCTTCCACGTAGGAGAAACGTGTCGGAAATCCGTTTCACTGAGG
CCGTTGATCCCGTCGCCGGAAGTGGCGATGACGGCTCCGGAAGCACCATG
GCCGCGCTACGACGCGCAGACAGCTGGTGGCACGTGGGGCTCGTGTTGGG
GCCCCTCATCGGTGGGCTGCTCTATGGGCGCAACCTCGGGTGGCGGTGGC
TGGGCGGTGGGGTCGACCCCGAGAAAGCGGACAATCCCGCCCTCGTCGCC
TGCGCTGGCGCATGCCTGTGCGTTCTGATCGTCGCGGCGTGGCGCAGCAC
CACATTCCGCGAGTCTGTCGGGGCTCTGCTCCGCTACTGCGTGGGTATCT
GTTACAGGGACATTGGAGTCGCCTCGAGAAGCCGACGTTCTACGGGAAAA
GTAGGAGGGCGAGCGACTCGACGTGGTCCTCGGGGTGTACGGAGGAGCCG
AAGAATTTCGGACGCAGATTTTTTGAGCCTGGCAGGCGTGCGGGAGGAAG
TGGAAGACGACGACAGCGAGGAGACTCCTCTGATCGGGAACATCTCAGCG
CACAGCCTTTCCTCGGCTGCAGGATCTCCGGGTAGGATGGCCGAGGGCGC
GGATCTAGAGGCGGGGACAGGAGCTGGTGCCGTCGATGATGACCCCGTTC
CGGCAAGATGCTATTTCTCACGGGACCTTGCCCCCCGTCCTCCTCCTGCG
AGAGGTGCGACAAGCTTCCACGTAGGAGAAACGTGTCGGAAATCCGTTTC
ACTGAGGCCGTTGATCCCGTCGCCGGAAGTGGCGATGACGGCTCCGGAAG
CACCATGGCCGCGCTACGACGCGCAGACAGCTGGTGGCACGTGGGGCTCG
TGTTGGGGCCCCTCATCGGTGGGCTGCTCTATGGGCGCAACCTCGGGTGG
CGGTGGCTGGGCGGTGGGGTCGACCCCGAGAAAGCGGACAATCCCGCCCT
CGTCGCCTGCGCTGGCGCATGCCTGTGCGTTCTGATCGTCGCGGCGTGGC
GCAGCACCACATTCCGCGAGTCTGTCGGGGCTCTGCTCCGCTACTGCGTG
GGTATCTGTTACAGGGACATTGGAGTCGCCTCGAGAAGCCGACGTTCTAC
GGGAAAAGTAGGAGGGCGAGCGACTCGACGTGGTCCTCGGGGTGTACGGA
GGAGCCGAAGAATTTCGGACGCAGATTTTTTGAGCCTGGCAGGCGTGCGG
GAGGAAGTGGAAGACGACGACAGCGAGGAGACTCCTCTGATCGGGAACAT
CTCAGCGCACAGCCTTTCCTCGGCTGCAGGATCTCCGGGTAGGATGGCCG
AGGGCGCGGATCTAGAGGCGGGGACAGGAGCTGGTGCCGTCGATGATGAC
CCCGTTCCGGCAAGGTATCTCAAGGCCTCGGCGGGCGACGTGGCCACCGC
GAGAAACATGTGGAAAGCAACCGTCAAGTATCTCAAGGCCTCGGCGGGCG
ACGTGGCCACCGCGAGAAACATGTGGAAAGCAACCGTCAAGTGGCGCGAG
GAGACAAAGGGGGATAATCCTCTACTCGCACCTCACCCACGCCTAGGTAT
GATAAGAGACTGCTACCCTCGTTACGCTCACGGACGATCGAAGGACGGCG
AGCTCGTGGTATACGAGCTCGCGGGGAGGATGCAGTTCGACCGCCTGGCG
AGGGCGGGCGTGACGCCGTTTGACGTGCAGGTGGCGCGAGGAGACAAAGG
GGGATAATCCTCTACTCGCACCTCACCCACGCCTAGGTATGATAAGAGAC
TGCTACCCTCGTTACGCTCACGGACGATCGAAGGACGGCGAGCTCGTGGT
ATACGAGCTCGCGGGGAGGATGCAGTTCGACCGCCTGGCGAGGGCGGGCG
TGACGCCGTTTGACGTGCAGGTACACTGCGCACGCTTTAACGACTTCGTG
TTTGGTAAGCTGCTGTTCCCGTCTCCTCGTGCTTCGGAGGACGCTCGGCT
GATGACGGTGCTTGACTTCAACGGCCTGCAACTTTCCGCGATCAGGGGAA
ACGTGGTCGCCATTAAGTACACTGCGCACGCTTTAACGACTTCGTGTTTG
GTAAGCTGCTGTTCCCGTCTCCTCGTGCTTCGGAGGACGCTCGGCTGATG
ACGGTGCTTGACTTCAACGGCCTGCAACTTTCCGCGATCAGGGGAAACGT
GGTCGCCATTAAATACCTCGCCGCGATGTCAGAGATGATGCAGAAGCACT
ACCCGGGGCGCCAGGGCCGGGTGCTTGTGGTGAACGCTCCGTGGTGGTTC
GGCCTTGTTTGGGCAATGATGTCGAATGTGATGTTGCGTGGCTCGCGGGA
TAAGCCAAGAGTCCTGGGTGCGAACTACTTGCCGACGTTGATGGAGCTCG
TGGACGCGTCGCAGATACCTCGCCGCGATGTCAGAGATGATGCAGAAGCA
CTACCCGGGGCGCCAGGGCCGGGTGCTTGTGGTGAACGCTCCGTGGTGGT
TCGGCCTTGTTTGGGCAATGATGTCGAATGTGATGTTGCGTGGCTCGCGG
GATAAGCCAAGAGTCCTGGGTGCGAACTACTTGCCGACGTTGATGGAGCT
CGTGGACGCGTCGCAGATCCCACCTGAATACGGTGGTCGTAACTCAGACC
CCTTGGGATTTTCTCCGGAGGAAGATGCCTTCAGAAAGGGATTGGTCACC
GCCAGCCTTGAGGAACCAACGCCATCACCGGTGGACCACTCTCCGCCCTT
GACGACAGTCGCAAGGGACGGGGCCGATGGTGCTTCCGCCGGTGCACATG
TAGATGTCGGCAGCGGCGATCGTCCGGTCGCAGACGCTCTCGCCAGGCAA
CATCAGAGGGGTGTCAGAGAGGGACCAGTGGATGGAGGAAGCGCGCCCGC
TCGTGAAGGGACGGGGGCGGCCACAATATATGTGCGCGCACCGCGCAAAA
GCTCCTTCGTGTCGTCGACTACTGATGCTGCTAGCGGAAGCAAAGGTGAC
CCCCCCCCCGAAGGGATGACCCAGCGGCTGGCGTCTGCGGTGCGGCAGAG
TATGCGCGGGGGCGCCACGCGGGCCTTCCTGGGGGTAGAAAACAAGTTCC
GGTACGACACCGCGCGGCGACTGTGGGTCATGGATGGGGATGAGAGGAGT
GGAGGAGGTCGTGGCGGCGGCGGTGGATCGCGTCCCGGCGGAGCCCGCGG
CGGACGAGCTGAAGAGGAGGCGGGTGAGATCCCACCTGAATACGGTGGTC
GTAACTCAGACCCCTTGGGATTTTCTCCGGAGGAAGATGCCTTCAGAAAG
GGATTGGTCACCGCCAGCCTTGAGGAACCAACGCCATCACCGGTGGACCA
CTCTCCGCCCTTGACGACAGTCGCAAGGGACGGGGCCGATGGTGCTTCCG
CCGGTGCACATGTAGATGTCGGCAGCGGCGATCGTCCGGTCGCAGACGCT
CTCGCCAGGCAACATCAGAGGGGTGTCAGAGAGGGACCAGTGGATGGAGG
AAGCGCGCCCGCTCGTGAAGGGACGGGGGCGGCCACAATATATGTGCGCG
CACCGCGCAAAAGCTCCTTCGTGTCGTCGACTACTGATGCTGCTAGCGGA
AGCAAAGGTGACCCCCCCCCCGAAGGGATGACCCAGCGGCTGGCGTCTGC
GGTGCGGCAGAGTATGCGCGGGGGCGCCACGCGGGCCTTCCTGGGGGTAG
AAAACAAGTTCCGGTACGACACCGCGCGGCGACTGTGGGTCATGGATGGG
GATGAGAGGAGTGGAGGAGGTCGTGGCGGCGGCGGTGGATCGCGTCCCGG
CGGAGCCCGCGGCGGACGAGCTGAAGAGGAGGCGGGTGAGGATTATGCAG
GAGACGCAGGGGAAAGCGGCGAGCGAGACGGCTCCGAAAACAGCCTTATC
CGCGCAATCCAAGCCGCCCAGCAGGCGCGTGGCGGAAAATTGCCAGTCCC
CTCCACTCTGAACGCGCGGTCCTACAGGGACGCTGCAAGGACTTGGAGGG
TGGATGGGCCGTCACCGGGCAGTATGATCGGGCTTGGCGTCTCGTCCGCC
GCAGTGGTGCTCTTGGCGCTGCAAATGGCGTGGTCGGCATTGGATTCGGC
GCTGGAGGTGCTTTCCTTGCTGTGGGTCCTCGTTCCTGGATTATGCAGGA
GACGCAGGGGAAAGCGGCGAGCGAGACGGCTCCGAAAACAGCCTTATCCG
CGCAATCCAAGCCGCCCAGCAGGCGCGTGGCGGAAAATTGCCAGTCCCCT
CCACTCTGAACGCGCGGTCCTACAGGGACGCTGCAAGGACTTGGAGGGTG
GATGGGCCGTCACCGGGCAGTATGATCGGGCTTGGCGTCTCGTCCGCCGC
AGTGGTGCTCTTGGCGCTGCAAATGGCGTGGTCGGCATTGGATTCGGCGC
TGGAGGTGCTTTCCTTGCTGTGGGTCCTCGTTCCTGTGGTCTACGGCGGT
CTGGGGTTTTCGGCTCTCGGTGCGGGCTGCGTCGTGTCTATCGCAACGGC
CACTGTGGCGATCCCGGGGCGGTTGGCGCCCGCGGCCTTGGTCCGTGTAA
CAACTCGATCTCCCGTTCGCGCTCTGCGCGTGGCAACGATCATGCAGTGG
TCTACGGCGGTCTGGGGTTTTCGGCTCTCGGTGCGGGCTGCGTCGTGTCT
ATCGCAACGGCCACTGTGGCGATCCCGGGGCGGTTGGCGCCCGCGGCCTT
GGTCCGTGTAACAACTCGATCTCCCGTTCGCGCTCTGCGCGTGGCAACGA
TCATGCAGATAGCCACCACGATCTTGCTGTCCGGTGTGACGGGATCATCT
TGGCTTACTTCGCCCCACAAAAGCCGTGGCGGAGCCAGTTTTGCCGCCGC
GGTATTCGCCTATACTGTCATGCGTCTTCCTAATGTCGTCGCACGTCCGT
CCCTCACCAGTCTCCTCGCCGTGGCGTTTGGGACCGGCCCCTCCGGCGGC
GGGAACATCGCACGGCGTCGCACGGCGCTCAAAGTTGTGGCCGTTGGAAT
TTCTCAAGCGATTGGTGGTTTGGCTGCGGGCGCGGTCTTTGCGGCAGCTG
TAAGGGCCCGGGCCGAAACTGGCGTCATTTGCTTCCGCCTCGCCGCTGTT
GCGTTCGTCGGCGTTTATCTAGCGACGCTTTTCGTCGATGCCACGGAGGG
GGCGGGGGGATACAGCGCGGTGTGGCGTGGTGCCTGCGGTGCGTGGCTCG
CCACGTGTGACTTTGTTGAGGAGGCGATGGCGCCTGTAAACAGAGGGGTC
CGTGGCACGGAAGGGTCTGGGGGCATGTTCGTATCGGCAACAGCGCGGGG
CTGGGGAACCATGGGGAGCACGGCAAAGGAATCGTAGATAGCCACCACGA
TCTTGCTGTCCGGTGTGACGGGATCATCTTGGCTTACTTCGCCCCACAAA
AGCCGTGGCGGAGCCAGTTTTGCCGCCGCGGTATTCGCCTATACTGTCAT
GCGTCTTCCTAATGTCGTCGCACGTCCGTCCCTCACCAGTCTCCTCGCCG
TGGCGTTTGGGACCGGCCCCTCCGGCGGCGGGAACATCGCACGGCGTCGC
ACGGCGCTCAAAGTTGTGGCCGTTGGAATTTCTCAAGCGATTGGTGGTTT
GGCTGCGGGCGCGGTCTTTGCGGCAGCTGTAAGGGCCCGGGCCGAAACTG
GCGTCATTTGCTTCCGCCTCGCCGCTGTTGCGTTCGTCGGCGTTTATCTA
GCGACGCTTTTCGTCGATGCCACGGAGGGGGCGGGGGGATACAGCGCGGT
GTGGCGTGGTGCCTGCGGTGCGTGGCTCGCCACGTGTGACTTTGTTGAGG
AGGCGATGGCGCCTGTAAACAGAGGGGTCCGTGGCACGGAAGGGTCTGGG
GGCATGTTCGTATCGGCAACAGCGCGGGGCTGGGGAACCATGGGGAGCAC
GGCAAAGGAATCGTAG
back to top